Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0195500 |
| Transcript ID | LotjaGi4g1v0195500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT4G17600.1 Chlorophyll A-B binding family protein; Swiss-Prot: sp|Q9SYX1|LIL31_ARATH Light-harvesting complex-like protein 3 isotype 1, chloroplastic; TrEMBL-Plants: tr|I3SGH2|I3SGH2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0195500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:44939039..44942395) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGTTTTCAGAATGAATGAATTAAAGCTAAATTCATTGAGTGAGTAGTTATTGAGTCTAAGTTGGAAGATGGTGTAAT CCATGGATATTGCAGAGTAATAAATGATTGGATGTAGAAGTGTTCCAACCCAAACAAAATGACAAACAAGTTGAGCAGCT AAGGTAGGAGATTATAGCTCTTTTACCTTTTTGTATCTATGCTTTTTATATTCACTTGTTCAATTCATTACCTCTATTGT GCTCTTGCCATTATTTCCAAGGCTAAGGAGTGGGTGAGGATAACCCCAGAAACAGAAACCCACCCTCACCCTCACCCTCA CCCTCACTTCACTTCCCACACACCATGTTCTAAACTCTGATACCTCACAACACACACACAATGCAAACCATGTCAACCAC CATGGCTTCGTTTTCCCCTCTGACTCGTTTCTCAGCCACTCTTTCTTCCTCAAACTCCAAACCCCATCTCACCCAAAACC ATTTTTTCTTCACTCTCAGGCCAAAAAACCTTCCTCTTTCTCCCTTGAAGTGGAAGGCTTCTTCTGACAATGGAGCAGGA GCTTCTGATTCAGCTGCAACTGCAGTGGAATCGCCGCCGGAGAAAATCTCTGTTGGGACAAATGGGTCTGCTTCATCTGC TGCTGCTGCTGCAGCTGAGGAGTTGAAGATTCCCGGTGGTTTTGAGGACCCAAGATGGGTTGCAGGCACATGGGACTTGA TGCAGTTCCGGAAAAATGGCAGCACCGATTGGGATGCTGTTATCGATGCTGGTAACATTATATATAGCTTTGTTTGTTCA GTGTTTTGTCTTTGTTGAAAATCTTCATGGTCCCTTTGTATTGTAGGCTAGAATTTCACTATTCTGTGTTCATGTTCTTT GCTTCCCCTTTTCTATTTACAATGTATTCAATTGTTAGTTCAGTTAGACCCAAATCGATTTCCTACTATACAGTTTTTAT CTTTACCCCTGATAGTTATGCAAGCATGATTATGATTACAAGTGATGTGATGATGGAAAATGTTTAAACAGGATCACCAA ATGAAAGTAAGAAATTGAATTTCAGTAGCTAGGGTTGCAAATGGATGTTGAGAGAAGTTTTTTCTTATAAACTGAAGAAA TGATAGCTCTGGTTGGTACTTTGTGGTTGTGGAGGAAACATATACTACCAGTTTTCATTCAAATTCTGTATTTGTTTCTC ATCTGTTGTCATTTCTTCTTCCTTCTGCTAGGACTCGTTTTATTTATTTATTCGTCTATTTTTATTGGGTTAAAAAGGAG GTGCAGGACCTGGTTGTGGAGGGGAAGGGTGTGGTGGAGTGGAAGCAAAGGCTTACCAGCTGTTTCAATCTATATCAGTT TTTTCCTTTTTCCCTTTTTATTTGAGTGATGATTTTTCCGGCAGTTTTTTCACACTCGATTTACACCTCTTTATGTTTCT CTCATCCTTTCTCTTCACATTTCCATCACACCCCTCTCTTCGTTAGCTATGAGACTCACATTTACATAGGTGTTTGAGAA ACACTAATTTCCCTGTTTAAATATCATTACTACTACTATGTTTGAATCAACTTACTTTTCTTTAAAATCAATTCTGGCAC TCAGAAACTAGTCCTACTCGCATAAGCTTCTCAATTGGTTTTGGCTTTAGAGTCAATTGTAAAATTAATTTCCAAACATA TGCACTGAAAAGACTGCAAGCATTTTTTATGTAACTCTGCTTTACAGAAAATCTTTTGTTCTGTCAAGAGATCTATGCTT CTAGCCAAGAGCCCACGATCAAGCTCCACCTATGGCATACTATGTGTCTTCCTCTATTCTTGATTTGTTTCTCTTCTTTG TCAAATTGTTTCTGTTAATACTGCTGCAGTTTACCTGGGTGCTTTTACTTAGAAAAGGTGGCCATGGAGTTTGAGTTTAT TTCAAAGCATGAGAATGGGGCAGCCTAAGATTTTTATCCCCTCTAATGAAGTAATTTTAAGCAACTGCCTTTTGTAACCT TTTGTAATTATAGGTTTAGATAAAGGTTGTTACTTCTTTCTGGTTTGGATGCTCTTTCTTTTTGGAATTTAAGCTAAGTA TAGGGTTTGTGTTTGCTTTCCTTTTCTTTCTCTACAATTAGTGTTGACACGAAAAAGAAAATATTACTTTTGGGAATTTT GATGTGTCGTCTAAGTATATGACCTGTTATCATACATCAGGGTGCCTGTTTGTTTTCTTACAATGCCTATCCTTGAATAA TAATTAATACATCAATAAGCCCTTCCTCCTACCAAAGTGACACCTGATTATTAACAGCCATTTCCTATACTGTTTGACTG TGCTATAGTTCATTTTCTGTTTTGATTTTCATTTGTTTGAGAGAGGGGAATAGATGAATAGTCCATGTAAAGATTAGATT CATATGTTGTCGGCTTCTTATATTTCAGTTTTTTAATACTTAAACTTTACTTCATCTAAGGACATACTTTTGTGATTATT TTCAGAGGCAAGGAGGAGAAAGTGGCTCCAGGATAACCCAGAATCAAGCAGCAATGAAAATCCTGTGGTTTTTGACACCT CCATCGTACCTTGGTGGGCATGGATAAAAAGGTTCCATCTCCCTGAAGCTGAACGTCTTAATGGTAAGTTCTGCATTGTA TTCTAAATTGAAATTGGAGAATAAAGGGTTTCATGGCTTACCATTTTCTTCTTTTGAGTATCATGCAGGTCGCGCTGCAA TGATAGGATTCTTTATGGCATATCTGGTTGATAGCTTGACAGGAGTAGGTCTAGTTGATCAAACGAACAACTTCGTTTGC AAAACTCTTCTATTCATAGCCGTGGCAGGAGTACTTCTGATCCGAAAGAATGAGGACCTTGAAAATCTTAAGAAGCTGTT CGATGAGACTACATTTTATGACAAGCAATGGCAAGCAACTTGGCAGGATGAGAACTCAAACACTTCCAAAAAAGAGTAGT TGAATACTGGAATTGCTGTTAAGTAGTTCACTAGTTCTCCCCCACCCCCTTCTTTCTCTTAATATAGTGCTCTAGACATG AATATGAATTAGACCTTGTATTTCAATTCCTTTTCTTATTCAGAGTGCTTAATGACCCAAATAGTTTTTTTTGTGCTTGG CAAGATGCAATGCTGGATTTTTCTCTAGTGTCTGTGAAACTGTATTGTATGTTTGGGTAAGCTCTTAATTGGGGTTTTTT TATTTTGGGTTTAACCATTTGTATCTACTATTGAGGCAATCTTATTCAACCCGGGTGTGGTAAAAGTCAAACTCCCCAAG TGCGCGTATCTTAATTGAAGTTGTTATACTATGTTTGGTTGTGGGAGGAGAGAATGAGAAGAGACAATAAATTGATA
CDS sequence (LotjaGi4g1v0195500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAACCATGTCAACCACCATGGCTTCGTTTTCCCCTCTGACTCGTTTCTCAGCCACTCTTTCTTCCTCAAACTCCAA ACCCCATCTCACCCAAAACCATTTTTTCTTCACTCTCAGGCCAAAAAACCTTCCTCTTTCTCCCTTGAAGTGGAAGGCTT CTTCTGACAATGGAGCAGGAGCTTCTGATTCAGCTGCAACTGCAGTGGAATCGCCGCCGGAGAAAATCTCTGTTGGGACA AATGGGTCTGCTTCATCTGCTGCTGCTGCTGCAGCTGAGGAGTTGAAGATTCCCGGTGGTTTTGAGGACCCAAGATGGGT TGCAGGCACATGGGACTTGATGCAGTTCCGGAAAAATGGCAGCACCGATTGGGATGCTGTTATCGATGCTGAGGCAAGGA GGAGAAAGTGGCTCCAGGATAACCCAGAATCAAGCAGCAATGAAAATCCTGTGGTTTTTGACACCTCCATCGTACCTTGG TGGGCATGGATAAAAAGGTTCCATCTCCCTGAAGCTGAACGTCTTAATGGTCGCGCTGCAATGATAGGATTCTTTATGGC ATATCTGGTTGATAGCTTGACAGGAGTAGGTCTAGTTGATCAAACGAACAACTTCGTTTGCAAAACTCTTCTATTCATAG CCGTGGCAGGAGTACTTCTGATCCGAAAGAATGAGGACCTTGAAAATCTTAAGAAGCTGTTCGATGAGACTACATTTTAT GACAAGCAATGGCAAGCAACTTGGCAGGATGAGAACTCAAACACTTCCAAAAAAGAGTAG
Protein sequence (LotjaGi4g1v0195500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQTMSTTMASFSPLTRFSATLSSSNSKPHLTQNHFFFTLRPKNLPLSPLKWKASSDNGAGASDSAATAVESPPEKISVGT NGSASSAAAAAAEELKIPGGFEDPRWVAGTWDLMQFRKNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPW WAWIKRFHLPEAERLNGRAAMIGFFMAYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLLIRKNEDLENLKKLFDETTFY DKQWQATWQDENSNTSKKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 178 | 178 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| MobiDBLite | 50 | 82 | 33 | - | – | |
| PANTHER | 78 | 258 | 181 | 7.6E-98 | – | |
| PANTHER | 78 | 258 | 181 | 7.6E-98 | – | |
| SUPERFAMILY | 92 | 206 | 115 | 5.75E-11 | – | |
| Phobius | 179 | 199 | 21 | - | – | |
| Phobius | 200 | 204 | 5 | - | – | |
| Phobius | 205 | 222 | 18 | - | – | |
| Phobius | 223 | 259 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0195500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…