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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0198900 |
| Transcript ID | LotjaGi4g1v0198900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fatty acid oxidation complex subunit alpha; TAIR: AT4G16800.1 ATP-dependent caseinolytic (Clp) protease/crotonase family protein; Swiss-Prot: sp|F4JML5|ECH2M_ARATH Probable enoyl-CoA hydratase 2, mitochondrial; TrEMBL-Plants: tr|I1K0U5|I1K0U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0198900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:45828557..45833616) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGTGTTTCTATCATTTTTTTTTGAAAATGGGGAGTAAATTTGCAATTTACTTTTGTTTTGACATTTTCAGAACAAAT TTGGTTTACAAATTACAATACACACACAGTCGATTAAGCAAGAAGCTGGTGGTGGGAGAAGACACACACTTTGTTCTTAT TGAACTCGCATCCGAAATCTCAGAATGTGTGCTTTGAGAGCGTTGACAAGATCTGTGTGCAGCAGGAGCACCTCCTCCTA CTATAAAACCCTCAATTTCAACACACTCTACCACCACCAAACCCGCCGGAATCTAATTCTCGACTCTTCCGCTTCTGAAT TCGTCAAGCTTCACAAACTCACTGGCTCAGATTCCGGTTATTCCTCTTTTTTTTTCTATTCGTTTGTTTCAAAAACTTCA TAGCTATCTATAATTGGTGGAAAACTTGATTTTGTTTATAGGGATTATCGAGGTTAGCTTGGACAGGCCTGAAGCTAAAA ATGCTATAGGGAAAGAGATGTTGCGAGGCCTAAGTCATGTGTTTGAATTGATTAATCAGAACTCCAGTGCTAATGTTGCC ATGATCTGCAGTTCAGTTCCTGGGGTATTTTCTGCTGGGGCTGATTTAAAGGTTATTCATCAGTTTCTGTTTTGCTTATT TCTTGATAGGAAGGAGATAACTTGGGTGCTTCAGTGTATTTTGTTCTTCTATAGTGATTGGGATCACAGTAAAATGAACT GAAAATTTTGAAGCGTAACTTTTAGACATGATTTAATGGCATCCTTGATGGATTCTTGTTGCTATGCAAGCTAGTTTAGA GCAGAGTTGAAGGTTTTGTGTTTGTTGATTGCAGGAGCGAAGGACCATGAATCAATTTGAGGTTAAGGCTTTTGTGAAAT CTCTTCGCTCCGCATTTTCATTTCTAGAGGTCAGCTCACAGCATCATTCAATTATTTACATTCTAATAGTTGTGTACTTG TCGACATCATATTATGAATGAATAGTGGATGAAGTACAGTATTGTTAATCGCGGTTATAGGGCCGCTATGCTGCTATAGC GTAGCGGAATTCGCTGTGCCGCGAAGTAGCGGCAAACATGATAAACACCAAACGCCCGCGAAACTGATTAGCGCTGCGAC AGGCAGCAATTGTTGCACACAAACTGCCTGAATAAAGAGCTACTTCATCCAGTATTCATCATGCCAATAAGGTGTTTAGT TCTATTTCACCTCTTTTTTTTAGGGCGAGGGCATCATCAGCTCACGAGCTGACATTATTATTTTTTTCTGCCTCCACTTA TATAGTTTTACCTTGTTCTCCCTCCACTTTTGGAAAATTTCTATTAACGGATTCTACCATGTTCTTTTACTATGGTTTGT TACTTTTTTCCCCCAATTTTCTCAATGCTGCTCCTTCAAACCAGCATAATATTTGTTTCTTTATTCAGGCAGTTTGTGTA CCAACTATTGCTGTTATTGATGGAGTAGCTCTTGGTGGTGGACTTGAAATGGCTCTGGCATGTGATATTCGAATATGTGG TAGTTAAATACGCAGACTTCTGTAAATTGGACCTATTTGTTTGAAGGATTTTCTGAATACTTCTAAGTGTGATGCAGGAA TTAAGACCTTTTTATTCACTTGTTTCTACTCTCATGGTACAGGAGAAAATGCTCTGATGGGTTTGCCAGAGACAGGACTT GCTATAATCCCTGGGTATGCTGTACACTAATAATTCTCTTAAGCATACTGTATCTTTGACACCTCTTATTTCAGCCATCA TATCTTTTCAGTTATGCTATCTAGTAATGAATAGAGATCAAAATTTAATTTTCAAGATAGATTGTGGAGAATATATTTTA ATATATAGACAAGTATAAATCTAGTTGGGGGATTCAAATTGGCTTTAAATATTTTTATGAATGGTTGATATAAGGTTGGC ACAATATGCTTGGGACCTTAGTTTTTACTATTCTTTATTCTTGACTATCTGGCAAGAAATGTGCTTATGGTTTGTTTTTG TAAATGAGCGTTGCATGGTTTTTGCTCTCCCACAGGTAGTATCAACTTTATAGGTTCTTGCTCTGGAGTTTACGCCCCCA AAGCTAACAATGAGCATAAATAACCAACTATTTTTAATTTCTGTCAAATATTTTGAAATTTGTCTTAGTATTGTGGATAG TTTGAATCTTTTGGGAATAGATCATACCTCATGGAATCCTGTTGTGCACAGGGCAGGTGGAACACAGCGACTACCTAGAT TGGTTGGAAAAGCAATAGCAAAGGATATTATATTTACTGGTCGAAAGATTAATGGCAAAGAGGCTCTGTCCATGGGTATG TTGATTAGCCGCTCAGCAATTTTTTTTTTCTAATTAGTACAGATGTCTTCAAGCAGAGTTATAAGAGCATCTTGAGAGTA TGTGATATATAATTACTGTTTCAGTGACAGTTTAACTTAGAAATATTCAAGATATTCTAAAATGAAAGTTTTAGTTTGTC TCTAGTAAACTTCCTTTGCACTTGAGTTCCCTTGCCTACAGTTTGGCTGTCTTACTCTTAGCCATCTCCGGTTGAACTTC AGGAAAACAAAGAGAAAAGCCTCCACTATTGTGAAACTTCCAATGCATAACAAACCCTAAATTTTTGTCACTAGAAAGAA ATACTAACTTCTTTCTGCTCCATTTCACAAATAAAGCATGCCCCCCCCCACACCCCTCTTTTTCCCAACTAATATCAATG ATATGTAGCTGTATAAGCATACATTGATGCAGGTCTAGTAAATTACTGTGTTCCTGCTGGTGAAGCTTATTCCAAGGCAC TTGCAGTTGCTCGGGATATCAACCAGAAGGTATCTCTCCTCAAACTGATAGTGTTTTTAGGGGTCAGGCTTTTTGTGCCA TTCAATGCACATATATAGAAAATGGCAGTGACTGATTTTTCTTTTATATTGATTTTCCATTTTCTTTTTTCAAAGAAGTT GTTTAATTTATAAAAAGAAAAAGAAAAAGAAAAATACTGCCCATATTTTAACTTGTAAATGCATTACCAAAAACTTGACT TCGTGTGCAAACACTTATGCCGCCCATAAATGATTTGGTTGGTGCAATTGATCCAAATGACCGAATGTGCAAATCAAGAG CATGTCTGGGTAATTTATCCAAAATAACTTCTGATTAGAGTGTATTTCGAAGAATTACTTGTTGACCTTTTTCTGTGAGA AATTTCAGGCTGAAATTAATTTGTCAAATTGAGTTGCTTGGATAGTATGAAATTTAGATCATAAAATTTTCAAGAAAGTA TTCCTTCTATTTAATTGAAAACTTGACTTTTGAGATAAGGATTGGTTGTTGTTATTCTTCTTGTATGATATTCAGTTACA TTAACAGGGTCCTATAGCTTTAAGGATGGCTAAAAGAGCTATTAACGAGGGAGTTGAGACTGATTTAACATCAGCTTTGG TTTTGGAAGAAGATTGCTATGATCAAGTGTTGAATACTAAAGATCGACTTGAAGGCTTGGCTGCATTTGCTGATAAGCGG AAACCAAGGTATACGGGTGAGTGAAAGGAGTGGTGGTATTCTGATTATTACCTCTCTTTGTTGCTAGAGAGGTTTGTCAA TCATGTATTGATTAATGTGATATGAGCCTGAAGGCAGCTTCCTAGATGAGGAACTGCCAGTCTGCCACTACAATTTGCCC CTTGTACAGGGAAATTGCCGAAGATGAAAAGTGCCACATTCTAATTATGCACCTTGAGATACTGTATTCCCGATAAAGCA ATTAATTTCTTCTTTCTCTTTATTCATTGAATTTGGTTTTGGGGCTTCTCCTAATGTGCACTACTTTAAAAGTGGTGTAA AATTGCACCAATGCTTTTGACCTGATGCAAGGTTACCCAAATAATTTTTTATTTTATGAGTTAATATAGATAAATTTACA AAAATACCATGGCTGGGTTTCACAGAGTTGCAGAGGCAGGGTAGTCCGCCAGTAAGAGCAACGACGACAAGCTTAAGGTC GATGACGGCCGACGGAGGGCGAGGCCAATATCGTCCAGAGTAACGGCGACGAGGCTATGAAGTAGGGTGGCAGTTCGAGC ATAGTACAAATTTAGATCTGCTTCTCCTATTGGATCCCAAATAAACCAATTTGACCAGAAACACTTTCTTCCACTCATAG CTCAAATCAGCAACCTCCCCCTCTCGGTTTGCTTTACCAGATACAGTGGAAAACCGTGATGGGTCTCTCCCCTCTTCGTG CCAATTCGAGCTCTATCCAAATCCAGATTTGCTTCTCCTCCTTTCCAAGATTCTTTATTTACCATTCACAGCGAAAGAAG GACATGCAGTTGTGTTTCAGCTCTCAAAACGGAACAAAGCATCACTCATTGTCAACGTCCTTCGCTTTCATGGGTCGTTG GCGACGTTGTCAATACAACTACGCCTCGTCGTGATCGGTCTCTCCTTCACCTTTTTGTTTTTTTGAGTAGACTTAATGGT CTTTTTTCTGAAAGGTAAGACTTAATGGTCATAATGCATATTTTCCCATTTTCAATTATTAAATTCTAAAAGGGAAATTA ACTGATTTTACTGGATGTAGCCAGTCAAATGCATTGGTGCAATTTTACTCCAATTTTTAGGTGGTGTATATTAGGCGGCA CCTTTATTTTATGGTTGTAAAGATTCAAAAAGTTTTTTTTTCAGCTTTTCCATGCAATAAGTTAATCTGTTTGGGAACTT CTTGTATACACTTATGGTGATTCAGGTGAGAGATTAAAGTCCTTTTGGATAAACAAGCAACCCTTTGAAGTATGAGCCTG TATACTACTATTCAATAGCTGATGGATGTTAAAGCAATCAACTTGAAAGGCTAAAGAGTTTCAATGATTTCTGACAAAAA TATGAGTAGAAAAGGCTCTTATCCCCTTTTTAATCATCTACTTGCAATTTTATGCGGTCTTTAATTTATGGAAACACATT CCTAGCAATAGGTAGAGTGAGAATTAATATTCATATGATTGTTTCAAAGCTGAAAATTCTTATTCTCGAATATAAATTAT TCCTAGGAATAAAATAATCA
CDS sequence (LotjaGi4g1v0198900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTGCTTTGAGAGCGTTGACAAGATCTGTGTGCAGCAGGAGCACCTCCTCCTACTATAAAACCCTCAATTTCAACAC ACTCTACCACCACCAAACCCGCCGGAATCTAATTCTCGACTCTTCCGCTTCTGAATTCGTCAAGCTTCACAAACTCACTG GCTCAGATTCCGGGATTATCGAGGTTAGCTTGGACAGGCCTGAAGCTAAAAATGCTATAGGGAAAGAGATGTTGCGAGGC CTAAGTCATGTGTTTGAATTGATTAATCAGAACTCCAGTGCTAATGTTGCCATGATCTGCAGTTCAGTTCCTGGGGTATT TTCTGCTGGGGCTGATTTAAAGGAGCGAAGGACCATGAATCAATTTGAGGTTAAGGCTTTTGTGAAATCTCTTCGCTCCG CATTTTCATTTCTAGAGGCAGTTTGTGTACCAACTATTGCTGTTATTGATGGAGTAGCTCTTGGTGGTGGACTTGAAATG GCTCTGGCATGTGATATTCGAATATGTGGAGAAAATGCTCTGATGGGTTTGCCAGAGACAGGACTTGCTATAATCCCTGG GGCAGGTGGAACACAGCGACTACCTAGATTGGTTGGAAAAGCAATAGCAAAGGATATTATATTTACTGGTCGAAAGATTA ATGGCAAAGAGGCTCTGTCCATGGGTCTAGTAAATTACTGTGTTCCTGCTGGTGAAGCTTATTCCAAGGCACTTGCAGTT GCTCGGGATATCAACCAGAAGGGTCCTATAGCTTTAAGGATGGCTAAAAGAGCTATTAACGAGGGAGTTGAGACTGATTT AACATCAGCTTTGGTTTTGGAAGAAGATTGCTATGATCAAGTGTTGAATACTAAAGATCGACTTGAAGGCTTGGCTGCAT TTGCTGATAAGCGGAAACCAAGGTATACGGGTGAGTGA
Protein sequence (LotjaGi4g1v0198900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCALRALTRSVCSRSTSSYYKTLNFNTLYHHQTRRNLILDSSASEFVKLHKLTGSDSGIIEVSLDRPEAKNAIGKEMLRG LSHVFELINQNSSANVAMICSSVPGVFSAGADLKERRTMNQFEVKAFVKSLRSAFSFLEAVCVPTIAVIDGVALGGGLEM ALACDIRICGENALMGLPETGLAIIPGAGGTQRLPRLVGKAIAKDIIFTGRKINGKEALSMGLVNYCVPAGEAYSKALAV ARDINQKGPIALRMAKRAINEGVETDLTSALVLEEDCYDQVLNTKDRLEGLAAFADKRKPRYTGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 305 | 279 | 9.7E-122 | – | |
| PANTHER | 27 | 305 | 279 | 9.7E-122 | – | |
| Gene3D | 40 | 246 | 207 | 9.7E-68 | – | |
| SUPERFAMILY | 55 | 304 | 250 | 4.02E-77 | ||
| CDD | 56 | 244 | 189 | 1.60282E-66 | – | |
| Pfam | 56 | 304 | 249 | 5.5E-62 | ||
| ProSitePatterns | 146 | 166 | 21 | - | ||
| Gene3D | 247 | 305 | 59 | 1.3E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi4g1v0198900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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