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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0204000 |
| Transcript ID | LotjaGi4g1v0204000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Copper transport protein family; TAIR: AT2G35730.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q8LDS4|NAKR1_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 1; TrEMBL-Plants: tr|I1MV03|I1MV03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0204000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:47329954..47331553) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTGTTAGAGGACTGAGTACCTAACAGTCTGCTAGTTGAATTTCGTAGCTGGAATGTACCAAACCTTGAAATTAAAG CCAATCTCTCATCTCTGCATATCATGTGACGTGAAGAATTTAAACTACATCAATTTGAAAATTCTTTATCCAAACATGAG AATATGAGAAGAAATTTGTTGGTGGATAAAAGAAAAGATAAAGTTTGCTTGCAGTTTGCATTTTGAATATATAAAACCAT AACAAGGAGAGAAGAAACAGAGCTTGGTTAAAATTCATATGGCCATTAACGAAACAGAGATTAGCATGAAGCCCGATGAA AATGAATACCGTTCTCTTCTGTACATGGCGAACTTGACACTCCCCTTGGTAGGTTAGCTTTTATCTGAGATTCATCCTCA ATCTAATCCAAATCTGAATCTCTATTTTGTCTTTTGATCAATTGCACTTTTGGATCAACTTCTTTTTTCCTCAGAATTGA GAAGAAAACTTTGAAACTCAAAAAACTTCTTCTCAGAATTGATGCTATAGTAGAAAGATTTCGAAAAAAGTGCTTGATTG ATTTTTTTATTTTTCTTTAATCTTTTTTTCCCTAGCTACTTCCTTCCTTTGATCCTTGCAGCTAGTGAAACTAGTTTTTG AGAAAACATGCAAACAAACAATTGTTGTTGTTCATGAATCATGATGGATTTCATGTGTAAAATATCATGAATTAGATAAT TGTATGAAGCTCAATACTTTATTTTGTAATGCTTGGTAATTAGTTTCAGGTTGTGGTGATAACAGCAAATATGGAATGTA ATGGTTGTAGGGGCAGAGTTTCCAGAGTTGTCTCAAAAATGACTGGTGAACCTCTCAACTTTGCTTTCTCCTTTATTTAG AAAATTTGATAAATTCAAAGATGAATTCAAATGGTAGAACTAAGTTAAACTGTTCTCTCGGAATATGAATATGATGAATG AAAGATAAAACAGTGAAATTGGAAATTGACAAGATGAACTCAATAACAGAAATTGGCAAATCAGTAAAATGATTCATGTG AAAGATTATATTATAGTCTTTTTTGCTCTCATTATGCTCGTTTAATTTCAGTAAGTGACTCACAGTTTACCAAAGAGGTT TATATCTGTTAAAGACAACAAAATTCAGTAATTAACTTATCCTCACATTGTAAAACCACATTAATATGCAGGGTTGACAG AATACACAATAGATGTGTCCAAGAAAGAAGTAACTCTTAAGGGAGATTTCATAGCACATTGCAACTTCAAGGATGAAAAC CTTAGAAGCATCACCCTGAAGAGCGCTACCATTCGACTAAAGTCCATGTTTTCATGTTTAAATAATTTTGATTAGCACTA GTGTAACAGAAAGTTAATGTATCTACAAAGATTGAAATACAAAGATCGCTTTATTCTTTCCCTCTTTTATTTTTGGTTAC AAAAGAAATATAGACAAAAACTAACTACTACAAAGCCAAGGTAAAAAAGCAGGGGAAAAGGGCAAATCACACTTGTTCAA AACTTTAAGGTATTTAGTGTATGAGTCATCTCACTTATAAAGTGTTCAACTGTCTCCTAATCTTCTAATGTGAGATTTCT
CDS sequence (LotjaGi4g1v0204000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATTAACGAAACAGAGATTAGCATGAAGCCCGATGAAAATGAATACCGTTCTCTTCTGTACATGGCGAACTTGAC ACTCCCCTTGGTTGTGGTGATAACAGCAAATATGGAATGTAATGGTTGTAGGGGCAGAGTTTCCAGAGTTGTCTCAAAAA TGACTGGGTTGACAGAATACACAATAGATGTGTCCAAGAAAGAAGTAACTCTTAAGGGAGATTTCATAGCACATTGCAAC TTCAAGGATGAAAACCTTAGAAGCATCACCCTGAAGAGCGCTACCATTCGACTAAAGTCCATGTTTTCATGTTTAAATAA TTTTGATTAG
Protein sequence (LotjaGi4g1v0204000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAINETEISMKPDENEYRSLLYMANLTLPLVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKGDFIAHCN FKDENLRSITLKSATIRLKSMFSCLNNFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 20 | 38 | 19 | - | – | |
| Gene3D | 30 | 97 | 68 | 6.9E-9 | – | |
| ProSiteProfiles | 30 | 74 | 45 | 9.039 | ||
| SUPERFAMILY | 32 | 74 | 43 | 7.07E-8 | ||
| Pfam | 36 | 74 | 39 | 2.1E-9 | ||
| CDD | 36 | 74 | 39 | 6.03995E-5 | ||
| Phobius | 39 | 109 | 71 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0204000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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