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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0205000 |
| Transcript ID | LotjaGi4g1v0205000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | L-lactate dehydrogenase; TAIR: AT4G17260.1 Lactate/malate dehydrogenase family protein; Swiss-Prot: sp|P22988|LDHA_HORVU L-lactate dehydrogenase A; TrEMBL-Plants: tr|G7JIY5|G7JIY5_MEDTR L-lactate dehydrogenase; Found in the gene: LotjaGi4g1v0205000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:47589042..47590823) extracted from Lotus japonicus Gifu genome v1.2.
AACCAATGTCCGATGGAGTGTTTAGGTAAACTACCCACTGTTTTCTTTTAGAAACCACCCAATAATAACAAACGCAGAGC AGTCAAGCTCAAGCACATGTCCATCAATATTCTTTCATGAACCCGCCTTATTCCCCTTCCTTTCATAATCTAGATCCCAC ACAGAACAACTAGAACATTGACCCACATTGCTTCTATCTTTGACCCCACTCAAATCCCTTCTTCTTCTTCTTCTTCCTTC ATTCAACAGAGACCACAGTTTTAGCAACCCCTTTTACTTGTTTCTAAAGCTCATCACCATGCACAAAAGCTCTTCAGGCT CCACTCTAGGCCCAGGGGGCTTGGACCTAACCCAAACCTTCTTCAAACCCATCACCTACGCCGCCCCTCCCTCCCCCACC AAGCGCCACACCAAGATCTCCGTCATCGGCGCCGGCAACGTCGGCATGGCCATCGCTCAAACCGTCCTCACCCAAGACCT CACCGACGAGCTCTCCATCGTCGACAACAAACCCGACAAGCTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCCT TCCTCCCTCGCACCCGGATCAACGCCTCTGTCGACTACTCTGTCACTGCCGGCTCCGATCTCTGCATCGTCACCGCCGGA GCTCGCCAGATCGCCGGCGAGTCCCGGCTCAACCTCCTGCAGAGGAACCTCTCCCTCTTCAAGCAGATCATACCCGCTCT GGTTCGTTACTCCCCGGACTGTGTCCTCATCATCGTTTCCAACCCCGTCGATGTCCTCACCTACGTCGCTTGGAAGCTCT CCGGGTTCCCACCCAACCGGGTCATCGGGTCGGGCACCAACCTTGACTCCTCTCGCTTCCGTTTCCTCATCGCCGATCAT CTCGACGTCAACGCTCAGGACGTGCAGGTCACTCTCTAATTTCCCTCTTTTCTTTTTATTTTAAATTAATTTTCTTTTTC TATTTTTGTCAATTGGGTATTGTTAATTTTTTGAAAATTAAATGGATAATTAATCAGAAGTATGTTTTTTATTTTTGGAC TGCAATTGAAAGTTTCACATTTGACATTTCAAATAATTTCTAACATGGGCTTAAGCAAGCATCTAGTCAAGGTTTCCTGA GCGGTGTGTATGAAGAAAAATTTGTTGGAACAGACCTACCAATTCAATGTGATCGTCATGCCTTGATGGTATTAGCCTGA TAGCCGCCTGTAAGATACTTTGGCGCACACAAAAAATTAATTTGGGGGTATTCAAAAGATATATGATTTTTGTGCATGCT ATACAAATTACAAATGCTGGTTTCAATTTGAAGTTTGTGATATAAATTGTTGTTGCAGGCTTATATAGTGGGAGAACATG GGGATAGTTCTGTGGCGTTGTGGTCAAACATAAGTGTTGGGGGTGTTCCGGTGATGAGTTTTCTGGAGAAACAACAGATT GCGGTTGAAAAAGAGACGCTGGAGAATATACATAGGACAGTGATAGAGAGTGCTTATGAAGTTATCAGTCTGAAAGGGTA CACTTCGTGGGCAATTGGGTACTCAGTGGCTAGCTTGGCGCGTTCAATTCTGAGGGACCAGAGGAAGATCGACCCGGTGT CTGTTCTGGCAAAAGGGTTTTACGGCATAGGTGATGCAGAAGTGTTCCTGAGCTTGCCTGCGCAGCTCGGGAGAGGAGGG GTGCTGGGTGTGACCAATGTGCACTTGAATGAAGAGGAAGAGCAGAGGCTCAGGGACTCTGCCAAGGCCATCCTTGAGGT GCAGTCTCAGTTGGAGATTTGA
CDS sequence (LotjaGi4g1v0205000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACAAAAGCTCTTCAGGCTCCACTCTAGGCCCAGGGGGCTTGGACCTAACCCAAACCTTCTTCAAACCCATCACCTA CGCCGCCCCTCCCTCCCCCACCAAGCGCCACACCAAGATCTCCGTCATCGGCGCCGGCAACGTCGGCATGGCCATCGCTC AAACCGTCCTCACCCAAGACCTCACCGACGAGCTCTCCATCGTCGACAACAAACCCGACAAGCTCCGCGGCGAGATGCTC GACCTCCAGCACGCCGCCGCCTTCCTCCCTCGCACCCGGATCAACGCCTCTGTCGACTACTCTGTCACTGCCGGCTCCGA TCTCTGCATCGTCACCGCCGGAGCTCGCCAGATCGCCGGCGAGTCCCGGCTCAACCTCCTGCAGAGGAACCTCTCCCTCT TCAAGCAGATCATACCCGCTCTGGTTCGTTACTCCCCGGACTGTGTCCTCATCATCGTTTCCAACCCCGTCGATGTCCTC ACCTACGTCGCTTGGAAGCTCTCCGGGTTCCCACCCAACCGGGTCATCGGGTCGGGCACCAACCTTGACTCCTCTCGCTT CCGTTTCCTCATCGCCGATCATCTCGACGTCAACGCTCAGGACGTGCAGGCTTATATAGTGGGAGAACATGGGGATAGTT CTGTGGCGTTGTGGTCAAACATAAGTGTTGGGGGTGTTCCGGTGATGAGTTTTCTGGAGAAACAACAGATTGCGGTTGAA AAAGAGACGCTGGAGAATATACATAGGACAGTGATAGAGAGTGCTTATGAAGTTATCAGTCTGAAAGGGTACACTTCGTG GGCAATTGGGTACTCAGTGGCTAGCTTGGCGCGTTCAATTCTGAGGGACCAGAGGAAGATCGACCCGGTGTCTGTTCTGG CAAAAGGGTTTTACGGCATAGGTGATGCAGAAGTGTTCCTGAGCTTGCCTGCGCAGCTCGGGAGAGGAGGGGTGCTGGGT GTGACCAATGTGCACTTGAATGAAGAGGAAGAGCAGAGGCTCAGGGACTCTGCCAAGGCCATCCTTGAGGTGCAGTCTCA GTTGGAGATTTGA
Protein sequence (LotjaGi4g1v0205000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHKSSSGSTLGPGGLDLTQTFFKPITYAAPPSPTKRHTKISVIGAGNVGMAIAQTVLTQDLTDELSIVDNKPDKLRGEML DLQHAAAFLPRTRINASVDYSVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKQIIPALVRYSPDCVLIIVSNPVDVL TYVAWKLSGFPPNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSNISVGGVPVMSFLEKQQIAVE KETLENIHRTVIESAYEVISLKGYTSWAIGYSVASLARSILRDQRKIDPVSVLAKGFYGIGDAEVFLSLPAQLGRGGVLG VTNVHLNEEEEQRLRDSAKAILEVQSQLEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 350 | 350 | 5.3E-221 | – | |
| PANTHER | 1 | 350 | 350 | 5.3E-221 | – | |
| Gene3D | 23 | 179 | 157 | 1.1E-62 | – | |
| SUPERFAMILY | 24 | 177 | 154 | 1.76E-63 | ||
| PIRSF | 34 | 350 | 317 | 2.6E-103 | ||
| CDD | 35 | 347 | 313 | 1.98136E-175 | – | |
| Hamap | 37 | 349 | 313 | 37.159 | ||
| Pfam | 38 | 177 | 140 | 1.4E-42 | ||
| PRINTS | 39 | 63 | 25 | 5.3E-53 | ||
| TIGRFAM | 42 | 341 | 300 | 1.7E-114 | ||
| PRINTS | 64 | 88 | 25 | 5.3E-53 | ||
| PRINTS | 151 | 171 | 21 | 5.3E-53 | ||
| PRINTS | 175 | 193 | 19 | 5.3E-53 | ||
| SUPERFAMILY | 178 | 347 | 170 | 7.06E-54 | ||
| Pfam | 180 | 343 | 164 | 2.0E-26 | ||
| Gene3D | 180 | 350 | 171 | 1.9E-62 | ||
| PRINTS | 205 | 218 | 14 | 5.3E-53 | ||
| ProSitePatterns | 207 | 213 | 7 | - | ||
| Coils | 327 | 347 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | L-lactate dehydrogenase activity | Catalysis of the reaction: (S)-lactate + NAD+ = pyruvate + NADH + H+. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0205000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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