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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0205800 |
| Transcript ID | LotjaGi4g1v0205800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|F4NCL3|F4NCL3_BETVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0205800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:47660340..47662911) extracted from Lotus japonicus Gifu genome v1.2.
GTGCAACATTAGAAGTATTCCTCTGGTTCTCAGGATTGAAGGTCAACTTCACAAAAACCTTCTTGATAGGATGCAATGTG ACACAGGAGAGAGTCATTGAGCTGTCAGATATATTTGAAGTATGCGCAGGAGGTTTGCCCTTTGTGTACCTGGGAGTGCC CCTAGGAGATAATCCGAGGAGAAAGTCTTTTTGGAATCCGGTGATTGAAAAGATGAGGCTCAAACTAGGTAAATGGAGAT CCAAATTTCTATCGCTTAGTGGGAGACTAGTCCTCCTCAAAGCGGTTATTGCATCAATTCCTATCTACTACATGTCAATA TTCAAAGCTCCGGTGGGTGTAGTGGGAGAGTTTGAAAAGCTGATGCGCTCCTTCCTTTGGGGAAGCTTAGAAGGGAACCG AAAGATAGCTTGGATTGCTTGGGAACAGATTTGCAGGAACTCGCAGTTGGGAGGTCTTGGTATTGGTTTTCTGGCGTGGA GGAACAAAGCCTTACTCTTGAAATGGGCTTGGCGATTTGGGAGAGAAAGGGATTCTTTTTGGAGACAAATGGTGTGCCAT AAGTATGGGTGGGATGAGAATTTGTTGGTCTTGCATCTAGTGGTGGACAGATTCAACATGTGTTCAACGGTGTTTCAAGA CATTCTCAAAGTGCTATCGGAAGACACTATTCTAGCCAAAGAGTTTCGCGATCAGATTCGATGTGTAATTGGACCGGGTC GATCGGTGCGATTTTGGCTAGACCCATGGGTTGATTCTGCCCCTCTCCATATATCTTTCCCCCGAATGTTTGCTCTATCT AATAACAAGAATGCTTTAATTAGTGAGGTGGGACACAACCAAGGGCGAAAATGGAACTGGCAATTGGAGTTTCGTAGAGA GTGTTTTGGATGGGAGAAAGATGAGGAAGGAAGATTTTATACCACTGTGAATTCATATCTGCCTAGTGCTGGTCGAGATG TAATCCTATGGATTGGTGATCATAAAGGGCTATTCTCAGTCAAAGCTATTTGCGAAGCTATGGAATTACGCCTCTTATCT CCTTTGCCTGGTGTTTGGAACATTCCTAAACGACTCCGCAAAATTATTCCACCAAAAATATCATTGTTTCTTTGGCAAGC GGTTTATAATAAAATTGCTGTCAAGAGTAATCTAGTGGAAAGGGGTATGACATTGGAAAATGAAGGGCGCTGTAGTTTGT GTGGTTTGGTAGTTGAATCAGTAACACATTTGATGTTAGCTTGTGAGAAGACCTACCCTTTATGGTATGGTGTACTTCAC CGAGAGGGGGTGACATGGTGCTGCCCGAGGACCGTTATAGATTTACTGGATGAGTGGCCAGAACTAAGGGCAAAATCTGA TACTGGTCTATGGGATTTGATTCCTTATTCACTTTGCTGGTCTATATGGCTAGGACGTAATGATCTTATTTTTCAAGACA AGGAATTCAATTTGGAACAGATATGGGACCTGCACATTTCTCGGATTGCTTGGTGGATTAAAGCTTGGTGGCGGGAGTAC CCGTACAGTAGCAGCGATTTCCTATTGAATTTTGAGGAGATTAGATTGAAACCTCCAAAGATTAGAAGTCGCAGCAATCA TTGGACACCACCACCCGCGGGGACTCTTAAATTCAATGTCGATGGCTCCTCACATGGTATGCCGGGAAGGAGTGGCATTG GAGGCATTCTTAAGGATTCAGAACGCCAAACCAGAGGTATTTTTTCTAAAGCTACTGGGGACCTTTGGGCTTATGAGGCT GAAGTGAAAGCAATCCTTCATGCTCTCATGTTTTGTCACCAATTTCAGTTGAGGCACATCTTAATAGAGAGTGATTCTGC ATTAGCTGTAGGATGGGTCAATAACAAGGTTAATAGGCCTTGGAAGGTAATTCAAGACCTCAACTTGATTGACTCATTAT GTGTTGAAGTTGATTGCTTAGGGATATCTCATATTTTCAGAGAATCAAATCATTTGGCTGATTATCTTGCTAAGACAGGA TGCTCTAGACAAACTGAAATTTGGGCTATGTTGAGGAACTGAATACAATCATTGAGTAGCTGATTTCTCACTGATATGTT GAGGCATAATTATCTGGAATCAGATTTCTGTCTGAGGCATTTTTTACCGGTTTTCTTTTCGGTTATTTGGCTGTACTGAG TTGGTGATCTGAAGTGAAATATATGGCATTTGGTTCAAGTTTTCTTGGTGCAGATTTCATGTATTTCTTTGCTACTATTT AGCTGGGGAGCTGCTACATTGAGGCATTATTATAAGCAATCAGGTTTATATCTGATGTGGCAATATGGCTTTGGTTTGGT GCAGTTTTTATCTGTTTTACTTATGGTTTTTCTGGCTGCACGTGTGAGGTGATCTGAAGTGGAATATAGGGCATTTTGTC CAAGGTTTTGGTGCAGTTTTGTTTATGAAAATCACTGTTGCTATGCTGTTGGGGATCTACTACATGCTGAATTCATTTCA GCTCCTAGTAGCTAGGAGTCTTTCCTTTCTTTTGCTGGCAGTTTTGTGTCGTTTGTTCTCTAGTTTAGCTTTGGATGCCG TGATGTAATGAC
CDS sequence (LotjaGi4g1v0205800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCTCAAACTAGGTAAATGGAGATCCAAATTTCTATCGCTTAGTGGGAGACTAGTCCTCCTCAAAGCGGTTATTGC ATCAATTCCTATCTACTACATGTCAATATTCAAAGCTCCGGTGGGTGTAGTGGGAGAGTTTGAAAAGCTGATGCGCTCCT TCCTTTGGGGAAGCTTAGAAGGGAACCGAAAGATAGCTTGGATTGCTTGGGAACAGATTTGCAGGAACTCGCAGTTGGGA GGTCTTGGTATTGGTTTTCTGGCGTGGAGGAACAAAGCCTTACTCTTGAAATGGGCTTGGCGATTTGGGAGAGAAAGGGA TTCTTTTTGGAGACAAATGGTGTGCCATAAGTATGGGTGGGATGAGAATTTGTTGGTCTTGCATCTAGTGGTGGACAGAT TCAACATGTGTTCAACGGTGTTTCAAGACATTCTCAAAGTGCTATCGGAAGACACTATTCTAGCCAAAGAGTTTCGCGAT CAGATTCGATGTGTAATTGGACCGGGTCGATCGGTGCGATTTTGGCTAGACCCATGGGTTGATTCTGCCCCTCTCCATAT ATCTTTCCCCCGAATGTTTGCTCTATCTAATAACAAGAATGCTTTAATTAGTGAGGTGGGACACAACCAAGGGCGAAAAT GGAACTGGCAATTGGAGTTTCGTAGAGAGTGTTTTGGATGGGAGAAAGATGAGGAAGGAAGATTTTATACCACTGTGAAT TCATATCTGCCTAGTGCTGGTCGAGATGTAATCCTATGGATTGGTGATCATAAAGGGCTATTCTCAGTCAAAGCTATTTG CGAAGCTATGGAATTACGCCTCTTATCTCCTTTGCCTGGTGTTTGGAACATTCCTAAACGACTCCGCAAAATTATTCCAC CAAAAATATCATTGTTTCTTTGGCAAGCGGTTTATAATAAAATTGCTGTCAAGAGTAATCTAGTGGAAAGGGGTATGACA TTGGAAAATGAAGGGCGCTGTAGTTTGTGTGGTTTGGTAGTTGAATCAGTAACACATTTGATGTTAGCTTGTGAGAAGAC CTACCCTTTATGGTATGGTGTACTTCACCGAGAGGGGGTGACATGGTGCTGCCCGAGGACCGTTATAGATTTACTGGATG AGTGGCCAGAACTAAGGGCAAAATCTGATACTGGTCTATGGGATTTGATTCCTTATTCACTTTGCTGGTCTATATGGCTA GGACGTAATGATCTTATTTTTCAAGACAAGGAATTCAATTTGGAACAGATATGGGACCTGCACATTTCTCGGATTGCTTG GTGGATTAAAGCTTGGTGGCGGGAGTACCCGTACAGTAGCAGCGATTTCCTATTGAATTTTGAGGAGATTAGATTGAAAC CTCCAAAGATTAGAAGTCGCAGCAATCATTGGACACCACCACCCGCGGGGACTCTTAAATTCAATGTCGATGGCTCCTCA CATGGTATGCCGGGAAGGAGTGGCATTGGAGGCATTCTTAAGGATTCAGAACGCCAAACCAGAGGTATTTTTTCTAAAGC TACTGGGGACCTTTGGGCTTATGAGGCTGAAGTGAAAGCAATCCTTCATGCTCTCATGTTTTGTCACCAATTTCAGTTGA GGCACATCTTAATAGAGAGTGATTCTGCATTAGCTGTAGGATGGGTCAATAACAAGGTTAATAGGCCTTGGAAGGTAATT CAAGACCTCAACTTGATTGACTCATTATGTGTTGAAGTTGATTGCTTAGGGATATCTCATATTTTCAGAGAATCAAATCA TTTGGCTGATTATCTTGCTAAGACAGGATGCTCTAGACAAACTGAAATTTGGGCTATGTTGAGGAACTGA
Protein sequence (LotjaGi4g1v0205800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLKLGKWRSKFLSLSGRLVLLKAVIASIPIYYMSIFKAPVGVVGEFEKLMRSFLWGSLEGNRKIAWIAWEQICRNSQLG GLGIGFLAWRNKALLLKWAWRFGRERDSFWRQMVCHKYGWDENLLVLHLVVDRFNMCSTVFQDILKVLSEDTILAKEFRD QIRCVIGPGRSVRFWLDPWVDSAPLHISFPRMFALSNNKNALISEVGHNQGRKWNWQLEFRRECFGWEKDEEGRFYTTVN SYLPSAGRDVILWIGDHKGLFSVKAICEAMELRLLSPLPGVWNIPKRLRKIIPPKISLFLWQAVYNKIAVKSNLVERGMT LENEGRCSLCGLVVESVTHLMLACEKTYPLWYGVLHREGVTWCCPRTVIDLLDEWPELRAKSDTGLWDLIPYSLCWSIWL GRNDLIFQDKEFNLEQIWDLHISRIAWWIKAWWREYPYSSSDFLLNFEEIRLKPPKIRSRSNHWTPPPAGTLKFNVDGSS HGMPGRSGIGGILKDSERQTRGIFSKATGDLWAYEAEVKAILHALMFCHQFQLRHILIESDSALAVGWVNNKVNRPWKVI QDLNLIDSLCVEVDCLGISHIFRESNHLADYLAKTGCSRQTEIWAMLRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 6 | 604 | 599 | 7.6E-63 | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 12 | 22 | 11 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 609 | 582 | - | – | |
| Pfam | 289 | 351 | 63 | 3.6E-13 | ||
| ProSiteProfiles | 468 | 598 | 131 | 11.489 | ||
| Gene3D | 470 | 598 | 129 | 1.6E-21 | ||
| SUPERFAMILY | 471 | 600 | 130 | 1.24E-16 | ||
| CDD | 475 | 594 | 120 | 2.00542E-23 | – | |
| Pfam | 475 | 595 | 121 | 9.7E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi4g1v0205800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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