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LotjaGi4g1v0206100.1

Overview

Field Value
Gene ID LotjaGi4g1v0206100
Transcript ID LotjaGi4g1v0206100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein family; TAIR: AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9STF9|PP266_ARATH Pentatricopeptide repeat-containing protein At3g46870; TrEMBL-Plants: tr|A0A151R3G9|A0A151R3G9_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi4g1v0206100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:47724125..47727941) extracted from Lotus japonicus Gifu genome v1.2.

ATAAACCTGACCCATCCCATCTAAGCATCCCTCAACCAAAAACATAAAAAGAACTGGCCCACCTCTCTCACTTTCTCACC CATGAGTCACCCATCTGCAGCCGCACAACAGCACACGGTTTCTGGAGAGTAAACTCACTTTCTCCTCTCTCGCCGGCCGC CGCCTCACACACGCGGCACGCCCACTGCCACAGCCCACATGCACCGCCCCTGACCAAACCTCTGTTTCGCAAAGCCTTGC CTTGATTTTGCAGGTAAAAGCTTTGAATCAATGGAACTATCATTAACTATGGAAGTTACAGACTTACAGTTATGGAATTG ATTTGGTTCATCATGTTTACTTAGTAATCACTTAGGCTAGCAACATTTGGAATGAGAAAAGACCAATGTATTTGCATTTG CATTTGCATTATCTTTAGCTTCCAGGAATTTCGTTTGTTGATTTCTTAATATTCAACGAATCATAAAGATGATATCAAAT TAAAAGAGAAGAGCTAAAAGCTTACCTTTCTAGTCCCAATCATAGTCTCTTCGTTAGGAATACTTGAACATGTAGATATA GACTAAAGGTTCTTCATCCCAAGCTCATATTCAGTGAGAAGAAAATAAATTAAAATAGGTTCTGATTTTTCATGATTTAT ATCGAAATCATAAATCCTTAAACATACTCTTCAACCGGAGAGAATAACATGACATTGCAAAAACATCTCACAAAAATTGT GAAATTATTTGAGTGCAATGGCGTCGGGTGATCCACTTAGCCGATCTCATTTAGTGGGATAAGGGTTAATACGTTTGTAT TCCGGTCTCCAACTTACTTTGCTCGATTTCTTGATATTTCTGCAGTCCGATGGCGAGTCGTTTCTTCTCAAAAAAATTGG GAATCCGTAATTTGGCTTCAATATTTAGAGTTGGAGAGTTTGTGAGAAGTAGCAAGTCCATTAGTGACACTTCAACTTCG TTGCCATTGAGATCTTCTGTTGCAGTTTTCGACCGCAAATATGTGTGGGGTTTCAGGGAATACCATGACGGAAGGCCAAG GGGTCCCCTTTGGAGGGGAAAGAAGCTCATTGGCAAAGAGGCTCTCTTTGTGATATCCGGGTTGAAGAGGTTCAAGGACG ACGACGATGTGCTTCACAAGTTCATCAAAACCCATGTTCTGCGCCTCTTGAAGGTTGACATAATTGCTGTTCTCACAGAA CTTGAGCGCCAACAAGAAGTTTCTCTCGCTTTCAAGGTTTCTTCTCAATCCCACCTTGCTGATCTTTTACTCTTTTATTC TTGTGTTAGTTGCCTGCAATCTGTTTGTGAAAATGATTCATTGGTAATTTTTTTCTGGGTCCAATGAAAGCAATGTGTTA TAGCATGCCCATTTATCTGGAAATTGTTGATTGATGCTTAGGTTTTGTTATTGGTGATTCATGTAACTATATCTGTAATA TTGGGATCACAAGAAACTGAATGGATTTTCAGGTGTTTAAGGTGATGCAAAAGCAGGATTGGTACAAACCTGATGCATTC TTGTATAAGGACTTAATTATTGCACTTGCAAGGTCTAAAAAGATGGATGAAGTGTTGGAATTGTGGGAAAGCATGAGAAA AGAGAATCTGTTCCCTGATTCTCAGACTTATACTGAAGTCATAAGGGGCTTCTTGAATTATGGTTCTCCTGCAGATGCAA TGAACATATATGAGGATATGAAGAATTCTCCGGATCCACCAGAGGAGTTGCCATTCAGAATCTTGTTGAAAGGACTCTTG CCACATCCTCTTTTGAGAAACAAGGTGAAACAAGATTTTGAGGAGATCTTCCCGGATTCCAGCATTTATGATCCTCCACA AGAGATATTTGGCGTCCGATAAGGTTCAAACCTTTTTGCTCTTCTCCTCACTCTGTTAGGTGTTGTCCTGTTTTCAATAG TTTGCTTTTTAAAAAACTGCTTTTTTTTCCTTGGTATTCATGAGCACATTTTTGTACAAGGTACAATCTAAATGAACTTA ATTTAAAGACTCCTCCTCCAGAATCACATGTTCTTGAACAAACCAAATATATGTGTGGGTCAAAAGGTGAAAAGACATGA AGTTTGATACCATTAGATTATTGAATTGAAAATATATGGAAAAATTCAACAATGAAGAATATATTATTGGTACGTGATGT GAAAATTTGTTCTGTGAAGAAAAACATGAGTGTTTCATTTATTGGCAATGTTGCTGGATACACATGCTGCCATAATTTGT TTGAGGATAAATCTTTAATCCTTCTTGATTGTTACAGATAGTGTTTCAGATGCAAGGGGGATCACCATCATTATTTCATT GTGTTGTCATAAACCACTATATTTTCTTAGTAGTTAGTAGTTGGTTGTTGCTGTTAGTTGAATTGGCTGGTTAGGTAATT GTGCTTCATTGTTGCTAGTTGATTTTTAGTTCGGGTACACCATGCATTTGGGTATAAGTAGATGATCAGTATTGTTCTAT AATCATCAATTGAATCAATATGCACCCACCTTGATTTTCCTCTATCTCCTTCTCCACCAAGACTCCTCCCTCTCCCTCTT GGCTAGGTCCATCTTAATTTACTTACCAGACCAGAATGGATGTCCTGTCTCTCCAATAGTAACAGCCATGATTGACTCAT GGCTTTTGTGATTGTCATTTTTACCATGGTTTCAGAATAGGAAGAGACAAGTGTTTTCATCTGGGTCGGTGGAGGCATTG AAACTATTTTCTTGCTAAAATACATGTCATACTAAACCTCTATTATAGCTGACACTTATCTTTCACCTACTTCAGTTTCA GTAGTTTAATACCTTCTCCATTTTTTATTATTTTTTCTATAACTAGACTTCTTAGAAAATTTGGAATTAAAAGAAATATT CTTTCTTGTGAAAAGAAATATTTTATGTTCTGAACCAGTTATCCAGTGAACATGAATGGCTTATTGATCTAAGATTTTTC CCCTTTTTTCTGTTCGCAATACTTTTTGATTTAAGCTCTTCCGTTTATTCATACTAAAGAGCTAAGATATATGCTGTCTT TTTGTACAGAACATGCTTCTCCGATGAAAGAATGTGAGCTGGTCAACCATTTTCTGATGCAAATGTTGTGTTGGACAGTG AGTGGTCTGTCCCAGTGGTTATTTGGGACTAAATTGACAGTGAGTGTTCTGTCCAGGGGTCATTTGAGACCAAATTGCAA GATATTGGTTTCTCGCATATTTTGTATGCTTGAAAGAATGAGTAGAGTTGCAGAAATCCATCATTATCGAGTGAATATTA CAGATCTTTCTGTAAGTTGTGATTTATCTAGGATGTGATTGTATTGCACTTGATTAAAGATGAGTTTTTTCTGCATAGCT TCCTCCTTTTCATACCCGCAACATATCTGTGCATTTGATCATCGACAATTCTTCTGATTATCTTGATCATGATTCATGAT CAAGTGTTATGATGCGTATTACAAAAACTGCAGTTTACGGTTTGTTCATGTTTATTCCTGTGCATTTTGTTTTGATTTTT TGTCAGTAGTAATAAACTATTAATATACTCATTGCTGCCAATTTTATATACTAGATGCAGTTCAATTCGGATGGGGTTAT CAGATTATACTTCTTCATATAACACAGAAGTTAGTTTTTTTTATAATGTACATTGGTCGTAATTGAAATTGTAGTCTTAT CAATCTTATTCTTCTTCTGTATGTTCAATTTCACTTTATCACAACTGCTTGAAGGCATGGGTAATAGATTTTTTCTTATT CACTGATACTGCTGTATTTCTTATGGATACTCTTAATTCGCTATGGGTATGCATTAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0206100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAGTCGTTTCTTCTCAAAAAAATTGGGAATCCGTAATTTGGCTTCAATATTTAGAGTTGGAGAGTTTGTGAGAAG TAGCAAGTCCATTAGTGACACTTCAACTTCGTTGCCATTGAGATCTTCTGTTGCAGTTTTCGACCGCAAATATGTGTGGG GTTTCAGGGAATACCATGACGGAAGGCCAAGGGGTCCCCTTTGGAGGGGAAAGAAGCTCATTGGCAAAGAGGCTCTCTTT GTGATATCCGGGTTGAAGAGGTTCAAGGACGACGACGATGTGCTTCACAAGTTCATCAAAACCCATGTTCTGCGCCTCTT GAAGGTTGACATAATTGCTGTTCTCACAGAACTTGAGCGCCAACAAGAAGTTTCTCTCGCTTTCAAGGTGTTTAAGGTGA TGCAAAAGCAGGATTGGTACAAACCTGATGCATTCTTGTATAAGGACTTAATTATTGCACTTGCAAGGTCTAAAAAGATG GATGAAGTGTTGGAATTGTGGGAAAGCATGAGAAAAGAGAATCTGTTCCCTGATTCTCAGACTTATACTGAAGTCATAAG GGGCTTCTTGAATTATGGTTCTCCTGCAGATGCAATGAACATATATGAGGATATGAAGAATTCTCCGGATCCACCAGAGG AGTTGCCATTCAGAATCTTGTTGAAAGGACTCTTGCCACATCCTCTTTTGAGAAACAAGGTGAAACAAGATTTTGAGGAG ATCTTCCCGGATTCCAGCATTTATGATCCTCCACAAGAGATATTTGGCGTCCGATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0206100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASRFFSKKLGIRNLASIFRVGEFVRSSKSISDTSTSLPLRSSVAVFDRKYVWGFREYHDGRPRGPLWRGKKLIGKEALF VISGLKRFKDDDDVLHKFIKTHVLRLLKVDIIAVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKM DEVLELWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEE IFPDSSIYDPPQEIFGVR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46870
2 257 256 2.0E-129 –
PANTHER
PTHR46870:SF2
2 257 256 2.0E-129 –
Gene3D
G3DSA:1.25.40.10
72 258 187 3.4E-48
IPR011990
Pfam
PF13041
142 190 49 1.3E-8
IPR002885
ProSiteProfiles
PS51375
143 177 35 10.731
IPR002885
TIGRFAM
TIGR00756
149 178 30 1.6E-5
IPR002885
ProSiteProfiles
PS51375
178 212 35 9.788
IPR002885
TIGRFAM
TIGR00756
181 207 27 0.0029
IPR002885

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0206100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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