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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0206100 |
Transcript ID | LotjaGi4g1v0206100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9STF9|PP266_ARATH Pentatricopeptide repeat-containing protein At3g46870; TrEMBL-Plants: tr|A0A151R3G9|A0A151R3G9_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi4g1v0206100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:47726080..47727092) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGAGTCGTTTCTTCTCAAAAAAATTGGGAATCCGTAATTTGGCTTCAATATTTAGAGTTGGAGAGTTTGTGAGAAG TAGCAAGTCCATTAGTGACACTTCAACTTCGTTGCCATTGAGATCTTCTGTTGCAGTTTTCGACCGCAAATATGTGTGGG GTTTCAGGGAATACCATGACGGAAGGCCAAGGGGTCCCCTTTGGAGGGGAAAGAAGCTCATTGGCAAAGAGGCTCTCTTT GTGATATCCGGGTTGAAGAGGTTCAAGGACGACGACGATGTGCTTCACAAGTTCATCAAAACCCATGTTCTGCGCCTCTT GAAGGTTGACATAATTGCTGTTCTCACAGAACTTGAGCGCCAACAAGAAGTTTCTCTCGCTTTCAAGGTTTCTTCTCAAT CCCACCTTGCTGATCTTTTACTCTTTTATTCTTGTGTTAGTTGCCTGCAATCTGTTTGTGAAAATGATTCATTGGTAATT TTTTTCTGGGTCCAATGAAAGCAATGTGTTATAGCATGCCCATTTATCTGGAAATTGTTGATTGATGCTTAGGTTTTGTT ATTGGTGATTCATGTAACTATATCTGTAATATTGGGATCACAAGAAACTGAATGGATTTTCAGGTGTTTAAGGTGATGCA AAAGCAGGATTGGTACAAACCTGATGCATTCTTGTATAAGGACTTAATTATTGCACTTGCAAGGTCTAAAAAGATGGATG AAGTGTTGGAATTGTGGGAAAGCATGAGAAAAGAGAATCTGTTCCCTGATTCTCAGACTTATACTGAAGTCATAAGGGGC TTCTTGAATTATGGTTCTCCTGCAGATGCAATGAACATATATGAGGATATGAAGAATTCTCCGGATCCACCAGAGGAGTT GCCATTCAGAATCTTGTTGAAAGGACTCTTGCCACATCCTCTTTTGAGAAACAAGGTGAAACAAGATTTTGAGGAGATCT TCCCGGATTCCAGCATTTATGATCCTCCACAAGAGATATTTGGCGTCCGATAA
CDS sequence (LotjaGi4g1v0206100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGTCGTTTCTTCTCAAAAAAATTGGGAATCCGTAATTTGGCTTCAATATTTAGAGTTGGAGAGTTTGTGAGAAG TAGCAAGTCCATTAGTGACACTTCAACTTCGTTGCCATTGAGATCTTCTGTTGCAGTTTTCGACCGCAAATATGTGTGGG GTTTCAGGGAATACCATGACGGAAGGCCAAGGGGTCCCCTTTGGAGGGGAAAGAAGCTCATTGGCAAAGAGGCTCTCTTT GTGATATCCGGGTTGAAGAGGTTCAAGGACGACGACGATGTGCTTCACAAGTTCATCAAAACCCATGTTCTGCGCCTCTT GAAGGTTGACATAATTGCTGTTCTCACAGAACTTGAGCGCCAACAAGAAGTTTCTCTCGCTTTCAAGGTGTTTAAGGTGA TGCAAAAGCAGGATTGGTACAAACCTGATGCATTCTTGTATAAGGACTTAATTATTGCACTTGCAAGGTCTAAAAAGATG GATGAAGTGTTGGAATTGTGGGAAAGCATGAGAAAAGAGAATCTGTTCCCTGATTCTCAGACTTATACTGAAGTCATAAG GGGCTTCTTGAATTATGGTTCTCCTGCAGATGCAATGAACATATATGAGGATATGAAGAATTCTCCGGATCCACCAGAGG AGTTGCCATTCAGAATCTTGTTGAAAGGACTCTTGCCACATCCTCTTTTGAGAAACAAGGTGAAACAAGATTTTGAGGAG ATCTTCCCGGATTCCAGCATTTATGATCCTCCACAAGAGATATTTGGCGTCCGATAA
Protein sequence (LotjaGi4g1v0206100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRFFSKKLGIRNLASIFRVGEFVRSSKSISDTSTSLPLRSSVAVFDRKYVWGFREYHDGRPRGPLWRGKKLIGKEALF VISGLKRFKDDDDVLHKFIKTHVLRLLKVDIIAVLTELERQQEVSLAFKVFKVMQKQDWYKPDAFLYKDLIIALARSKKM DEVLELWESMRKENLFPDSQTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFEE IFPDSSIYDPPQEIFGVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 257 | 256 | 2.0E-129 | – | |
PANTHER | 2 | 257 | 256 | 2.0E-129 | – | |
Gene3D | 72 | 258 | 187 | 3.4E-48 | ||
Pfam | 142 | 190 | 49 | 1.3E-8 | ||
ProSiteProfiles | 143 | 177 | 35 | 10.731 | ||
TIGRFAM | 149 | 178 | 30 | 1.6E-5 | ||
ProSiteProfiles | 178 | 212 | 35 | 9.788 | ||
TIGRFAM | 181 | 207 | 27 | 0.0029 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0206100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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