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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0212000 |
| Transcript ID | LotjaGi4g1v0212000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger A20 and AN1 domain stress-associated protein; TAIR: AT4G22820.1 A20/AN1-like zinc finger family protein; Swiss-Prot: sp|O49663|SAP9_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 9; TrEMBL-Plants: tr|A0A0D2QM04|A0A0D2QM04_GOSRA Uncharacterized protein; Found in the gene: LotjaGi4g1v0212000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49385050..49388809) extracted from Lotus japonicus Gifu genome v1.2.
TAGGATTCAATTTTTATTTTATTTTCTTGAATGGAATAGTATAGAATTCAATTTTTTTTAACGTGAAATCAAATTAGAAA GATCTAGAACACAATGTTGAAATTCCTTCCATGTAGTATAAAAACAACCTTGTTCCCAACAACAAGCTCTATCTATATCA ACGCGAATCGTTGCTAGATTTAATTTTCCGAGATCAAATCACAAACCTTAGCATAATCCTCACGCAATTGCATTCTTTTC TTTCTTTATATTCACCAAACCAAACCAAACCAAACTTGCTTCAATTTCAAAACCCTACACAACAAAGCACCAAGAATCCA ACTATCCAAGATCATCAATCAATCAATCACCAACAACAACATGAGTTCTCAGCAGAACGATGGCATGAGCTACTCCTCCC CTTCGGAACCAAAACCCTGCGCCAACAACTGCGGCTTCTTCGGCACCGCCGGCAACAGCAACCTCTGCTCCAAGTGCTAC CGCGAATCCATCACCCAAGGCGAACGCGCCGCCTCCGCCAAAGCCGCCGTCGAGAAATCCCTTCTCATCCCCGTCACCGC CGCCTCCGCTGATCCGCCTGCTCCTGCGGCGGATCCCTCTCCCTCCGCCTCTGCTGATCCGGCGTCTGGCCTTGACGCGC CGCCGTCGTCGAACCGATGCGGTTGCTGCAAGAAGAAAGTGGGCTTGACCGGGTTTGTGTGCAAGTGTGGGGCCACGTTC TGCGGGACCCACCGGTACCCCGAGAAGCATGAGTGCTCGTTTGATTTCAAGGTTGTGGGGCGTGATGCTATTTCGAAGCA TAATCCTGTGGTTAAGGCTGACAAGATTCAAAGGTTTTAGGTTATTGTTTTTAGATTTAGATCAGATTAATGTTAGGGAA TGATGTTTCTTTGACAAATTCATAATTGACTTTGGTTATTTTGAAGCTTTGAATACAAGAAAAATTTGATTGTTCTTTAT CGTTGTTGCAAATTTCTTTTTAGTGGTAGGGGACATTGTGTTGTCTTATGATTGCAAGGTTATATGACTCTTCTTTAGGT GAAGAGGATTTTCTTCCTTTATTCATACTAAAAAGTGTATGAATATACTAGGTAAATAATAGAGAAGTTCAATAATTTTC TGGTACGCGCACAATAATGTGTTTTATACTTTTATTTGTATTCATTTTCATGTTTGGTTTAATATTTCTTGAAGTTCCTT GATTTGTTGTGTATCGTGCTTTTTTTCATTAATCTACTCTTTTGCTTATTAGTACTATACGGCACTGCTTCCTTCAAAAT TTAACATTGTTTGGTTATCATTCTTGACTTGTGATTTTTTAATGTTTTGGTCATGTCACACTTTATGGAGATCGAATCCA TTGTTTTTGTTCTTGTTTAATTTAATGTCTCTTCCTCCTTACCCTTCTAAGTTCCTTTGGAGAAGGAATGAAAGGGGACT CGACTAGAATGAGCGATCGGGGTAAGGAACACCGAATTCGGACCTAGTAGGGTATAGATGGGTGGGAAGGTTTGGGTTTA TTCTCTTGAGGTGAGTGACTTACGTTAAAATGGACGAACTTGTTCAAGCTGACGATAAACATATTTTATCATGTGCATAT TTTATTATGTGCCTTGCTAAGATCGTTGTAGCTTAGATATTTTGTTTTTGAATAAGTCAAGGCATACAACCCCCCATATT TGGCACATGTATCCATATGTGGTTTTTGGGTGGTTACTCAATAATCTAGGGGTTTGGATGTATATAGAGATGAATTGTTG TAGGAAGTTTTATGTTCACTTTAATACTGAAAAGACTAGGTGTAACACCCCATTTTTTGTTATTTGGTTATTTAGTATTT TATTTTAATTACTATTATGCTATATGGTAATTTGATGAATTATGTGATATATGGAGTGAGTAAATTATTTAAATTATATA TGAGTGATATTTGTGATATAATTTAAATCTTATGTGATATAGTATAAGATTTAGATAAATAAGGTTGTTAGGTTTTTGTG TGAGTAATTGAGAGTGGGGCCCATTGTATGGCTATTTAAGGGTTAGGAGTGAAATAGAAAGAAAGAAAAGAAAAAAAAAT AAGGATTAGAAGAGAAGCAGAACAAGAAACACGTGAAAGCAGAGAAGGAGAGGAGAAAAGAGGAGAAAACTTAGAACTGA TCTACAAGAGGTAAGGGTTTGAATTCATGTTTTATGGATTGGTATGATAGTGTATAATGATAGAAAGCATGATTTAGGAA ACCTAGGTTGCAAAAATTCCCAAATTGAAATAGTTAGGGTTTGGTTTTTAGATGATTTTGGGGGTAGATGATAGGCTTGC ATGATGCGCAGAAATTTACGTTCTCTTGTACCCTTTTTCGTGCTATGTTAATGGCCGAATTTGAAGAAGTAGTCTTCATA AAAGTTGTAGGTTTTTCTGTTACGAAACTTTTGCCACTGGTTTCACGTCATTCCGACGTCTGTAGCTCGAGTTATGTGTA TTTTAGTGAGTATAGGTTAAGCTGTCCAGTTTCTTACAAACTGCGGTTAGTGTACGATTTTTCCTGATTTTTGTACTTTG AATTGTGACTTGAAAATTTATAGAGGTTTACAAAACGTGTATACGGAACCATGATAAAAATATTAGATTTTTCTGAGTAT ATTTGATAATTTACATCTGTTTAATAGTTCATTAGATGTGTGGTGCACGCACATGGCGAGTTGCGCAGGAAGATGTCGCA AGATGTCGCGACATGGCGAGTTGCGTAGGGAGATGTCGTGAGATGTCGCGACATGGCGAGTTATTCAGCGACATGGCGAG TTGCGTAGGGAGATGTCGTGAGATGTCGCGACATGGCGAGTTGTGCAGTGAGATGTCGCGAGATGGCGAGCATGAGCATG TCGCGAGTTTTTGGGAAAATTTAGAGAGAAATCCAGTCTTTAGGAAATAGTTGCAGAACCTGTTATATATGAATTATATT TAATTTACATCTATTTTTAATAATCATTATATGATGTTGTTTCTGAATTGACGTTATGTTTGAGATGCTAAGTTGTTGTG ATTGCAAGTTGTATAATTGATAACATGTAATATGTGTTTTGTGCAACTGGTGATGAATATGCTAAAATAATTAGAACTTG GAGATGGTCTGAATATGCATATGTTAGTTGAGTTTTGCACAATACACTGCATAGTTGTCAAGAGGCAATGTTTGCTAGTT CTCGTGGAGGCTAGTGACTTGTCCCAAAACTGGAGTGGTTTTGAAGCCTAGAGCGAGGGCTTTATTGGTGGTTATCTGTC TGGAGTGGACGCGGTGATACCGCTAAGGATAACAACTTTGGTACCAAAGACATTTGCACGGGTCTCACTTGAGTCATATG TGTTATGGTGATATTTTTGGAGAGATTTGATGTGGTGGTAATTAGAGACTATTATATATGTTCTAATTGAGCTATAATTT ATGGAGTATTTGCCATAACTGTGAACTTGATTAATTATGTTAAAATTACATAATTTATTATTTGTTAGTGAATGTGAGTA ATTTATGTGGAGCATAGATAAACTTTTACATTATTTATTATTATGCTTATCCATATGATATGAGTTCTCACCCTTCTGTT GGAATGATGTTCTATACGACATCGCTCAGGTACCGAAGATAGTGAAGCTTCTCGCGAGGGTTAGTTGGAGGAGCTAGTCT TTCATTTACGGTTTAGTTAGGGGAGTCATGCTCTGTTATGTAACACCGGGAAACGTTTAGTTTTGTACCTTGATGTTAAG
CDS sequence (LotjaGi4g1v0212000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCTCAGCAGAACGATGGCATGAGCTACTCCTCCCCTTCGGAACCAAAACCCTGCGCCAACAACTGCGGCTTCTT CGGCACCGCCGGCAACAGCAACCTCTGCTCCAAGTGCTACCGCGAATCCATCACCCAAGGCGAACGCGCCGCCTCCGCCA AAGCCGCCGTCGAGAAATCCCTTCTCATCCCCGTCACCGCCGCCTCCGCTGATCCGCCTGCTCCTGCGGCGGATCCCTCT CCCTCCGCCTCTGCTGATCCGGCGTCTGGCCTTGACGCGCCGCCGTCGTCGAACCGATGCGGTTGCTGCAAGAAGAAAGT GGGCTTGACCGGGTTTGTGTGCAAGTGTGGGGCCACGTTCTGCGGGACCCACCGGTACCCCGAGAAGCATGAGTGCTCGT TTGATTTCAAGGTTGTGGGGCGTGATGCTATTTCGAAGCATAATCCTGTGGTTAAGGCTGACAAGATTCAAAGGTTTTAG
Protein sequence (LotjaGi4g1v0212000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSQQNDGMSYSSPSEPKPCANNCGFFGTAGNSNLCSKCYRESITQGERAASAKAAVEKSLLIPVTAASADPPAPAADPS PSASADPASGLDAPPSSNRCGCCKKKVGLTGFVCKCGATFCGTHRYPEKHECSFDFKVVGRDAISKHNPVVKADKIQRF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 157 | 156 | 6.2E-55 | – | |
| PANTHER | 2 | 157 | 156 | 6.2E-55 | – | |
| ProSiteProfiles | 14 | 48 | 35 | 9.915 | ||
| SMART | 17 | 41 | 25 | 4.5E-6 | ||
| Pfam | 19 | 41 | 23 | 1.1E-8 | ||
| SUPERFAMILY | 20 | 61 | 42 | 2.14E-10 | – | |
| MobiDBLite | 68 | 97 | 30 | - | – | |
| Gene3D | 77 | 155 | 79 | 4.4E-26 | ||
| SUPERFAMILY | 94 | 154 | 61 | 8.11E-27 | ||
| ProSiteProfiles | 97 | 140 | 44 | 12.333 | ||
| Pfam | 100 | 136 | 37 | 3.7E-9 | ||
| SMART | 100 | 137 | 38 | 2.3E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0212000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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