Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0212400 |
| Transcript ID | LotjaGi4g1v0212400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cornichon family protein; TAIR: AT1G12340.1 Cornichon family protein; Swiss-Prot: sp|Q3EDD7|CNIH2_ARATH Probable protein cornichon homolog 2; TrEMBL-Plants: tr|I3T8Z8|I3T8Z8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0212400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49451914..49454547) extracted from Lotus japonicus Gifu genome v1.2.
GATAGGAGTCTCATTTGTCCCTATGTCCAGGTTTTGTTACTTATCTCATTCAGCTTCAGAGCCTTCTGAAGAAGGTTAAG TTTTATTTGTAATGCCTCTAAATGTGCTTGTGTGCTTGTAATTCTCTGACTGTGCTTAACATTTGTTGCAGTTAATGTGT CTGGCAGACCTTGAATTTGATTACATAAATCCTTATGATTCCGCATCTCGAATAAACAAAGTGGTTTTGCCTGAGTATAT TACAGTAGGTGTCCTGCTCTGCTTCTACGTTGTAACAGGGCATTGGATAATGTCACTGTTCTGCCTTCCTTACCTCTACT ACAATGTGAGATTGTAAGTTTTCTGCCAAATCTACAAATAAGCTGTGCGAGTTTATTATTTATGAATGACAACTGATTGA TGAATATTCTGTTTTCAAGAGACATTAAGTGAAAATGTAACTAGTTGATGGATGTCAGGTTGAGTTAGAGTTAGGATCTT TGCATTCTTCAGCATCTTGCTAGTGTGATTTCCTCTTAAAATGCAACTAGTTGATGGCACATGAGATAAGCCAATTTGAT AGCAATGATGTACATTATGGTTTATGCTTCAAAAAGTTGCTAAGCAGGCTACACTTTTACTACTGATAATTACTTGCTTT TCAAAAAAAAAAATGCTTTTCAAAAAAAACTACTGATAATTACTTAATATTCTGTTTCTTAGAAACCTCTTTAAGAGGTA CTATTCATGTCTCTGCAGTAGTTGGTTGTTGACTCCGGTTTGATTTTGAATTTGGGTCTTTGCATTCTGAATTCTAATTT GAGTTTAGGAATTATATGGTCATGGTGTATGAGTAAAAGACCAAATGCTAGAGTAAGAAGATTTGATGCCTGAATCGGTA AATAGAGTTATTGCCGCAGCAACTCTAGAGTAAGAAGGGCAAAAAGCACACACGCTTTAAGTAGTAGTAGGCGTATCCGT GCTGGATTATATTCATACTAGACACTTTCATAGATACTTAGGATACTGCCATAGTAGTCAATCCCGGATAGCGGCGCGTA GCGGCCGGCCCCAAAAGTGGGATAGCGTGATAGCGCATAGCGGGATGGCCGCTATTCTGAATTTTTTTATGTAATTTTAT ATCATTAATAGTTTAATACTATATACATATAAATAGCAAACAATGTCAAATATTGCCTAAAATTCATAACATTCATAATA GAAATAAAAATCATAAGTCTTGAACAATAACACACAACTAATAACTTCTCAAAAGCAAGGTAAAGAAGTCGAATTTGCAA ATCTGAATGAAGAATGAAGCTTAATTCTTTCAATTTTGACCTATAATGGCCCTGAGAAGTCCTAACATGCCCATAAAAAG GTTCCCCAACGATTTAAAACAAAGAGGCTTGAGTCATTTTCTCCTTCGTTCATATAGCGCCGCTATTTCCCGCTATTGGC CGCGATCTGCCGCTATTTTGGCCGCTATTCGCGCCGCTACGACCGCTATTGTGAAGTTGGCCGCTATTTCATCTCAATAG CGGCAGGGAGCCGCTCCGCTCCGCTACGCCGCTATAGCGCCGCTATTTGCCGCTATTGACTACTATGGATACTGCTAGTT ACATTTTATAATTTTGTTAACCTTTTTTTACCAATTCAGATAGGAATGCTACAATTTTTAGATTAATTATAACATTTTAT TATGTTTCCAGGGACTCATACTCAAGTTCAAAACATTGATTCCCTCTTTAGATTTAATATTTGTATTTAATGTTAATATT AATTTTATACACTGTATCATAGTCGTATCAAATCTCAATTTTTAGAATTTGTCCTATTCTTATACCTGCGTGTGTTTTCT AGCTTGATGCATAGTTTCGCACCTTGGGGGGGTGCGCGCAGGAGATGCCTATTAAATGAAAGTATATGAACATTTCTATC AATATAATAGGTTCCCTCACATAAGAGTCATCTAGGCTTAAAGTGTGGACATGGATAGGCCCATCGAACCTAATGTTGAA CTTGAGCTTTTATTTAGAAGAATGGGGGTATTGAAGATCAAATCTAGACCATTTGATCATAGAAACTCTTATACCATGTC ATGAGCTAACTATCTCTAAAGTTTTAGCTGTTAAATGAAAACACATAAATGGTTCTCATACCTAGCATTCAGTACTATTA GTTTCTCGTCAACATCATCAATTATAGATTTTGCATATAGTCACACGTATCATTCGATATCTATATCAATATCTGTATGG GTGACATAGCTGCCATATTATTTGGTATTTGGTTTCTTATAGTTAGGGGATAACAGAGGGTTTTGCGTGCTTTAATCATC CTTGAAAGCTTAATATAATGGAACATGCTCCTTATGGTCTTGCTGATTGCATATTTTTGTCACTTTGATCAGGTACAGAC AGGGAAAACATCTAGTTGATGTTACAGAGATTTTCAACTTGCTTCCTTGGGAAAAGAAGCAACGGCTTTTCAAGCTCTTC TATGTTATTTTTATGCTTTTCCTCTCCTTATTTTGGTATGCTAATTAGATAAAAGCCTCGAACTCAACAAAAAAAAAGTC CTATTAACTTATTCTTACCAAGTGCGTTTTGCTGCAGGTTGATATACACATCACTGGATGACCAAGATAACTAG
CDS sequence (LotjaGi4g1v0212400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTCTGGCAGACCTTGAATTTGATTACATAAATCCTTATGATTCCGCATCTCGAATAAACAAAGTGGTTTTGCCTGA GTATATTACAGTAGGTGTCCTGCTCTGCTTCTACGTTGTAACAGGGCATTGGATAATGTCACTGTTCTGCCTTCCTTACC TCTACTACAATGTGAGATTGTACAGACAGGGAAAACATCTAGTTGATGTTACAGAGATTTTCAACTTGCTTCCTTGGGAA AAGAAGCAACGGCTTTTCAAGCTCTTCTATGTTATTTTTATGCTTTTCCTCTCCTTATTTTGGTTGATATACACATCACT GGATGACCAAGATAACTAG
Protein sequence (LotjaGi4g1v0212400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCLADLEFDYINPYDSASRINKVVLPEYITVGVLLCFYVVTGHWIMSLFCLPYLYYNVRLYRQGKHLVDVTEIFNLLPWE KKQRLFKLFYVIFMLFLSLFWLIYTSLDDQDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 100 | 100 | 3.2E-33 | ||
| SMART | 1 | 100 | 100 | 7.9E-38 | ||
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 111 | 111 | 3.4E-66 | – | |
| PANTHER | 1 | 111 | 111 | 3.4E-66 | – | |
| Phobius | 28 | 56 | 29 | - | – | |
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 57 | 84 | 28 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 85 | 104 | 20 | - | – | |
| Phobius | 105 | 112 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi4g1v0212400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…