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LotjaGi4g1v0213800.1

Overview

Field Value
Gene ID LotjaGi4g1v0213800
Transcript ID LotjaGi4g1v0213800.1
Lotus japonicus genome version Gifu v1.2
Description Peptide chain release factor 1; TAIR: AT1G62850.2 Class I peptide chain release factor; Swiss-Prot: sp|Q8R035|ICT1_MOUSE Peptidyl-tRNA hydrolase ICT1, mitochondrial; TrEMBL-Plants: tr|A0A1J7HB25|A0A1J7HB25_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0213800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:49716697..49722463) extracted from Lotus japonicus Gifu genome v1.2.

GTGGAAACAAATTATGTTGATGAATGACAGCGATGATGAGAGAAATAGGAAACTCATAGCAGATAGCGGTAGATGTTAAA AAAAACCAATTAGATTTTAAAAATGAAAAAAAAATTATTTAATTTGATTGATTAAGGCACACGTCTTTAAAATCTTATTT GGTGAGAGTGTAAAATAAAAAAAATTAACCTAAAAAAATCCAATGACGAAATAGGAATCGAAAATCAACCGGAGAACGAA GGCCAAAACAAAACAAAAGGGACAGGGTTGGGTATTGTGGACGAGGTTCATACCTTGATGAATGCTATGGCTTCAGCCAC CAGTAGAATGGTGCTGAATGAAATGTTGCACCTCTCTTTCACACTTCCATTTTCTTCGCTTCGTGTCGGTTCTGTGCTTT CTCGTGCTCTCCCCTTCTCTCCATACAGGAATACATCACTTCTTCAATCACGCCACTCTCGCTTCCCTGCAATTCGATGC GCTTCTTCAAATTCGGATTCTGGCAACAAAGTGTCGTCTCGGTTATCGCAGGTTCAGCATCTCCTCCATGAAGCTGAACA ACGAGCTCTCTCTGCTGATACTGGGCCTATTCCTAAAATCACCTTAGGTGTGTCATTTCTTCATCAATTTCATCATTTTG AGGAACAAAAAAGGAAAATTAAATGACCCTTTTGTTTGAAATTTGGTTTCAGATCATGTTACTGTGAGCTTTGCCAGAAG CGGAGGACCTGGGGGTCAGAATGTGAATAAAGGTTGGTTTTAATTTTTTTTTAACTTGTTTTTGTGGAAATCAAAGGTTA TTCTTTTTATTTGTTTCTATTTTAGATGCTGGCTGGGGCTAACTAGTATAATACTGTTTGTATTGTTATGCCTGTTGTTG GACAGTGAATACCAAGGTGGACATGCGCTTCAATGTTAAAAATGCATATTGGCTTAGTGAGAGGATCAGGGACAAGATTA TTCAAACGGTTAGTTCGTCGCAACTTTTCTTTTCTCGTCCTTATAAAATCATATGATTTACTGCTTATTTGTTAGATGTG AAAGTGAAACCATTTATGTATACTGTCACCTAATTGCTTAGCTTTTTGAAATAGTTGGTTCATGACATGATATTAAAAGC TATGTAGTTAAGTGGTTTAGAATTTGATCCTATTCTTTTAAGTAGAAGTTAAATTTCAGTACAGTGTTTGGTGAACTTGG GCATAGTCCACGCTTCAAACCCGATTGACTATTGCTTGAGGGGCTGTCAGATGCAAAATTATCCATGTACTTAAACCTAA CAATTTAAGTTTGTTTTTGGGACAATTGGTTTATTCAACTGTCTCTATAGGCCCTTGTATGGTTGGCATTATTTATGTGA AGCCACATCTTATTGCTATATGCTCATTATTCACCGATATCTACCTTATCTTTTAATATTCTTGAATTCCTGAGCAGGAG AAAAACCGTATCAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACACAGAAGTTTGCCTCTTCGCTTCT GTCGTATTTGTTGTCTGTTTTCCTGTATGTTGTAAGATTGATCCTTATTCTACCAGTTTTTCTTCAGGGGTAATATCGAT GATGCTTTGGCAAAGCTTCAGGTATATAAAATTTCTTTCTTTTGTTAACTTGTTTAAAAGTATGCTTTAGCATCAGATGT TATTATTGAAGAACATATCTCCTCAAATCTAAAATTCTTCAGTGGAAGCCCAAAAATGGTTTTTTATGACGGTTATCATT ACTTGGTAGATTCTGAAATGATTATGTTTCTATAGCTCTCAAGTCTTCTCCCACCAGGGACTTAATTCTATAAATAATAA TGATGTATTAGCTTCTTGAAATGGAATTTTCCAGTGTGCAAGACAGTTTCTGTGGACTCATATCAGCTATATAAGTCTGG ATTTTACTTTTTGTAGCTCTGGATTCTATTACTTCCTATTCTTCTCTGGTGTTAATGGGGTTTGTAGAAGTTTGTTTGTT GAAAATGCTGTGTTTGTAAATACTCCCTTATCTTGATAGTAAAGAAACTAGGGGAAGAATGGAGCTTAGGATATTGACTT GGTGGTAGACATATCCTACTCCTTATTTTCTGGGTTCTTGTGTATTAGATGAAGGTAAGTCAAGTTCTAACGCTGACTAT CTTTTTGATTGTCTGAGGAGTTATAATAACATACTGAATAAGTAAGAAATGGAATATTTCTTGGAGAAGTACTTTGTAAA TTGGCTCCTTGTTTGTTACTGTTCATTGGCTGTCTATTCCTTTATTGTTGAGTTGCTTGATTGCCATGTCTTTGTTATAG CGGAGTCCATAGTGTACTTGTCTTGACCCTGCAAATATTAGTGAGAACAAAAATGAGGTGTGGTGTATACAAAATATAAT ATGAGTATATCTTATAAGCATTCCGATTATTTCCTTAAAAATATGATTATTCAGCACCCCTCCTGGTTAGTGTCATCTTG GATACGATGTTCTTGTTCCTGAAAAATGACTTTTACTCGACAATGTTGCTTTTCTGTTTATTTAATGGGAAAAATAGGAA ATCATTGATGCTGCATCTTATGTCCCACCTCCTCCATCAGAAGAACAAAAGAAGAAAATTGCCAAGATGTAAGAGCACTT CTCTTTTTATTTTTTAATTTCTTCAGGTTAAAAATGCAATCTCATTTTGGACACCATTTTGCTTGTGGCTTTTATTACAT TGAGTCACTTGAGTGTGAAGGGCATGTAACATTGAAACTGACAACTGTTAATTGAATGTGTACTTTTGAAGGGCTGCCAT AGGAGAGCAGAAACGCCTTAAAAGCAAGAAGGTGCTTTCAGATAAGAAAGCGTTTAGAAGAAGTAAAAGTAGTTGGGACT AATACATTGTATTCCAGAATCTTGAAACAGTTTATCCCTTTAGTAAGTTCACCATTATTGGCAACTTGAGTTTTTTTTTA TTAAACCGGCTATTATCAGTTTTATTGTGCCTATTCTCAATTGATGTTGCTCCTGAATCTTGGGGTTGCAGGGCACAAAT GCACAATCCTCTGATACTGCCACTATTCAGTACAAACACATTAGATGAATGATTGAAAATAACCAAGAGTTTGAGCAACA TAACGCAACATTCTGCCAGCCTACTAGAAGGATCTCATGCAACTTGTGGCTGCACATATATTGGTAGTTAGTCAAAATTG TGATGCAGCTATGATTTCATGCAACAGGATTATTGATATAAAAAGAAATACCATATTTGAGTTGAATCTGTTATGTTTAA TTTGTTATCTTAAGCTCTCCCATGTGATTTGGCAATTATGGGTCTTCTGCATTATTGAAGGTCAGCAACCTGGGGACCAT GCTTCAAGTCAGAAGTATGTTTGATACACAATTCGGTTGCTGGGACGGAATTTTGTCATTTTGGTAGTTGGGAAGTCTGT TCCCTATACGTTTCCATGTTAGAACAAGGCCATCTATGCACCCCAATTTGTTAAAGATTTTAAAATCAGTACTCATTACT CTCCATTGCTTATTACTTTGGACTAATTCTGAGTGATACTGTAAACTAACTTTCACTATCTGGTAACTAGCTCAATATGA TATTTATTGTTCTGTTTAAAGGTTGGGGCTAAGCCCCCAAAAAACAAGGCTAAAATGCAGAAACAACAGACACCGAGGTC ATGCCTTCGCTAACATCTTGCCTAAGAACATGATGATACTCACCAAAAGGGGATGTAAAACAATGGACCCAAAACGAAAA GCTAAGGAAGCACTGGCAAGCCAGTTCGCAACAAGTTACTCTCCCCGAAAGTAACGCCAAAACAATACCTCTATGCGTTG AGATTCTACACTGAATGTGCTCAATCATGTCAGCAAAAGAGTGAGACGGATCATCTTCAAAGGAAACTAAACGAATGGCT TCCAAAAGTTGCTCCCAATAACAGCTCGAGAGATATCCATCGTCAAAACATATGCTAGATCATGCCTCGTGTTGAAATTG TGTTTATATTATATATCTCCTTATATGTTTAACTAGGGAATTCTTTGAATATCTATGAATAAAGAGATATATGCAATATA TCACATGACTCTGTCATGTGATATGAGAATATTCTACTCCGATATTAGCCTGTCCACTTCCCCCTCTTCCTATTTGCCTT TCAGCTTCCCAAAATCCCAGCTGGCAAGTGGCAAGTAATCTTCTTATGACAAAACAAAAGAAAGAAAGAAATTCTGTCCC AGACGCAAAAGTCATCACAGATGGAAATAAAAAAGGACTACCAGAGTCTCATAACAGTAAAGAATAAATGGAATGGTTTG TGAGATACCACATACACACTGCATCATTGTATTTAATTACAACTAATCAGTGTATTTTGGCAAAACATGTTACAAAAATG AAGAAGTTAAATAAAATCTGTTACAATCTTTGCAGCTAATAGAATACCAGCAAAGAAAGAAGAAGAAAAAAAAACAACTG CTTGCATCAAACATGTTCATTCATCGCCGAATCACATGCACATCCCCTGATTGTCGATCAACATGCTTGATCCATCTCTT ACCCTTGATCCCAGAAACAGAATCACCACCTCCAACAGCAGAAACATGTGCTATGTCAAGCCCTTTCCCCACCGGAAGAA ACACAGAATGAACAAGCCGCCGCCGCGAAGAACCTCCATCAACCACGCTCCGCCATTTAAACCCTGTAACATTTCTAGAA TTCGCATTCTTACAAACCAACACAGCCCCCATGCTGCTAAGCTTAGCCACCCTCAGAATCTTGGAAAACTCCCTCCCTTT ACAATCCACCACCATGAAATCAATCCCAACCAAACCTTCCATCACCTCCTCCGCTTCCCCCACCATCACCTCCGTGCACA CCCCTGCCTCCCCCATCCTGTCACAATATTCCACCTTTGATCTCTCGTCAGGGACCACGCAGACGTGCCTCCCGCTCGTG TGCCCTCTTGCTATCCCCAACCCTCTGCTCGTGGCGATCGGTCCTCCCTCTGACCATGTCTCCACGATGAGCTGCGCTTT CCACCCTGCCGCCATGGCGGAAACAAGCTCTGCCACCCCTGATTCAGGGCACTGGTCAACAAAATGAATTGAACAAGGTT AGAGAGAGACATGGATGGAAAATGGAAAGAATGATATGAACATGACAAACAAGGTGTGATGATTTTTGAATGCTTACAGA TTGGACTGTGTCGATGTATGCTTTTGATGCTGCCTCCGGGGACCAAACTAGCTTCATTTTCCTCTTCCTCGGATGATTGA TATTTGATGATGATGATGGTTTTGGTTTTGGGGTATGTATGGAAATTGAGGTGTGATATTTAGTGTGATTGTGAATGTTT GAGATTGAATCACGAGGGTTTAATATTGATTATATAGGAGCATGAGAACGCGGAAGAGAGAAGAACAAGGATGACTAGGA GCTGAGGAGGTTCTAGAGAGAGAGATAGAAGCAGAGCATGTAGGACCGTTGACATTTATTCCTTAGCCGCGGCATTCCAA CGTGTTGGTAGCTTCGGATAACTCCGGTTTCTCTTGAATAGTGATTGTGATCTTGTCTGTATGTAAAGGTTAACTATGCT GTCACGCTAAACTGATTTTCTCTTCTCTATCATACTTGTCAATGTCATATATTGTTGTTACTTGTTTTCGTATTAATAGG AGGACAAATGGTAAAAAAACAAGTAAGGGAAATTGTAGAATCAAACTTTACAAATTTTACAAAGTAAAAAAACAGTTCAT TTTATTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0213800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATGCTATGGCTTCAGCCACCAGTAGAATGGTGCTGAATGAAATGTTGCACCTCTCTTTCACACTTCCATTTTCTTC GCTTCGTGTCGGTTCTGTGCTTTCTCGTGCTCTCCCCTTCTCTCCATACAGGAATACATCACTTCTTCAATCACGCCACT CTCGCTTCCCTGCAATTCGATGCGCTTCTTCAAATTCGGATTCTGGCAACAAAGTGTCGTCTCGGTTATCGCAGGTTCAG CATCTCCTCCATGAAGCTGAACAACGAGCTCTCTCTGCTGATACTGGGCCTATTCCTAAAATCACCTTAGATCATGTTAC TGTGAGCTTTGCCAGAAGCGGAGGACCTGGGGGTCAGAATGTGAATAAAGTGAATACCAAGGTGGACATGCGCTTCAATG TTAAAAATGCATATTGGCTTAGTGAGAGGATCAGGGACAAGATTATTCAAACGGAGAAAAACCGTATCAACAAGGATGGG GAGCTTGTGATTTCTTCAACCAAAACTAGAACACAGAAGGGTAATATCGATGATGCTTTGGCAAAGCTTCAGGAAATCAT TGATGCTGCATCTTATGTCCCACCTCCTCCATCAGAAGAACAAAAGAAGAAAATTGCCAAGATGGCTGCCATAGGAGAGC AGAAACGCCTTAAAAGCAAGAAGGTGCTTTCAGATAAGAAAGCGTTTAGAAGAAGTAAAAGTAGTTGGGACTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0213800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNAMASATSRMVLNEMLHLSFTLPFSSLRVGSVLSRALPFSPYRNTSLLQSRHSRFPAIRCASSNSDSGNKVSSRLSQVQ HLLHEAEQRALSADTGPIPKITLDHVTVSFARSGGPGGQNVNKVNTKVDMRFNVKNAYWLSERIRDKIIQTEKNRINKDG ELVISSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKMAAIGEQKRLKSKKVLSDKKAFRRSKSSWD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 16 16 - –
Phobius
SIGNAL_PEPTIDE
1 37 37 - –
PANTHER
PTHR47352
3 237 235 3.2E-101 –
Phobius
SIGNAL_PEPTIDE_H_REGION
17 28 12 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
29 37 9 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
38 237 200 - –
Gene3D
G3DSA:3.30.160.20
98 236 139 8.6E-41 –
SUPERFAMILY
SSF110916
100 191 92 1.07E-25 –
Pfam
PF00472
101 227 127 2.0E-18
IPR000352
ProSitePatterns
PS00745
112 128 17 -
IPR000352

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003747
Molecular function Translation release factor activity Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
Subterm of
GO:0006415
Biological process Translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0213800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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