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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0220700 |
| Transcript ID | LotjaGi4g1v0220700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Scarecrow transcription factor family protein; TAIR: AT1G63100.2 GRAS family transcription factor; Swiss-Prot: sp|Q9CAN3|SCL28_ARATH Scarecrow-like protein 28; TrEMBL-Plants: tr|A0A072URL3|A0A072URL3_MEDTR GRAS family transcription factor; Found in the gene: LotjaGi4g1v0220700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:51888597..51892034) extracted from Lotus japonicus Gifu genome v1.2.
ACACGGTGCACAAGTGTTCCCTTTCACCATGCTGTCATCATCATATTCCACACTTTGCTGGTAAAAATCAAACCACTCGT AGGACCAGATAAAGCACCATGATGATGGAGACAGCCCCACATTGCTGAAGAAGAAGGAGGAGGAGAAGAACTGAAGAAGA AGTAGCAGCATACATACAACTACATCACACAGCAACTATGGTGGTGGTGGAATTTATACACCATAGTAGTAGTTGTATTG TATAAAAGGAAAGCACCGTTGTTTACACCGAGTTTCTTTTGGGTAAGTGAGTTCTCAAAAGGGGTTGCTGTTGATGCAAA TTCAGAGAGAGGTGGGGTTTCTTCTGGGTTGTTGTTGAAATGAAGGAATTGTTCTTCTTCCACATTTCTTCCACTGCTAA TATTATGGGTTTCAATATTTCTCAGGAGGATATCTTCTGCCACAAATTCCAAGGTGCATGTTTCTGTTTCTCACATCCCT TCTTGATCTTCTTCATAAACTAGGACAAACCCAAATGCCACTTCTTTGAATGTTTCTGGAATCCGATGATCTTTTATTGT TTTGATTTTTAGTATCATAAATTCTTTCATTCTTTCCTGCATATACACATAACTTCAATTCTTTTGTTATTATATAACAA TCAGCATTCTTCACATTCACAGTCACAGTCACAGATTCAATTCACATAGGAAACATTCAATTTGTAAAAAAAAAAAAACT GCACATTGGATTGGATATTCATCGGATTCCTTTTTTTCTTTGTTTGAAAAGAATTCCTTAGAATTTTCACACACACATTT TCACAACACAACACATTACATGCGCATGCAAATTGAGTTTTCCATTAAGAAAAATTCCATTCATTTCTTCTTCACCCACA CTTGATCAAGCTATTATATAGAGAAAGGGAAGGGAAAAAGAAGCAGAAACAAACAGAAGCAGCAGCAATTGGGTTGAGTG AGAGAACAAGCGTTACTGCAACCATAGACAATGTTGGCTGGGTGTTCTAGTCCGGCATTGTCATCACCGAGGCACAGATT GAGGAGTGAAGCATCAGCACAGTTTCAAGCTTGCCATTTCCAGTTACCTTCCATGAGCACACAGAGATTGGACTTGCCAC GCAGCGCTTTCCCTCGGAAAGACACAACAACGACCTCTTCACGCTCGCAGCCATTGAGGCCTGTGGGGATTTCAGTGGAG AAAACCAATGAATCCAAGAGCAGCACTTGTTCTCTGAAGCAGAACATTCGTCTTCCACCTCTGGCTACAACAACAGCGTC ACTAGGAGGAGATATCATCAAGGGTGAGGAGTTTTGGGAGAAGAAGAGTACCAAGAGTTTGAAGAGAGTTGCAGAGCATG GAGATGATGATGATGATGATGAGTCCTTCACCAGCAGATACAAGAGGAAAAAGGGTAATGGGAATTCTGATGAGGTTCTT GAAGCAGGGGAAAATTTTGGAAGCTTTTGGTCTGTTCATAGTTTTGGAGGCCTTAACCTTCCTTCTTCACTTCCTTTCTC TCTGAATTGTTCTGGGGATGAAGAGAGGGTGTGTTTTGCTCCTGCTGAAGTGATTTCTGCACCTTTGCCTTTCTCAAACA ACAATCCTTGGCTGGAATCTGCTGTAACAACAATCACCAATTTTGGTGAGGGAAGCCACCAACACCAGCAGCATGTTAAG GAAGGTTCAGTCTCCAATGATTCATCAGATAGCCAGAGCTTGAGCCTGAGGTTGAATGAGAATGTTACATCAGAACTTGA AGTGGGAAATGGTTCAGGGAATCCTCATCACCATGAAGTGGAGACAGGGGAAGAGGATGAACAAGAGGAGCATCGTGGGT TTGAGCTTGTAAGCTTTCTCACTGGTTGTGTTGATGCCATTTCTTCAAGGAATGTGACTGCTATCAACCATTTCATTGCA AAATTGGGTGAACTTGCATCTCCAAGAGGAAGAACCTCCATAAGCCGCATTTGTGCTTATTTCACTGAAGCCTTAGCCAT CAGAATCACCAGGCTCTGGCCTCATGTTTTTCATGTCACCACTATCCCTCGGGTTTTGGATGATGATGAAACCGTCACTG CACTGAGGCTTCTCAACCAGATCACCCCAGTTCCCAAGTTTCTCCATTTCACATCAAATGAGATGCTGCTGAGGGCTTTT GAAGGGAAAGACAGGGTTCACATCATAGATTTTGACATTAAGCAAGGTCTTCAATGGCCTAGCTTGTTCCAAAGCTTAGC CTCCAGAACTCATCCTCCAAGCCATGTTAGAATCACTGGTGTGGGGGAATCTAAGCAAGAGCTGAATGAAACTGGAGACA GACTTGCAGGTTTTGCTGAGGCACTGAACCTTCCCTTTGAGTTTCACCCAGTTGTGGATAGGCTTGAAGATGTTAGGCTA TGGATGCTTCATGTGAAGGAGCATGAGAGTGTGGCTGTGAATTGCTTTTTGCAGCTCCACAAGACTCTCTATGATGGTAG TGGAGGAGCATTGAGGGATTTCTTAGGCCTAATTCGCAGCACGAATCCTACTATTGTTGTCATGGCAGAGCAGGAAGCAG AACACAATGAAGCAAGGTTGGAAACAAGGGTGTGCAATTCCTTGAAATACTACTCAGCTCTGTTTGATTCCATTGACCAC ATTGGCCTTCAAGAACAAAGCCCTGTGAGGATCAAGATAGAGGAGATGTATGCAAGGGAGATAAGGAACATCATTGCTTG TGAAGGGAGGGAGAGAGCGGAGAGGCACGAGAGTTTCGCGAAATGGAGGAAGTTGATGGTGGAGCAAGGAGGGTTCAGAT GCATGGGAGTTACTGAGAGGGAATTGGTTCAGAGCCGGTTTCTGTTGAAGATGTATTCCTGTGAGAATTACAGTGTGATG AAGCAGGAGGAGGATGGTGGAGAAGGACTCACTTTGGGTTGGCTTGATCAGCCTCTCTACACGGTCTCGGCATGGACACC GGTTGATGCAGCAGGAAGTTCATCATCATTTTCTCAGCCAGCTTGATTCAGCAACAGATTTTCTTTTCATCATACAGAGA CAGATATACAGAGAAAAAGGGTAGAGTATTATTCTTTGTAGGTAGGAAAATTGTCATGACTATTCGTTCATTCTTTGTTG CAGATAAGATTTATTAGTTTCAAAGAAGTAGCTGGTGCAATTGTTTATCAGTACAGCAATACTGTTTTCTGTTCTTTATT CATATAGTCCAGATTTCTTGATACGTTTGTAGTCAACTTATGTTCATTGTTTCATTCTTTATGTAAGCTGAAATTCTTTT GTCAAGTCCTTGTAATTGGATAAGTTGCTATTACTACTATTCTATTGAATGTGAAAAGTGAAATGAAATTCAGTATACAT TTGGAGTCAATTTCTGCAATTCCTTCTTTCTTGTTGTAGTTTCATATGTTTCTCAATTTGATATAATCTGAATCTATC
CDS sequence (LotjaGi4g1v0220700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCTGGGTGTTCTAGTCCGGCATTGTCATCACCGAGGCACAGATTGAGGAGTGAAGCATCAGCACAGTTTCAAGC TTGCCATTTCCAGTTACCTTCCATGAGCACACAGAGATTGGACTTGCCACGCAGCGCTTTCCCTCGGAAAGACACAACAA CGACCTCTTCACGCTCGCAGCCATTGAGGCCTGTGGGGATTTCAGTGGAGAAAACCAATGAATCCAAGAGCAGCACTTGT TCTCTGAAGCAGAACATTCGTCTTCCACCTCTGGCTACAACAACAGCGTCACTAGGAGGAGATATCATCAAGGGTGAGGA GTTTTGGGAGAAGAAGAGTACCAAGAGTTTGAAGAGAGTTGCAGAGCATGGAGATGATGATGATGATGATGAGTCCTTCA CCAGCAGATACAAGAGGAAAAAGGGTAATGGGAATTCTGATGAGGTTCTTGAAGCAGGGGAAAATTTTGGAAGCTTTTGG TCTGTTCATAGTTTTGGAGGCCTTAACCTTCCTTCTTCACTTCCTTTCTCTCTGAATTGTTCTGGGGATGAAGAGAGGGT GTGTTTTGCTCCTGCTGAAGTGATTTCTGCACCTTTGCCTTTCTCAAACAACAATCCTTGGCTGGAATCTGCTGTAACAA CAATCACCAATTTTGGTGAGGGAAGCCACCAACACCAGCAGCATGTTAAGGAAGGTTCAGTCTCCAATGATTCATCAGAT AGCCAGAGCTTGAGCCTGAGGTTGAATGAGAATGTTACATCAGAACTTGAAGTGGGAAATGGTTCAGGGAATCCTCATCA CCATGAAGTGGAGACAGGGGAAGAGGATGAACAAGAGGAGCATCGTGGGTTTGAGCTTGTAAGCTTTCTCACTGGTTGTG TTGATGCCATTTCTTCAAGGAATGTGACTGCTATCAACCATTTCATTGCAAAATTGGGTGAACTTGCATCTCCAAGAGGA AGAACCTCCATAAGCCGCATTTGTGCTTATTTCACTGAAGCCTTAGCCATCAGAATCACCAGGCTCTGGCCTCATGTTTT TCATGTCACCACTATCCCTCGGGTTTTGGATGATGATGAAACCGTCACTGCACTGAGGCTTCTCAACCAGATCACCCCAG TTCCCAAGTTTCTCCATTTCACATCAAATGAGATGCTGCTGAGGGCTTTTGAAGGGAAAGACAGGGTTCACATCATAGAT TTTGACATTAAGCAAGGTCTTCAATGGCCTAGCTTGTTCCAAAGCTTAGCCTCCAGAACTCATCCTCCAAGCCATGTTAG AATCACTGGTGTGGGGGAATCTAAGCAAGAGCTGAATGAAACTGGAGACAGACTTGCAGGTTTTGCTGAGGCACTGAACC TTCCCTTTGAGTTTCACCCAGTTGTGGATAGGCTTGAAGATGTTAGGCTATGGATGCTTCATGTGAAGGAGCATGAGAGT GTGGCTGTGAATTGCTTTTTGCAGCTCCACAAGACTCTCTATGATGGTAGTGGAGGAGCATTGAGGGATTTCTTAGGCCT AATTCGCAGCACGAATCCTACTATTGTTGTCATGGCAGAGCAGGAAGCAGAACACAATGAAGCAAGGTTGGAAACAAGGG TGTGCAATTCCTTGAAATACTACTCAGCTCTGTTTGATTCCATTGACCACATTGGCCTTCAAGAACAAAGCCCTGTGAGG ATCAAGATAGAGGAGATGTATGCAAGGGAGATAAGGAACATCATTGCTTGTGAAGGGAGGGAGAGAGCGGAGAGGCACGA GAGTTTCGCGAAATGGAGGAAGTTGATGGTGGAGCAAGGAGGGTTCAGATGCATGGGAGTTACTGAGAGGGAATTGGTTC AGAGCCGGTTTCTGTTGAAGATGTATTCCTGTGAGAATTACAGTGTGATGAAGCAGGAGGAGGATGGTGGAGAAGGACTC ACTTTGGGTTGGCTTGATCAGCCTCTCTACACGGTCTCGGCATGGACACCGGTTGATGCAGCAGGAAGTTCATCATCATT TTCTCAGCCAGCTTGA
Protein sequence (LotjaGi4g1v0220700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAGCSSPALSSPRHRLRSEASAQFQACHFQLPSMSTQRLDLPRSAFPRKDTTTTSSRSQPLRPVGISVEKTNESKSSTC SLKQNIRLPPLATTTASLGGDIIKGEEFWEKKSTKSLKRVAEHGDDDDDDESFTSRYKRKKGNGNSDEVLEAGENFGSFW SVHSFGGLNLPSSLPFSLNCSGDEERVCFAPAEVISAPLPFSNNNPWLESAVTTITNFGEGSHQHQQHVKEGSVSNDSSD SQSLSLRLNENVTSELEVGNGSGNPHHHEVETGEEDEQEEHRGFELVSFLTGCVDAISSRNVTAINHFIAKLGELASPRG RTSISRICAYFTEALAIRITRLWPHVFHVTTIPRVLDDDETVTALRLLNQITPVPKFLHFTSNEMLLRAFEGKDRVHIID FDIKQGLQWPSLFQSLASRTHPPSHVRITGVGESKQELNETGDRLAGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEHES VAVNCFLQLHKTLYDGSGGALRDFLGLIRSTNPTIVVMAEQEAEHNEARLETRVCNSLKYYSALFDSIDHIGLQEQSPVR IKIEEMYAREIRNIIACEGRERAERHESFAKWRKLMVEQGGFRCMGVTERELVQSRFLLKMYSCENYSVMKQEEDGGEGL TLGWLDQPLYTVSAWTPVDAAGSSSSFSQPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 39 | 66 | 28 | - | – | |
| MobiDBLite | 48 | 63 | 16 | - | – | |
| MobiDBLite | 119 | 147 | 29 | - | – | |
| PANTHER | 169 | 660 | 492 | 1.6E-216 | – | |
| PANTHER | 169 | 660 | 492 | 1.6E-216 | ||
| MobiDBLite | 220 | 281 | 62 | - | – | |
| MobiDBLite | 220 | 260 | 41 | - | – | |
| MobiDBLite | 262 | 281 | 20 | - | – | |
| ProSiteProfiles | 277 | 656 | 380 | 87.94 | ||
| Pfam | 287 | 656 | 370 | 6.9E-123 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0220700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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