Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0220700 |
Transcript ID | LotjaGi4g1v0220700.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Scarecrow transcription factor family protein; TAIR: AT1G63100.2 GRAS family transcription factor; Swiss-Prot: sp|Q9CAN3|SCL28_ARATH Scarecrow-like protein 28; TrEMBL-Plants: tr|A0A072URL3|A0A072URL3_MEDTR GRAS family transcription factor; Found in the gene: LotjaGi4g1v0220700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:51888659..51892119) extracted from Lotus japonicus Gifu genome v1.2.
CCCCATTCTCCAACGGTCATTTTTCACCGACATCCACCAACGGTCATATAATAATACCTCCTTTCCGTGCCGTTTGATCT CTATCACACGGTGCACAAGTGTTCCCTTTCACCATGCTGTCATCATCATATTCCACACTTTGCTGGTAAAAATCAAACCA CTCGTAGGACCAGATAAAGCACCATGATGATGGAGACAGCCCCACATTGCTGAAGAAGAAGGAGGAGGAGAAGAACTGAA GAAGAAGTAGCAGCATACATACAACTACATCACACAGCAACTATGGTGGTGGTGGAATTTATACACCATAGTAGTAGTTG TATTGTATAAAAGGAAAGCACCGTTGTTTACACCGAGTTTCTTTTGGGTAAGTGAGTTCTCAAAAGGGGTTGCTGTTGAT GCAAATTCAGAGAGAGGTGGGGTTTCTTCTGGGTTGTTGTTGAAATGAAGGAATTGTTCTTCTTCCACATTTCTTCCACT GCTAATATTATGGGTTTCAATATTTCTCAGGAGGATATCTTCTGCCACAAATTCCAAGGTGCATGTTTCTGTTTCTCACA TCCCTTCTTGATCTTCTTCATAAACTAGGACAAACCCAAATGCCACTTCTTTGAATGTTTCTGGAATCCGATGATCTTTT ATTGTTTTGATTTTTAGTATCATAAATTCTTTCATTCTTTCCTGCATATACACATAACTTCAATTCTTTTGTTATTATAT AACAATCAGCATTCTTCACATTCACAGTCACAGTCACAGATTCAATTCACATAGGAAACATTCAATTTGTAAAAAAAAAA AAACTGCACATTGGATTGGATATTCATCGGATTCCTTTTTTTCTTTGTTTGAAAAGAATTCCTTAGAATTTTCACACACA CATTTTCACAACACAACACATTACATGCGCATGCAAATTGAGTTTTCCATTAAGAAAAATTCCATTCATTTCTTCTTCAC CCACACTTGATCAAGCTATTATATAGAGAAAGGGAAGGGAAAAAGAAGCAGAAACAAACAGAAGCAGCAGCAATTGGGTT GAGTGAGAGAACAAGCGTTACTGCAACCATAGACAATGTTGGCTGGGTGTTCTAGTCCGGCATTGTCATCACCGAGGCAC AGATTGAGGAGTGAAGCATCAGCACAGTTTCAAGCTTGCCATTTCCAGTTACCTTCCATGAGCACACAGAGATTGGACTT GCCACGCAGCGCTTTCCCTCGGAAAGACACAACAACGACCTCTTCACGCTCGCAGCCATTGAGGCCTGTGGGGATTTCAG TGGAGAAAACCAATGAATCCAAGAGCAGCACTTGTTCTCTGAAGCAGAACATTCGTCTTCCACCTCTGGCTACAACAACA GCGTCACTAGGAGGAGATATCATCAAGGGTGAGGAGTTTTGGGAGAAGAAGAGTACCAAGAGTTTGAAGAGAGTTGCAGA GCATGGAGATGATGATGATGATGATGAGTCCTTCACCAGCAGATACAAGAGGAAAAAGGGTAATGGGAATTCTGATGAGG TTCTTGAAGCAGGGGAAAATTTTGGAAGCTTTTGGTCTGTTCATAGTTTTGGAGGCCTTAACCTTCCTTCTTCACTTCCT TTCTCTCTGAATTGTTCTGGGGATGAAGAGAGGGTGTGTTTTGCTCCTGCTGAAGTGATTTCTGCACCTTTGCCTTTCTC AAACAACAATCCTTGGCTGGAATCTGCTGTAACAACAATCACCAATTTTGGTGAGGGAAGCCACCAACACCAGCAGCATG TTAAGGAAGGTTCAGTCTCCAATGATTCATCAGATAGCCAGAGCTTGAGCCTGAGGTTGAATGAGAATGTTACATCAGAA CTTGAAGTGGGAAATGGTTCAGGGAATCCTCATCACCATGAAGTGGAGACAGGGGAAGAGGATGAACAAGAGGAGCATCG TGGGTTTGAGCTTGTAAGCTTTCTCACTGGTTGTGTTGATGCCATTTCTTCAAGGAATGTGACTGCTATCAACCATTTCA TTGCAAAATTGGGTGAACTTGCATCTCCAAGAGGAAGAACCTCCATAAGCCGCATTTGTGCTTATTTCACTGAAGCCTTA GCCATCAGAATCACCAGGCTCTGGCCTCATGTTTTTCATGTCACCACTATCCCTCGGGTTTTGGATGATGATGAAACCGT CACTGCACTGAGGCTTCTCAACCAGATCACCCCAGTTCCCAAGTTTCTCCATTTCACATCAAATGAGATGCTGCTGAGGG CTTTTGAAGGGAAAGACAGGGTTCACATCATAGATTTTGACATTAAGCAAGGTCTTCAATGGCCTAGCTTGTTCCAAAGC TTAGCCTCCAGAACTCATCCTCCAAGCCATGTTAGAATCACTGGTGTGGGGGAATCTAAGCAAGAGCTGAATGAAACTGG AGACAGACTTGCAGGTTTTGCTGAGGCACTGAACCTTCCCTTTGAGTTTCACCCAGTTGTGGATAGGCTTGAAGATGTTA GGCTATGGATGCTTCATGTGAAGGAGCATGAGAGTGTGGCTGTGAATTGCTTTTTGCAGCTCCACAAGACTCTCTATGAT GGTAGTGGAGGAGCATTGAGGGATTTCTTAGGCCTAATTCGCAGCACGAATCCTACTATTGTTGTCATGGCAGAGCAGGA AGCAGAACACAATGAAGCAAGGTTGGAAACAAGGGTGTGCAATTCCTTGAAATACTACTCAGCTCTGTTTGATTCCATTG ACCACATTGGCCTTCAAGAACAAAGCCCTGTGAGGATCAAGATAGAGGAGATGTATGCAAGGGAGATAAGGAACATCATT GCTTGTGAAGGGAGGGAGAGAGCGGAGAGGCACGAGAGTTTCGCGAAATGGAGGAAGTTGATGGTGGAGCAAGGAGGGTT CAGATGCATGGGAGTTACTGAGAGGGAATTGGTTCAGAGCCGGTTTCTGTTGAAGATGTATTCCTGTGAGAATTACAGTG TGATGAAGCAGGAGGAGGATGGTGGAGAAGGACTCACTTTGGGTTGGCTTGATCAGCCTCTCTACACGGTCTCGGCATGG ACACCGGTTGATGCAGCAGGAAGTTCATCATCATTTTCTCAGCCAGCTTGATTCAGCAACAGATTTTCTTTTCATCATAC AGAGACAGATATACAGAGAAAAAGGGTAGAGTATTATTCTTTGTAGGTAGGAAAATTGTCATGACTATTCGTTCATTCTT TGTTGCAGATAAGATTTATTAGTTTCAAAGAAGTAGCTGGTGCAATTGTTTATCAGTACAGCAATACTGTTTTCTGTTCT TTATTCATATAGTCCAGATTTCTTGATACGTTTGTAGTCAACTTATGTTCATTGTTTCATTCTTTATGTAAGCTGAAATT CTTTTGTCAAGTCCTTGTAATTGGATAAGTTGCTATTACTACTATTCTATTGAATGTGAAAAGTGAAATGAAATTCAGTA TACATTTGGAGTCAATTTCTG
CDS sequence (LotjaGi4g1v0220700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCTGGGTGTTCTAGTCCGGCATTGTCATCACCGAGGCACAGATTGAGGAGTGAAGCATCAGCACAGTTTCAAGC TTGCCATTTCCAGTTACCTTCCATGAGCACACAGAGATTGGACTTGCCACGCAGCGCTTTCCCTCGGAAAGACACAACAA CGACCTCTTCACGCTCGCAGCCATTGAGGCCTGTGGGGATTTCAGTGGAGAAAACCAATGAATCCAAGAGCAGCACTTGT TCTCTGAAGCAGAACATTCGTCTTCCACCTCTGGCTACAACAACAGCGTCACTAGGAGGAGATATCATCAAGGGTGAGGA GTTTTGGGAGAAGAAGAGTACCAAGAGTTTGAAGAGAGTTGCAGAGCATGGAGATGATGATGATGATGATGAGTCCTTCA CCAGCAGATACAAGAGGAAAAAGGGTAATGGGAATTCTGATGAGGTTCTTGAAGCAGGGGAAAATTTTGGAAGCTTTTGG TCTGTTCATAGTTTTGGAGGCCTTAACCTTCCTTCTTCACTTCCTTTCTCTCTGAATTGTTCTGGGGATGAAGAGAGGGT GTGTTTTGCTCCTGCTGAAGTGATTTCTGCACCTTTGCCTTTCTCAAACAACAATCCTTGGCTGGAATCTGCTGTAACAA CAATCACCAATTTTGGTGAGGGAAGCCACCAACACCAGCAGCATGTTAAGGAAGGTTCAGTCTCCAATGATTCATCAGAT AGCCAGAGCTTGAGCCTGAGGTTGAATGAGAATGTTACATCAGAACTTGAAGTGGGAAATGGTTCAGGGAATCCTCATCA CCATGAAGTGGAGACAGGGGAAGAGGATGAACAAGAGGAGCATCGTGGGTTTGAGCTTGTAAGCTTTCTCACTGGTTGTG TTGATGCCATTTCTTCAAGGAATGTGACTGCTATCAACCATTTCATTGCAAAATTGGGTGAACTTGCATCTCCAAGAGGA AGAACCTCCATAAGCCGCATTTGTGCTTATTTCACTGAAGCCTTAGCCATCAGAATCACCAGGCTCTGGCCTCATGTTTT TCATGTCACCACTATCCCTCGGGTTTTGGATGATGATGAAACCGTCACTGCACTGAGGCTTCTCAACCAGATCACCCCAG TTCCCAAGTTTCTCCATTTCACATCAAATGAGATGCTGCTGAGGGCTTTTGAAGGGAAAGACAGGGTTCACATCATAGAT TTTGACATTAAGCAAGGTCTTCAATGGCCTAGCTTGTTCCAAAGCTTAGCCTCCAGAACTCATCCTCCAAGCCATGTTAG AATCACTGGTGTGGGGGAATCTAAGCAAGAGCTGAATGAAACTGGAGACAGACTTGCAGGTTTTGCTGAGGCACTGAACC TTCCCTTTGAGTTTCACCCAGTTGTGGATAGGCTTGAAGATGTTAGGCTATGGATGCTTCATGTGAAGGAGCATGAGAGT GTGGCTGTGAATTGCTTTTTGCAGCTCCACAAGACTCTCTATGATGGTAGTGGAGGAGCATTGAGGGATTTCTTAGGCCT AATTCGCAGCACGAATCCTACTATTGTTGTCATGGCAGAGCAGGAAGCAGAACACAATGAAGCAAGGTTGGAAACAAGGG TGTGCAATTCCTTGAAATACTACTCAGCTCTGTTTGATTCCATTGACCACATTGGCCTTCAAGAACAAAGCCCTGTGAGG ATCAAGATAGAGGAGATGTATGCAAGGGAGATAAGGAACATCATTGCTTGTGAAGGGAGGGAGAGAGCGGAGAGGCACGA GAGTTTCGCGAAATGGAGGAAGTTGATGGTGGAGCAAGGAGGGTTCAGATGCATGGGAGTTACTGAGAGGGAATTGGTTC AGAGCCGGTTTCTGTTGAAGATGTATTCCTGTGAGAATTACAGTGTGATGAAGCAGGAGGAGGATGGTGGAGAAGGACTC ACTTTGGGTTGGCTTGATCAGCCTCTCTACACGGTCTCGGCATGGACACCGGTTGATGCAGCAGGAAGTTCATCATCATT TTCTCAGCCAGCTTGA
Protein sequence (LotjaGi4g1v0220700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAGCSSPALSSPRHRLRSEASAQFQACHFQLPSMSTQRLDLPRSAFPRKDTTTTSSRSQPLRPVGISVEKTNESKSSTC SLKQNIRLPPLATTTASLGGDIIKGEEFWEKKSTKSLKRVAEHGDDDDDDESFTSRYKRKKGNGNSDEVLEAGENFGSFW SVHSFGGLNLPSSLPFSLNCSGDEERVCFAPAEVISAPLPFSNNNPWLESAVTTITNFGEGSHQHQQHVKEGSVSNDSSD SQSLSLRLNENVTSELEVGNGSGNPHHHEVETGEEDEQEEHRGFELVSFLTGCVDAISSRNVTAINHFIAKLGELASPRG RTSISRICAYFTEALAIRITRLWPHVFHVTTIPRVLDDDETVTALRLLNQITPVPKFLHFTSNEMLLRAFEGKDRVHIID FDIKQGLQWPSLFQSLASRTHPPSHVRITGVGESKQELNETGDRLAGFAEALNLPFEFHPVVDRLEDVRLWMLHVKEHES VAVNCFLQLHKTLYDGSGGALRDFLGLIRSTNPTIVVMAEQEAEHNEARLETRVCNSLKYYSALFDSIDHIGLQEQSPVR IKIEEMYAREIRNIIACEGRERAERHESFAKWRKLMVEQGGFRCMGVTERELVQSRFLLKMYSCENYSVMKQEEDGGEGL TLGWLDQPLYTVSAWTPVDAAGSSSSFSQPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 39 | 66 | 28 | - | – | |
MobiDBLite | 48 | 63 | 16 | - | – | |
MobiDBLite | 119 | 147 | 29 | - | – | |
PANTHER | 169 | 660 | 492 | 1.6E-216 | – | |
PANTHER | 169 | 660 | 492 | 1.6E-216 | ||
MobiDBLite | 220 | 281 | 62 | - | – | |
MobiDBLite | 220 | 260 | 41 | - | – | |
MobiDBLite | 262 | 281 | 20 | - | – | |
ProSiteProfiles | 277 | 656 | 380 | 87.94 | ||
Pfam | 287 | 656 | 370 | 6.9E-123 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0220700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…