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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0222300 |
| Transcript ID | LotjaGi4g1v0222300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SAP domain-containing protein; TAIR: AT5G63460.1 SAP domain-containing protein; Swiss-Prot: sp|Q2H0I3|KU70_CHAGB ATP-dependent DNA helicase II subunit 1; TrEMBL-Plants: tr|I3S8N0|I3S8N0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0222300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:52740193..52745198) extracted from Lotus japonicus Gifu genome v1.2.
AGATGATCCATATTCCATAGTCAAGTGAGAGTCAAGGTCCATAAAGAGTCGTAGAGTAGAGAACGGTGTTGGCGCGCATC TCTCCGAGCAAGCGAACAGTTTCCTTCCCACTATTCATTCACTTGTGATTTTGATTCAATCAAGTGTTATGGATGCAAAT CCTTCTTCTAGGGTTTCTCCATTTCTCACCAATCTTCCCTCTAGAGGTCTCTTCTCTTCCCCGGTCATCTCTTCCAATCC GGTACAATTTCTTCTCTTTTGAACTAGTTTTGATACTCCATTCGATGCTTGGTTGCTTAGAACTGGATATGATGTTTCTG ATCTGTACATGTAGTACAACTTTCTTCCATTTTTTGTGTGTAAGCTTAGGCTGAAGTACTCTAGGTTTTTAAAAACCCCT TTCATTTCATATTCATCTAGTAGAGATTTTAGATCCCTTTGCTTATCTAGTATGAAAAAAAATTTGGATTAGAGCCATGG AAAATGACCTGTACTAGTTGGGCTGGAGAGATTTGAAGGATGAGGTTAGGTTTTTTGTTAAGGGATTCTTAAGGACTTTG AACTCAAGGTTGCTTTAATGCATAATGATTTCTTTAATACAAAGAGAGATCGTGTTCGGCGTTCCATTCCAATTTGTATA AATAGGAGTTTTTATTTCAATCTTTCTTTATCGTTTGCTTTATCAGTGTCTGATATGTGGTAGAAAAGAAGTCTTGTTTA TCTGATAAACCTCCTTCCTTCTGAAGTAAATACCTAGTGATTCTTTCATTCTGGTTTCTTTGACGTGCCTGCTTAACTAT GTTTGTCAATGTAATAATATATGTTTTTTTGGGTTGGAGAAATCGAGTTGTTGGGTACTCCTAATGTGCATCATCTTTTA ATACTGTTATGAGAGACATTATGTTTGAGTTTTATCTTCTGATTGTGCAGGGTGGGATGCGTGTTTATGTATGCGATCAT GAGACTTCACCTCCAGGTCTTCTCATTCATTATCTTAAAGTATTTTAACATGTTGTTCCAACTAACCAAACCTATTGTTA CAGTTTCAAATTTCAATATTTATATATGACCATCCCCAAGCAGTAAATTTAGGGATGAAACCAACAGAACTTTTTATCCT TGTAAAAACTTTTATCTTACCTAGAAATATGCCTGTTAAGATATAATGATATATAATTATTAGCATGATTTTCTATTTAA CCATGAGATTCCTTCTAATCACCAGAGTTAGAAGAGTGACCATAGTAGTAAAACTCAGGATTATGACCTTAATGGGGGAG GGGGCTGTAAATCATAATCGCACAATCATAATACTAATCCTACTTATATATATATATATATATATATATATATATCGCAT GATCATGCGGTTCAAGACCACCCAGCGAATTAATCGTAAGCAAAATTGTAATCTAGCTAAATCAAGCCAAAATCACACCC TAACTTATATATATATATATATCATGTATATATATGTGCATATAAATTCTTATATGCATATAAAATAGCATGTTACTCTA GTAGAAGCCAATTTCAATCAACCAACACTGTCATCAGAGCGTAAACAGAAAACAGAAGAAAAACAGGGAACAGAGAACAG CGTAAACACAGTCCCTTTGCCTTTGTCGTTGCGCCACCATCGCTGGCGGTGGTGGTCAATGTCACCGGTTGCTGCAGGAG TGAGGTCTGTTTGGCTTCAATGGAGTGTGTAGCTGTTGGCTGTTTGCGAACCCTAGGGATTTACACAATGGAAGCGGGTC ACGTTTTCAAAATGGACTGAACCCGGAATGGAGCGGATGTACCAAAATGGCAAACTCCCCCAAAATTGTGATTTTGCAGC GATTAAGGGAGTTAGGGTGTGATTTTGGCTTGATTTAGCTAGATTACAATTTTGCTTACGATTAATTCGCTGGGTGGTCT TGAACCGCATGATCATGCGATTTTGGGATTTAAATCGCGATTTTGACTTCCATGAGAGTGACTCTTTTATATAAGTAATT CATTTACACATAATAATTGAGGCATAACCATCAACTGCAATTTTATCTAGAAAATAGTCTATATGTGAACTTAAATTTCC TATGTACTTTGTCATGTCGGAGTTTAGTATATTGGTTACAGCTTATTTCGTCTTTCTTTTAGTAGTTTTAGTATTGAGCA GTGATGATTTAATGTTGTTTACATTGTAATTTTATGTTTAGAAACTGTGTTCTCTCAACTATTTCAAGAACCTTTGTCAT CTTAATTCCCCTTACTTAAATATTGTTTTTTGAATGGATACTGTTATCGAATTTTTGTTCCTATGGACTTTGTATAAATT AAGGAATCAATTATGACATTAGAAGCTCCTTCCACCCTCTTGGTCATAATATGCCATGATAAGTATTTTTCTTAAACTGT TGTTTTAACCCATAGATTCTAACTATCTTCTTAGTGACTTTTAAAGTAGATAGTTGGTTGTATAATGAAGATTTTGACTC TCTTGTTCATCCAGAGGACCAACTTATTAAGACAAACCAACAGAATATACTGATTCGATCGCTCACACTTAAGAATGGAT CTGATGCTTCAAAAAAGAGGTATAATTCCCAGCTTTTGTTGAAGATTAATACTTCCAAGTGTACGATGTGATCTATACAC AATTTCCATTAAATTTGCTGGGTTTTTCTCTATATTGGTGAAAAACTTGTGAGATAAATTTCTCATACAGCTTTGTAGCT TCTCTTTTGAAGAATTTATCTCATGTTTCATATTCTTTGATGTCCATAATTTTGTCTCGATCTAGTTATATTGAACTCTA TCTCATCGAACTCTTTATCAGGACTGCTGAAAAGGCTTTGGATAGCAGAGCTTCAGCTAAGAGAACAACTCCAATAAATA CTCGTCAAGGTGGGCCCATGTAATCTTGATTTAGCATTAGGTGTAGCCTGAAGTATACTTGGAGGTTTTTGTTTTAAATT TCCTACACCCTTATATGCATATCTATTTTTGCTGGTGACAAGAGTGTTAAGTTTTCTTTTCTTTGAGATTACTTGTTCTT CTTCGTAGTGATTACTTATTGACATGTTGGTTGTCATTCTGCTGGAGCCTGATACATGTTTAGACATGCCCATCTAGCTG AAATCTTTGAATACGTGAACAGTTGATATAAAAAACCAGGTTAAAGTTGTGTTCTTGAAGGCATGCATTTATTTAGTTTT AGAAAAATGTGAATGAGAACATAGGAATGTGAGTATTTTCAAGAAGTATTGTAAACAGTCATTTTATAATTAAGTCCCAT GTCCATGAGGAGTATGTTGCATCCTAAACACTTGGAATTTGTTTTGACCAATACTAGTGTAGTAACCAGTAAGCCATGTT CTTGAAAGGAATTGTATTTATTACACTAGTTTAGGAAAAAGTGAAAAAAGAACCAAGGTATGCTCATTGGTCTTGTTTAT GTACTTGTAAATTCAAATTCAAAATGACCTCAAAAGTCTTAGCCTTGATTTTGAAAAATATGATAGTAATAATCTTTCCG TGCGTTGATTTGATACTTGAGCTTAATCATTCTGATATACATGTATCTTAATGTTCTGCAGCATGTTTTCCTTTCCTACA TGTTTTGCACCATCGAAATACCTGTTGTGGTGTAGAAATTCTTATCAAGTGGGGTTTTTCTTGATCTATCTAATAATTAA TGGTCACTAGTTGAATCTATTGTGAGCCAAGAACAACTGCATTCATTATTAAAAACCTTTGTAAGGCTGATGAGCTTGTA GTTCATTTAGCAAGGCCCAGTTTTTTATGACTTTGGTCTAGTGATAATGATGATAATTACAAAGTTGAACAGCCTGGTGA GCTTAATTTAGGTGTTTGAGGATAGATAAGGATTTGAGTTGATGCCATGGCAACTATTCCTCCCATATTTTGATACTGTA TGTCTCAACATTACTTATTTTATATAGCCTCACTAAAACTTTTAAACATGCAGAAGGATCAAACAGTCAAACACCTAATA GGGACTTTCACAGCTTGACCGTGGAGAGGCTTCGAGCTCTTTTGAAAGCTAAAGGTCTTTCAACCAAAGGGAAGAAGGCA AGTAGTCTTACAGTTTAATCATACATGCATACAAAATTGCATTGAGACAGCATATACATATAGGCATATGAAAGACCACT CACCAGTTTGCTTGATAGTATTTTGTTTACCCATATATACATCGTAATGATATAATGGTTGTGAACTGGTATATTATCTG TCCATGACTGATTACTGTCAAATTACTTTCTGACATAATTTTCATACATATATTTTTTATTTGGGTCATACTAAGTCGTG GAATAAAATCTGTAGGAGGAGCTTATTACGCGTCTAAAAGAAGTAAGTAGTTAAGCAGCATTGGAGGGAGGAATGTCCTG CTCATTATGCATCTAATGTAAGAGTTGTTACTGTATCTTTGTAATGCAACTGAACTATATATGTAAACCTAGTGTGGAAT ACAGTTAGATTTGAACATTATCCAGTCTTGTTGCTATTTGTGTCATGAGTCTCAGTACAATGTATGTTTTGTTCTACGTG TGCTGCTAGCTTTTCATTTCAGAATTCACCTTCCTGATCTGTATCCTTACCTTCAGAGATCAAGTACCTCATGCATCATT GTAACGAGATTGTTTAACAATTATCAAGCTTGTTAATCTCAATCAGTTTGGCTTTATCTTTTTTGCTAAACAAATAAATA TGGCTAATGGATTTTCATTGAGATTGAAGCTGATTAATCAGGATGCGTTTCTGTTTAGTTTTGTTCCATGATTCTTATAT TGCTAAACAAATAAGTGGGAACGCTATAATGTGAAAAAAATGAGTGCTAGCAACCCGCTCTTCTAAAGATGTGAACACAC GGATTTGTTAATTTTTTAAAAAACCAACACAATCAAGATGCATAACTCTTATGAGGGACGAGACTTAACAAAGAAATCAA CAAGTTAGAAGAACTTGAGCGCTAAAAATTAAAGGACAAAATGGTA
CDS sequence (LotjaGi4g1v0222300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCAAATCCTTCTTCTAGGGTTTCTCCATTTCTCACCAATCTTCCCTCTAGAGGTCTCTTCTCTTCCCCGGTCAT CTCTTCCAATCCGGGTGGGATGCGTGTTTATGTATGCGATCATGAGACTTCACCTCCAGAGGACCAACTTATTAAGACAA ACCAACAGAATATACTGATTCGATCGCTCACACTTAAGAATGGATCTGATGCTTCAAAAAAGAGGACTGCTGAAAAGGCT TTGGATAGCAGAGCTTCAGCTAAGAGAACAACTCCAATAAATACTCGTCAAGAAGGATCAAACAGTCAAACACCTAATAG GGACTTTCACAGCTTGACCGTGGAGAGGCTTCGAGCTCTTTTGAAAGCTAAAGGTCTTTCAACCAAAGGGAAGAAGGCAA GTAGTCTTACAGTTTAA
Protein sequence (LotjaGi4g1v0222300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDANPSSRVSPFLTNLPSRGLFSSPVISSNPGGMRVYVCDHETSPPEDQLIKTNQQNILIRSLTLKNGSDASKKRTAEKA LDSRASAKRTTPINTRQEGSNSQTPNRDFHSLTVERLRALLKAKGLSTKGKKASSLTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 134 | 129 | 1.5E-54 | – | |
| PANTHER | 6 | 134 | 129 | 1.5E-54 | ||
| Pfam | 12 | 66 | 55 | 2.5E-13 | ||
| MobiDBLite | 66 | 109 | 44 | - | – | |
| MobiDBLite | 71 | 85 | 15 | - | – | |
| MobiDBLite | 87 | 109 | 23 | - | – | |
| SUPERFAMILY | 104 | 133 | 30 | 8.7E-5 | ||
| Gene3D | 106 | 135 | 30 | 1.3E-6 | ||
| ProSiteProfiles | 109 | 138 | 30 | 9.287 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of proteasomal ubiquitin-dependent protein catabolic process | Any process that modulates the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. |
Expression pattern of LotjaGi4g1v0222300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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