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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0222300 |
| Transcript ID | LotjaGi4g1v0222300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SAP domain-containing protein; TAIR: AT5G63460.1 SAP domain-containing protein; Swiss-Prot: sp|O74871|YCW3_SCHPO Uncharacterized protein C31H12.03c; TrEMBL-Plants: tr|I3S8N0|I3S8N0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0222300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:52740217..52744929) extracted from Lotus japonicus Gifu genome v1.2.
GTGAGAGTCAAGGTCCATAAAGAGTCGTAGAGTAGAGAACGGTGTTGGCGCGCATCTCTCCGAGCAAGCGAACAGTTTCC TTCCCACTATTCATTCACTTGTGATTTTGATTCAATCAAGTGTTATGGATGCAAATCCTTCTTCTAGGGTTTCTCCATTT CTCACCAATCTTCCCTCTAGAGGTCTCTTCTCTTCCCCGGTCATCTCTTCCAATCCGGTACAATTTCTTCTCTTTTGAAC TAGTTTTGATACTCCATTCGATGCTTGGTTGCTTAGAACTGGATATGATGTTTCTGATCTGTACATGTAGTACAACTTTC TTCCATTTTTTGTGTGTAAGCTTAGGCTGAAGTACTCTAGGTTTTTAAAAACCCCTTTCATTTCATATTCATCTAGTAGA GATTTTAGATCCCTTTGCTTATCTAGTATGAAAAAAAATTTGGATTAGAGCCATGGAAAATGACCTGTACTAGTTGGGCT GGAGAGATTTGAAGGATGAGGTTAGGTTTTTTGTTAAGGGATTCTTAAGGACTTTGAACTCAAGGTTGCTTTAATGCATA ATGATTTCTTTAATACAAAGAGAGATCGTGTTCGGCGTTCCATTCCAATTTGTATAAATAGGAGTTTTTATTTCAATCTT TCTTTATCGTTTGCTTTATCAGTGTCTGATATGTGGTAGAAAAGAAGTCTTGTTTATCTGATAAACCTCCTTCCTTCTGA AGTAAATACCTAGTGATTCTTTCATTCTGGTTTCTTTGACGTGCCTGCTTAACTATGTTTGTCAATGTAATAATATATGT TTTTTTGGGTTGGAGAAATCGAGTTGTTGGGTACTCCTAATGTGCATCATCTTTTAATACTGTTATGAGAGACATTATGT TTGAGTTTTATCTTCTGATTGTGCAGGGTGGGATGCGTGTTTATGTATGCGATCATGAGACTTCACCTCCAGGTCTTCTC ATTCATTATCTTAAAGTATTTTAACATGTTGTTCCAACTAACCAAACCTATTGTTACAGTTTCAAATTTCAATATTTATA TATGACCATCCCCAAGCAGTAAATTTAGGGATGAAACCAACAGAACTTTTTATCCTTGTAAAAACTTTTATCTTACCTAG AAATATGCCTGTTAAGATATAATGATATATAATTATTAGCATGATTTTCTATTTAACCATGAGATTCCTTCTAATCACCA GAGTTAGAAGAGTGACCATAGTAGTAAAACTCAGGATTATGACCTTAATGGGGGAGGGGGCTGTAAATCATAATCGCACA ATCATAATACTAATCCTACTTATATATATATATATATATATATATATATATCGCATGATCATGCGGTTCAAGACCACCCA GCGAATTAATCGTAAGCAAAATTGTAATCTAGCTAAATCAAGCCAAAATCACACCCTAACTTATATATATATATATATCA TGTATATATATGTGCATATAAATTCTTATATGCATATAAAATAGCATGTTACTCTAGTAGAAGCCAATTTCAATCAACCA ACACTGTCATCAGAGCGTAAACAGAAAACAGAAGAAAAACAGGGAACAGAGAACAGCGTAAACACAGTCCCTTTGCCTTT GTCGTTGCGCCACCATCGCTGGCGGTGGTGGTCAATGTCACCGGTTGCTGCAGGAGTGAGGTCTGTTTGGCTTCAATGGA GTGTGTAGCTGTTGGCTGTTTGCGAACCCTAGGGATTTACACAATGGAAGCGGGTCACGTTTTCAAAATGGACTGAACCC GGAATGGAGCGGATGTACCAAAATGGCAAACTCCCCCAAAATTGTGATTTTGCAGCGATTAAGGGAGTTAGGGTGTGATT TTGGCTTGATTTAGCTAGATTACAATTTTGCTTACGATTAATTCGCTGGGTGGTCTTGAACCGCATGATCATGCGATTTT GGGATTTAAATCGCGATTTTGACTTCCATGAGAGTGACTCTTTTATATAAGTAATTCATTTACACATAATAATTGAGGCA TAACCATCAACTGCAATTTTATCTAGAAAATAGTCTATATGTGAACTTAAATTTCCTATGTACTTTGTCATGTCGGAGTT TAGTATATTGGTTACAGCTTATTTCGTCTTTCTTTTAGTAGTTTTAGTATTGAGCAGTGATGATTTAATGTTGTTTACAT TGTAATTTTATGTTTAGAAACTGTGTTCTCTCAACTATTTCAAGAACCTTTGTCATCTTAATTCCCCTTACTTAAATATT GTTTTTTGAATGGATACTGTTATCGAATTTTTGTTCCTATGGACTTTGTATAAATTAAGGAATCAATTATGACATTAGAA GCTCCTTCCACCCTCTTGGTCATAATATGCCATGATAAGTATTTTTCTTAAACTGTTGTTTTAACCCATAGATTCTAACT ATCTTCTTAGTGACTTTTAAAGTAGATAGTTGGTTGTATAATGAAGATTTTGACTCTCTTGTTCATCCAGAGGACCAACT TATTAAGACAAACCAACAGAATATACTGATTCGATCGCTCACACTTAAGAATGGATCTGATGCTTCAAAAAAGAGGTATA ATTCCCAGCTTTTGTTGAAGATTAATACTTCCAAGTGTACGATGTGATCTATACACAATTTCCATTAAATTTGCTGGGTT TTTCTCTATATTGGTGAAAAACTTGTGAGATAAATTTCTCATACAGCTTTGTAGCTTCTCTTTTGAAGAATTTATCTCAT GTTTCATATTCTTTGATGTCCATAATTTTGTCTCGATCTAGTTATATTGAACTCTATCTCATCGAACTCTTTATCAGGAC TGCTGAAAAGGCTTTGGATAGCAGAGCTTCAGCTAAGAGAACAACTCCAATAAATACTCGTCAAGGTGGGCCCATGTAAT CTTGATTTAGCATTAGGTGTAGCCTGAAGTATACTTGGAGGTTTTTGTTTTAAATTTCCTACACCCTTATATGCATATCT ATTTTTGCTGGTGACAAGAGTGTTAAGTTTTCTTTTCTTTGAGATTACTTGTTCTTCTTCGTAGTGATTACTTATTGACA TGTTGGTTGTCATTCTGCTGGAGCCTGATACATGTTTAGACATGCCCATCTAGCTGAAATCTTTGAATACGTGAACAGTT GATATAAAAAACCAGGTTAAAGTTGTGTTCTTGAAGGCATGCATTTATTTAGTTTTAGAAAAATGTGAATGAGAACATAG GAATGTGAGTATTTTCAAGAAGTATTGTAAACAGTCATTTTATAATTAAGTCCCATGTCCATGAGGAGTATGTTGCATCC TAAACACTTGGAATTTGTTTTGACCAATACTAGTGTAGTAACCAGTAAGCCATGTTCTTGAAAGGAATTGTATTTATTAC ACTAGTTTAGGAAAAAGTGAAAAAAGAACCAAGGTATGCTCATTGGTCTTGTTTATGTACTTGTAAATTCAAATTCAAAA TGACCTCAAAAGTCTTAGCCTTGATTTTGAAAAATATGATAGTAATAATCTTTCCGTGCGTTGATTTGATACTTGAGCTT AATCATTCTGATATACATGTATCTTAATGTTCTGCAGCATGTTTTCCTTTCCTACATGTTTTGCACCATCGAAATACCTG TTGTGGTGTAGAAATTCTTATCAAGTGGGGTTTTTCTTGATCTATCTAATAATTAATGGTCACTAGTTGAATCTATTGTG AGCCAAGAACAACTGCATTCATTATTAAAAACCTTTGTAAGGCTGATGAGCTTGTAGTTCATTTAGCAAGGCCCAGTTTT TTATGACTTTGGTCTAGTGATAATGATGATAATTACAAAGTTGAACAGCCTGGTGAGCTTAATTTAGGTGTTTGAGGATA GATAAGGATTTGAGTTGATGCCATGGCAACTATTCCTCCCATATTTTGATACTGTATGTCTCAACATTACTTATTTTATA TAGCCTCACTAAAACTTTTAAACATGCAGAAGGATCAAACAGTCAAACACCTAATAGGGACTTTCACAGCTTGACCGTGG AGAGGCTTCGAGCTCTTTTGAAAGCTAAAGGTCTTTCAACCAAAGGGAAGAAGGCAAGTAGTCTTACAGTTTAATCATAC ATGCATACAAAATTGCATTGAGACAGCATATACATATAGGCATATGAAAGACCACTCACCAGTTTGCTTGATAGTATTTT GTTTACCCATATATACATCGTAATGATATAATGGTTGTGAACTGGTATATTATCTGTCCATGACTGATTACTGTCAAATT ACTTTCTGACATAATTTTCATACATATATTTTTTATTTGGGTCATACTAAGTCGTGGAATAAAATCTGTAGGAGGAGCTT ATTACGCGTCTAAAAGAAGTAAGTAGTTAAGCAGCATTGGAGGGAGGAATGTCCTGCTCATTATGCATCTAATGTAAGAG TTGTTACTGTATCTTTGTAATGCAACTGAACTATATATGTAAACCTAGTGTGGAATACAGTTAGATTTGAACATTATCCA GTCTTGTTGCTATTTGTGTCATGAGTCTCAGTACAATGTATGTTTTGTTCTACGTGTGCTGCTAGCTTTTCATTTCAGAA TTCACCTTCCTGATCTGTATCCTTACCTTCAGAGATCAAGTACCTCATGCATCATTGTAACGAGATTGTTTAACAATTAT CAAGCTTGTTAATCTCAATCAGTTTGGCTTTATCTTTTTTGCTAAACAAATAAATATGGCTAATGGATTTTCA
CDS sequence (LotjaGi4g1v0222300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCAAATCCTTCTTCTAGGGTTTCTCCATTTCTCACCAATCTTCCCTCTAGAGGTCTCTTCTCTTCCCCGGTCAT CTCTTCCAATCCGGGTGGGATGCGTGTTTATGTATGCGATCATGAGACTTCACCTCCAGAGGACCAACTTATTAAGACAA ACCAACAGAATATACTGATTCGATCGCTCACACTTAAGAATGGATCTGATGCTTCAAAAAAGAGGACTGCTGAAAAGGCT TTGGATAGCAGAGCTTCAGCTAAGAGAACAACTCCAATAAATACTCGTCAAGAAGGATCAAACAGTCAAACACCTAATAG GGACTTTCACAGCTTGACCGTGGAGAGGCTTCGAGCTCTTTTGAAAGCTAAAGGTCTTTCAACCAAAGGGAAGAAGGAGG AGCTTATTACGCGTCTAAAAGAAGTAAGTAGTTAA
Protein sequence (LotjaGi4g1v0222300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDANPSSRVSPFLTNLPSRGLFSSPVISSNPGGMRVYVCDHETSPPEDQLIKTNQQNILIRSLTLKNGSDASKKRTAEKA LDSRASAKRTTPINTRQEGSNSQTPNRDFHSLTVERLRALLKAKGLSTKGKKEELITRLKEVSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 141 | 136 | 5.9E-57 | – | |
| PANTHER | 6 | 141 | 136 | 5.9E-57 | ||
| Pfam | 12 | 66 | 55 | 2.7E-13 | ||
| MobiDBLite | 66 | 111 | 46 | - | – | |
| MobiDBLite | 71 | 85 | 15 | - | – | |
| MobiDBLite | 87 | 110 | 24 | - | – | |
| SUPERFAMILY | 104 | 142 | 39 | 6.96E-9 | ||
| Gene3D | 106 | 144 | 39 | 1.5E-11 | ||
| ProSiteProfiles | 109 | 143 | 35 | 12.503 | ||
| SMART | 109 | 143 | 35 | 2.8E-7 | ||
| Pfam | 110 | 141 | 32 | 5.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of proteasomal ubiquitin-dependent protein catabolic process | Any process that modulates the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. |
Expression pattern of LotjaGi4g1v0222300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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