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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0223000 |
| Transcript ID | LotjaGi4g1v0223000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Argininosuccinate synthase; TAIR: AT4G24830.1 arginosuccinate synthase family; Swiss-Prot: sp|Q9SZX3|ASSY_ARATH Argininosuccinate synthase, chloroplastic; TrEMBL-Plants: tr|G7JWM6|G7JWM6_MEDTR Argininosuccinate synthase; Found in the gene: LotjaGi4g1v0223000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:52791555..52795070) extracted from Lotus japonicus Gifu genome v1.2.
TTATCGTTTTGTAAATGAGCATTCCCTAACAGAACTATGTCATGATTGCCATTGGCAAATAAATTTCAGAAGGGGTTTTT TGTAGCTTCTTATGCTATGGATGGTTTTATGTTGGAAACAAATGAGTTTCTTAGAGGCGCTTGTGTTCACCGCTTGCTAT ATTGATTTGATGCTGTTTGATTTCAAGTTTAAGGTCTGTAATGTTATTGAAATTCGCATGACATGCAGCTATAAAAGCAG TTCTGCGCAATGATACAGATGTAGAAATTTCTGAAACCAAGAAGGGTAGTGGGCTACGAGGCAAATTGAATAAGGTTGTT CTTGCTTACAGTGGTGGCTTAGACACATCGGTCATTGTGCCATGGCTGAGGTATAGCCGTTGCTTGTTCTTTTTCAATTT TCTGTTATATCAGATTTTTTTGATATTAGATTTTTTCTATCAGATTTTTCTTGATGGCAAATACTTCTATGTTGAAAAAG ATGTCAATTTTTTTATGTAGAATGTGTAAATAGGGGTTACAAACCATTTAGAGATTGTATACATGACTTGATGAGTTTTA AACCTGAAAAATTCAAATTTTGTAGAGAAGCATGGTAGCAAAATAGACATTTCTGAATTTTTTTTGGTTGTGATAGGGGA TATTCAACAGTAGATACCCATGAAGTTACCTATTGTTGTATAATTGTGCCCTTATTATAATATCTTATTTAGTGATTTTG GCATTGCAGAGAGAATTACGGTTGTGAAGTCGTTTGCTTCACTGCTGATGTTGGCCAAGTATGTTATGCCTTTTAGTTTA ATTTCTTTGATCAACGTTATTGCTGTGTAAACTTGGTTCCTGGAAAAGGTGTTTTAAGATTGTGAACTTCTGGCTTGGGG AATTTGCTCTACTGAATTTGTTGTTTATTTTCTGCATGTCTGGCAAAAAAACTGAATTACACAGGGACTAAAAGAGTTGG AAGGTTTAGAAGAGAAAGCCAAAGCCAGTGGAGCCTCTCAATTAGTGGTTAAGGACTTGCAAGAGGAATTTGTTAAAGAT TACATATTCCCTTGCCTGCGTGCTGGTGCCACTTATGAGAGGAAGTATTTGCTTGGGACTGCGATGGCTCGCCCTGTAAT TGCTAAGGTAACTTCTTGAAGTGTTCTATTTTATCTCACTTGGTAAAACCATTTCTTCTATTGCTCTGTTAGCTCTTTGA GTGCTGTAGTCACTTTTCTTTTTCTCTTGATATATTGAAAAAAATCACTATTCAATGATTATGGAACTTAGTTATATTAT ATATTTCCCCCCTTATATAAACATGTATTGATTCATACCTGCTGACGGATAGGCCATGGTTGATGTTGCTAAAGAAGTCG GAGCTGACGCTGTCTCCCATGGGTGCACCGGGAAAGGAAATGATCAGGCATGTCTTACTATTATTATGCTCACAATAAAC ATCATGTCAGTTATTCTATTCTGACACATTTATTTATGTATGAACATTTAGGTTCGATTTGAGCTGACGTTCTTTGCTCT AAACCCCAAGCTAAATGTTGTGGCTCCATGGAGGGAGTGGGATATTACAGGGAGAGAAGATGCTATTGAGTATGCTAAAA AGCATAATATTCCTGTCCCAGTGACAAAGAAATCCATATATAGCAGGGATAGAAACCTGTGGCACCTTAGCCATGAGGTA GGCACTTTGGTTACACTCAGCTGTTTACTAAATGTTGATAACTGAGGGGTGTCATGTCGGCATCTGGAATCAAGACCCGA TTCCTTTTGATTAATATGATCTATCTGTGCATGGTTCACTACTATAGGAACTCCCACAATCCCACAGCCATATTCATCAC AGGGCTGGATATTACTGTCATTGATACATGTCTGCCTATTTTATGTACCTTTTTTATGTGAAAACCCTCATTTTTATTCT CCAGAGATACAAGCACTATCACTTTAGTTCATAAAAGATTCTCAAAACTAATGAATGTCAGGTCTGGGGTTTCTGCCTTG TTATCAATTAGTTGTCAATTTAGTTCATCAATAATTCGAAATGTCATCGTTTGGGTCTTTTTATTATCCTCTGTTTGAAG GTTGTCGATGCTGACATAGCCCGTTATCTGCTTGTTTGGATGAACATACACGGGCTGTTACCTACTTGCCATATGCGTGT GGTCATTGGAAGGCCTTCTATCATAAAGTAACAGAAGGACCAAAATGGTGATATTTTAAATCTGTTATGAACAGCTAAAT TGGTGAAAAATCTTCCAAGAACTAAAGTGATGGCACTTTAATCTTTTAAGAACAAAAATTGGATTTTACTGCAATTTCTT TCTAAAAGCATGACACAGATTCTTGAAAACAGTTTCGATTCATTCACACCCAGTTTCTCTTCCATCTCATTTTTGCTGAC CTTTTCTTCATATCTCTTTCTTGTGTTACTATTATGTCACCCATTACATCTGCCACTTCTCTCTCTTCTATTCCTATATC TCTCTACAGCGGAGGTGGAATCGAGTGGTGAACACATGTTTTTTACTTGAAAGTACTTCAAGGAATCCTATAATTTGTTA CTGGTCTTCAGGCCATGTGTGAACCCTCATTAGACGCACTAGATCACTTCTTTGCTGTAATGTTGGAAGTTGCTAATCTG TAGTTTGATCTAGGGTAATGCTTTATGCATTGTAGCTCTAAAAACTATATTTTGGAAATTACCTATTACTTTTTCTCTAA TATATATGCAACCTATGACACTGAAGGGTGATAAGTTGGAAGACCCAGCTAATGAGCCCCAAAAGGATATGTACATGATG TCTGTAGATCCTGAGGATGCTCCAGACAAGCCAGAGTAAGCTTCCTTCAGAACTTGTGATTTCACTTTATATATAACCTC CAATTTGTGGTTAAAAATGTTGTATTTCACATATTTTGGATTTTGTATTTTAAATTTATGAAAGCATTCGTGATGCCATG CAGATATGTGGAAATTGGGATAGAGGCAGGGCTTCCTGTTTCAGTCAACGGGAAGAGGCTTTCGCCAGCGTCGTTACTAG CAGAGCTCAATGAGATTGGCGGAAGGCATGGAATTGGCCGGGTTGACATGGTTGAGAATCGGCTCGTAGGTATGAAGAGC CGTGGAGTTTACGAAACTCCTGGCGGAACCATCCTGTTCGCTGCAGCAAGGGAGCTAGAGCTTCTGACGCTTGACCAAAA AGCAATACAAGTTAAAGATTCTCTAGCCCTTACGTATGCAGAGTTAGTGTATGCTGGCAGATGGTTTGATCCGCTTCGCG AGTCCTTGGATGCGTTTATGCAGGAGATCACAGCGACCACAACAGGTTCTGTGACTTTGAAACTGTACAAAGGTTCTGTT GGTGTAACCAGTAGGCAGAGCCCCTTTAGCCTGTACAGGGAAGACATTTCATCATTCGAGAACGGGGAGATATATGATCA AGCTGATGCTGCGGGCTTTATTCGGCTTTATGGTCTTCCCATGAGGGTTCGAGCAATGCTTAAGCAGGGTATCTAA
CDS sequence (LotjaGi4g1v0223000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTTTTATGTTGGAAACAAATGAGTTTCTTAGAGGCGCTTGTGTTCACCGCTTGCTATCTATAAAAGCAGTTCT GCGCAATGATACAGATGTAGAAATTTCTGAAACCAAGAAGGGTAGTGGGCTACGAGGCAAATTGAATAAGGTTGTTCTTG CTTACAGTGGTGGCTTAGACACATCGGTCATTGTGCCATGGCTGAGAGAGAATTACGGTTGTGAAGTCGTTTGCTTCACT GCTGATGTTGGCCAAGGACTAAAAGAGTTGGAAGGTTTAGAAGAGAAAGCCAAAGCCAGTGGAGCCTCTCAATTAGTGGT TAAGGACTTGCAAGAGGAATTTGTTAAAGATTACATATTCCCTTGCCTGCGTGCTGGTGCCACTTATGAGAGGAAGTATT TGCTTGGGACTGCGATGGCTCGCCCTGTAATTGCTAAGGCCATGGTTGATGTTGCTAAAGAAGTCGGAGCTGACGCTGTC TCCCATGGGTGCACCGGGAAAGGAAATGATCAGGTTCGATTTGAGCTGACGTTCTTTGCTCTAAACCCCAAGCTAAATGT TGTGGCTCCATGGAGGGAGTGGGATATTACAGGGAGAGAAGATGCTATTGAGTATGCTAAAAAGCATAATATTCCTGTCC CAGTGACAAAGAAATCCATATATAGCAGGGATAGAAACCTGTGGCACCTTAGCCATGAGGGTGATAAGTTGGAAGACCCA GCTAATGAGCCCCAAAAGGATATGTACATGATGTCTGTAGATCCTGAGGATGCTCCAGACAAGCCAGAATATGTGGAAAT TGGGATAGAGGCAGGGCTTCCTGTTTCAGTCAACGGGAAGAGGCTTTCGCCAGCGTCGTTACTAGCAGAGCTCAATGAGA TTGGCGGAAGGCATGGAATTGGCCGGGTTGACATGGTTGAGAATCGGCTCGTAGGTATGAAGAGCCGTGGAGTTTACGAA ACTCCTGGCGGAACCATCCTGTTCGCTGCAGCAAGGGAGCTAGAGCTTCTGACGCTTGACCAAAAAGCAATACAAGTTAA AGATTCTCTAGCCCTTACGTATGCAGAGTTAGTGTATGCTGGCAGATGGTTTGATCCGCTTCGCGAGTCCTTGGATGCGT TTATGCAGGAGATCACAGCGACCACAACAGGTTCTGTGACTTTGAAACTGTACAAAGGTTCTGTTGGTGTAACCAGTAGG CAGAGCCCCTTTAGCCTGTACAGGGAAGACATTTCATCATTCGAGAACGGGGAGATATATGATCAAGCTGATGCTGCGGG CTTTATTCGGCTTTATGGTCTTCCCATGAGGGTTCGAGCAATGCTTAAGCAGGGTATCTAA
Protein sequence (LotjaGi4g1v0223000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGFMLETNEFLRGACVHRLLSIKAVLRNDTDVEISETKKGSGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFT ADVGQGLKELEGLEEKAKASGASQLVVKDLQEEFVKDYIFPCLRAGATYERKYLLGTAMARPVIAKAMVDVAKEVGADAV SHGCTGKGNDQVRFELTFFALNPKLNVVAPWREWDITGREDAIEYAKKHNIPVPVTKKSIYSRDRNLWHLSHEGDKLEDP ANEPQKDMYMMSVDPEDAPDKPEYVEIGIEAGLPVSVNGKRLSPASLLAELNEIGGRHGIGRVDMVENRLVGMKSRGVYE TPGGTILFAAARELELLTLDQKAIQVKDSLALTYAELVYAGRWFDPLRESLDAFMQEITATTTGSVTLKLYKGSVGVTSR QSPFSLYREDISSFENGEIYDQADAAGFIRLYGLPMRVRAMLKQGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 46 | 443 | 398 | 8.8E-201 | – | |
| PANTHER | 46 | 443 | 398 | 8.8E-201 | ||
| Hamap | 48 | 444 | 397 | 53.669 | ||
| SUPERFAMILY | 49 | 218 | 170 | 1.28E-47 | – | |
| Gene3D | 49 | 219 | 171 | 1.9E-72 | ||
| TIGRFAM | 50 | 441 | 392 | 1.4E-151 | ||
| CDD | 51 | 435 | 385 | 0.0 | ||
| Pfam | 52 | 438 | 387 | 3.1E-158 | ||
| ProSitePatterns | 54 | 62 | 9 | - | ||
| ProSitePatterns | 163 | 174 | 12 | - | ||
| SUPERFAMILY | 218 | 444 | 227 | 3.14E-90 | ||
| Gene3D | 221 | 445 | 225 | 1.9E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Argininosuccinate synthase activity | Catalysis of the reaction: ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Arginine biosynthetic process | The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid. |
Expression pattern of LotjaGi4g1v0223000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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