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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0225000 |
| Transcript ID | LotjaGi4g1v0225000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S acidic ribosomal protein P0; TAIR: AT2G40010.1 Ribosomal protein L10 family protein; Swiss-Prot: sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0; TrEMBL-Plants: tr|I3SXM4|I3SXM4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0225000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53063646..53065979) extracted from Lotus japonicus Gifu genome v1.2.
AATAGGCCCAATTTCAAAAAAAAATTGATACTAGTAACTAGTACCTAAAGCCCAAACTATCCCTTAAACCCAAGTGCTCC TCCTTCGATTTCCATCTTCTCCCCGAATTCGAACTCAATCACCATCTCCATAGCCAAACCTTAGCCGCACCACTCCGCCA CCGCGAACCGGTGCCGCTCCATCATCTTTTACCATCTCGCAGCCAACCTCGCGGCGGCATCTTCAACGGTGTTTTTCTAG ATTTGGACTCTATTTTCATGTTCATTTTTGCTTGTGTTTGATTTTTTTTTATTTTTTATTTTGATTTGTGTATGAGTGTT GTTATGGAAAATTTTCCTCTGCATTAGATTGTGCTATTAGTATTGGATATGCCTTTTGAGTTCTGGTCACTGTAGTGTTG AGTGAGAGAATGAAACAATCTTTTTGTAGATTAAACTTCAAAGGATATATAAATCTAGAAAGAGAAATTTGTAATGAATT CAATTGAAAAATGACTTGTCAGTTCAGTTCAATTTCATATTTCAGTGGCTGTTCTGTTTTCTCTTAATTGCCTTTATTTC ATGACCTCTATATTTGAATGCAATTTTATATTTAGTCAATGAAATGATGAACTCTTATGCTTGGATTAAAAAAAGAGATA AAACATATATGAGTAAATTGTTAATGCGCTATGGTGACGATGTAGGGGAAGAAGAACTTCGAGAGTCAAGGAGCAACAAT GGCGGGGAAGGTGTCGAAGGCAGCTTACGATTCGAAGATGTGTAAGCTTCTTCGAGAGTACAGCCAGGTGCTGGTGGTTT CCGCAGACAATGTTGGGTCGAACCAGCTTCAGGGGATACGGAGGGCACTCCACGGTGATTCGGTGGTGGTGATGGGAAAG AACTCGTTGATGAAACGTTCTATCATTGACGATGCAGAGAAAACAGGCAACAAGGCCTTCCTTAACCTTGTTCCCCTCCT CGTCGGGAACGTGGCTTTGATTTTCACCAAAGGTGACTTAAGGGAGGTCAGCGAACAGGTTGCAAAGTACAAGGTTGTTG ATCCTATTCTCATGTGCCCTAAGTACATGACCTACGACTCATACCGCACTTGTTCCTATTTGCAATCTGGACAATTACCG CTAGGCCTCACTTGTTGTAACCAGCAATCTGCACAGACTTCCGAGCCTTTTCTAGTATGCTCAAAATTTTTGCCGCACCA GCATTGTCATTTGATGAGATCAAGACAGTTTTTGATGACCAGTATATGGGCTCCTTTTCTCCTTTTGGCTGGTAACTTGT GATGTGGAAGTAGCATTTTGATTTTGATCCCATGGTTTGTAGTTTTATTCAGAGAATGATTGTCACAATACACCCATCAC TCATCTTTTCCTTGAGCACTGTGGCCTTTCAAACTCTTTGTTGTTGAATTCTCCCTTTTCAGGGAATGGTGGAGAATAAA TATGATTTTGATCACGATTGGATTCTGATGTAAGCAAAAAAAAACATAGATAAAATTTGTTCTCTCTATTTTATAAACAT ATGCTGAGATGGTCAACTCTACCCTATTAGATGGCTAGTACCAGAAGATTTCATCAAGTTTTGAAGCCTAAGTTCTATGC TAAAGCATTAGAAGATGCACAGTACTAAAGCAATCATGCCAAGTTCTAATTCATTTGAACATGCTTAAGATCACCTAAGG TAGACGCTCTAATGTCAAGCATTTCAAGACCTACTCCCTGGAAGACAACATTACTAGTCACTTACACAGTTGCTTTCCAG AAAACCTGTGAAGTTGTGCTGTCCTCTGCTTCATCATACTTTGATGATACATTCTGAGCATGCAAAAAATGCCAAAGGAT ATGCATTAAGTTCTTCTGTCTTAATGTAAAATTGCTGCTAAGGGAAGAGAGGATTCAAACGACTATTTTGTTCTCTCATG GTACTCAAGAAGACCGTGAAGAATGGAGAGCATAAGGACTGAACATCATTCCTAATTTTGAAATGAATATTGTGAAAGCT CTCAACAACTTAGCTGAAATCGTAACTCTGTCTAGAATGTGAAAGCTCTTGACAACTTAGTTGAAATCATTCTTCCTAGC ATTCATTTCTAATTTTGATTATATCTACTTCAATCTTTTGATTGGGAGAAAGTTTGAAGAGGCTATTGAAAGACTATTGT GGAAGTCTAAAGAAACAATGTCATATACTTGTATCTCGCGAGAAAGAGAATGGGAAATTCCTTAAGTGAGTAAGGAGATT AGACGTAGTCCGCGTGGTTTGAGATGAACTAGAATAAATATCGTTTGTGTTCTTTTATCCCTTATCTTTTTCATGCATTC TACACTAATGTAAG
CDS sequence (LotjaGi4g1v0225000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGGAAGGTGTCGAAGGCAGCTTACGATTCGAAGATGTGTAAGCTTCTTCGAGAGTACAGCCAGGTGCTGGTGGT TTCCGCAGACAATGTTGGGTCGAACCAGCTTCAGGGGATACGGAGGGCACTCCACGGTGATTCGGTGGTGGTGATGGGAA AGAACTCGTTGATGAAACGTTCTATCATTGACGATGCAGAGAAAACAGGCAACAAGGCCTTCCTTAACCTTGTTCCCCTC CTCGTCGGGAACGTGGCTTTGATTTTCACCAAAGGTGACTTAAGGGAGGTCAGCGAACAGGTTGCAAAGTACAAGGTTGT TGATCCTATTCTCATGTGCCCTAAGTACATGACCTACGACTCATACCGCACTTGTTCCTATTTGCAATCTGGACAATTAC CGCTAGGCCTCACTTGTTGTAACCAGCAATCTGCACAGACTTCCGAGCCTTTTCTAGTATGCTCAAAATTTTTGCCGCAC CAGCATTGTCATTTGATGAGATCAAGACAGTTTTTGATGACCAGTATATGGGCTCCTTTTCTCCTTTTGGCTGGTAACTT GTGA
Protein sequence (LotjaGi4g1v0225000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGKVSKAAYDSKMCKLLREYSQVLVVSADNVGSNQLQGIRRALHGDSVVVMGKNSLMKRSIIDDAEKTGNKAFLNLVPL LVGNVALIFTKGDLREVSEQVAKYKVVDPILMCPKYMTYDSYRTCSYLQSGQLPLGLTCCNQQSAQTSEPFLVCSKFLPH QHCHLMRSRQFLMTSIWAPFLLLAGNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 187 | 187 | 1.2E-121 | – | |
| PANTHER | 1 | 187 | 187 | 1.2E-121 | – | |
| Gene3D | 3 | 127 | 125 | 6.1E-32 | ||
| Pfam | 6 | 104 | 99 | 9.0E-18 | ||
| SUPERFAMILY | 7 | 104 | 98 | 6.41E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi4g1v0225000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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