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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0225400 |
Transcript ID | LotjaGi4g1v0225400.2 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Programmed cell death protein 4; TAIR: AT5G63190.1 MA3 domain-containing protein; Swiss-Prot: sp|Q53EL6|PDCD4_HUMAN Programmed cell death protein 4; TrEMBL-Plants: tr|A0A0L9TQG9|A0A0L9TQG9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53097617..53099708) extracted from Lotus japonicus Gifu genome v1.2.
GGTACTTGGGGAAAATTGATTGACACGGATGTTGAATCTCACTTAGATCGGAATGATCCAAATTATGACAGTGGCGAGGT ACTCTTTTCCGTCTTTATTATAGTAGTTTTTTGACATATTTCATATCACTAGTTGCTTGGAACTGTGATATGACGCTTGT TGTAGCAGTAGTAGACTCTTCCTCTTTTTCTTAATAACTGTACTTTTTGCCTGTTTTGTTCCCCCTTTCTCTCCATTTCA AGGCTATGGTGATAAGTACATGACACTTGCCTATTTGCATGTTCTTGCTAATTTATAGGAACCCTATCAGCTTGTTGGAT CTACTATTACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAATACTTCAGTAATGGAGATGTT GACTTAGCAGCATCTGACCTCAAAGAACTAGGCTCAAGTGAATATTATGCATATTTCATTAAGCGTCTTGTGTCCTTGGC AATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCCGTTCTGCTTTCAGCATTGTATGCTGATGTCATTAGCCCTGCAC AGATTAGGGATGGGTTTTTTATGCTGATTGAATCTGCTGATGATCTTGCAGTAGATATCCTGGATGCAGTTGACATCCTT GCTTTATTCCTTGCACGTGCTGTTGTTGATGACATTCTTCCTCCGGCCTTTCTTGCCAGGGCAAGGAAGGCTCTTCCAGA ATCTTCCAAGGGAGCTCAGGTAATTCAAACTGCTGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAAA GGCGATGGGGTGGTACCACTCACATCACTGTTGAAGAAGTGAAGAAGAAGATTGCTGATTTACTTAGAGAATATGTGGAT AGTGGTGACACACTTGAAGCCTGCAGGTGTATTCGTGAATTGGGGGTTTCATTCTTCCACCATGAGGTTGTGAAGAGGGC TTTGGTACTTGCCATGGAAAATCGTTCAGCGGAACCTCTATTGTTGAAGCTATTAAAAGAAGCGGCTGAAGAAGGACTTA TTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGAAGAAGGCCTGGATGATCTTGCTCTTGATATCCCATCCGCC AAAGCCTTGTTTCAGTCACTTGTCCCCAAGGCAATATCTGAAGGGTGGCTTGATGCTTCATTTACCGATTCTGCTGGTGA AGATGGGGACATCCAAGTTGAAGATGAGAAGTTGAGGAAGTACAAAGAGGAAATTGTATCTATAATTCATGAGTATTTTC TCTCTGATGACATTCCTGAACTCATTAGAAGTCTAGAAGATCTTGGAGCACCTGAGTATAACCCAATATTTTTGAAGAAG CTTATAACTCTTGCTATGGATCGAAAGAACAGAGAAAAGGAAATGGCATCTGTCCTGTTATCTGCTCTTCATATAGAGAT ATTCTCAACAGAGGATATAGTCAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGACACAGCACTGGATATTTTGGATG CTTCAAATGAGCTTGCTCTTTTTCTAGCTCGGGCTGTGATTGATGATGTTCTTGCCCCATTGAATTTGGAAGAAATTGGC AGCAGGTTAACCCCAAAATGCAGTGGAAGTGAAACTGTGCGCATGGCTCGGACTCTGGTTTCTGCTCGCCATGCTGGTGA AAGGCTTTTGAGGTGCTGGGGTGGGGGAACTGGATGGGCCGTGGAGGATGCTAAGGACAAGATCATGAAGCTCCTGGAGG AGTATGAAAGCAGTGGGGTCGTGAGCGAAGCATGCCAGTGTATTCGTGACCTGGGAATGTCTTTCTTCAACCATGAGGTA GTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGCAGAATGACAGGATGCTAGATCTGCTGCAGGAGTGCTTCAGTGAAGG ACTGATCACCATCAACCAGATGACCAAAGGGTTCACCCGTGTTAAGGATAGTCTTGATGATCTGGCTCTGGACATTCCAA ATGCAAAGGAAAAATTTGGCTTCTATGTGGAGCAGGCTCAAGCAAAGGGCTGGCTTCTACCATCATTTGATTCGTCTACC ACAGATGTCTAA
CDS sequence (LotjaGi4g1v0225400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCCGTTCTGCTTTCAGCATTGTATGCTGATGTCATTAGCCCTGCACA GATTAGGGATGGGTTTTTTATGCTGATTGAATCTGCTGATGATCTTGCAGTAGATATCCTGGATGCAGTTGACATCCTTG CTTTATTCCTTGCACGTGCTGTTGTTGATGACATTCTTCCTCCGGCCTTTCTTGCCAGGGCAAGGAAGGCTCTTCCAGAA TCTTCCAAGGGAGCTCAGGTAATTCAAACTGCTGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAAAG GCGATGGGGTGGTACCACTCACATCACTGTTGAAGAAGTGAAGAAGAAGATTGCTGATTTACTTAGAGAATATGTGGATA GTGGTGACACACTTGAAGCCTGCAGGTGTATTCGTGAATTGGGGGTTTCATTCTTCCACCATGAGGTTGTGAAGAGGGCT TTGGTACTTGCCATGGAAAATCGTTCAGCGGAACCTCTATTGTTGAAGCTATTAAAAGAAGCGGCTGAAGAAGGACTTAT TAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGAAGAAGGCCTGGATGATCTTGCTCTTGATATCCCATCCGCCA AAGCCTTGTTTCAGTCACTTGTCCCCAAGGCAATATCTGAAGGGTGGCTTGATGCTTCATTTACCGATTCTGCTGGTGAA GATGGGGACATCCAAGTTGAAGATGAGAAGTTGAGGAAGTACAAAGAGGAAATTGTATCTATAATTCATGAGTATTTTCT CTCTGATGACATTCCTGAACTCATTAGAAGTCTAGAAGATCTTGGAGCACCTGAGTATAACCCAATATTTTTGAAGAAGC TTATAACTCTTGCTATGGATCGAAAGAACAGAGAAAAGGAAATGGCATCTGTCCTGTTATCTGCTCTTCATATAGAGATA TTCTCAACAGAGGATATAGTCAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGACACAGCACTGGATATTTTGGATGC TTCAAATGAGCTTGCTCTTTTTCTAGCTCGGGCTGTGATTGATGATGTTCTTGCCCCATTGAATTTGGAAGAAATTGGCA GCAGGTTAACCCCAAAATGCAGTGGAAGTGAAACTGTGCGCATGGCTCGGACTCTGGTTTCTGCTCGCCATGCTGGTGAA AGGCTTTTGAGGTGCTGGGGTGGGGGAACTGGATGGGCCGTGGAGGATGCTAAGGACAAGATCATGAAGCTCCTGGAGGA GTATGAAAGCAGTGGGGTCGTGAGCGAAGCATGCCAGTGTATTCGTGACCTGGGAATGTCTTTCTTCAACCATGAGGTAG TGAAGAAAGCTTTGGTTATGGCCATGGAGAAGCAGAATGACAGGATGCTAGATCTGCTGCAGGAGTGCTTCAGTGAAGGA CTGATCACCATCAACCAGATGACCAAAGGGTTCACCCGTGTTAAGGATAGTCTTGATGATCTGGCTCTGGACATTCCAAA TGCAAAGGAAAAATTTGGCTTCTATGTGGAGCAGGCTCAAGCAAAGGGCTGGCTTCTACCATCATTTGATTCGTCTACCA CAGATGTCTAA
Protein sequence (LotjaGi4g1v0225400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPE SSKGAQVIQTAEKSYLSAPHHAELVERRWGGTTHITVEEVKKKIADLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRA LVLAMENRSAEPLLLKLLKEAAEEGLISSSQMVKGFSRLEEGLDDLALDIPSAKALFQSLVPKAISEGWLDASFTDSAGE DGDIQVEDEKLRKYKEEIVSIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEI FSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLTPKCSGSETVRMARTLVSARHAGE RLLRCWGGGTGWAVEDAKDKIMKLLEEYESSGVVSEACQCIRDLGMSFFNHEVVKKALVMAMEKQNDRMLDLLQECFSEG LITINQMTKGFTRVKDSLDDLALDIPNAKEKFGFYVEQAQAKGWLLPSFDSSTTDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 534 | 534 | 0.0 | – | |
SUPERFAMILY | 1 | 112 | 112 | 2.01E-25 | ||
Gene3D | 1 | 96 | 96 | 2.4E-24 | ||
PANTHER | 1 | 534 | 534 | 0.0 | ||
Pfam | 1 | 67 | 67 | 4.6E-11 | ||
ProSiteProfiles | 1 | 76 | 76 | 17.297 | ||
SMART | 1 | 67 | 67 | 0.0078 | ||
Gene3D | 106 | 240 | 135 | 2.6E-43 | ||
SUPERFAMILY | 116 | 238 | 123 | 9.21E-36 | ||
ProSiteProfiles | 119 | 240 | 122 | 24.616 | ||
SMART | 120 | 231 | 112 | 3.9E-40 | ||
Pfam | 120 | 231 | 112 | 3.2E-28 | ||
Gene3D | 247 | 395 | 149 | 7.7E-41 | ||
SUPERFAMILY | 252 | 409 | 158 | 6.24E-40 | ||
ProSiteProfiles | 253 | 374 | 122 | 22.345 | ||
SMART | 254 | 365 | 112 | 7.8E-39 | ||
Pfam | 255 | 364 | 110 | 2.8E-25 | ||
Gene3D | 404 | 533 | 130 | 5.5E-43 | ||
SUPERFAMILY | 413 | 530 | 118 | 2.45E-35 | ||
ProSiteProfiles | 416 | 535 | 120 | 23.956 | ||
SMART | 417 | 526 | 110 | 4.6E-35 | ||
Pfam | 418 | 525 | 108 | 9.8E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0225400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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