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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0225400 |
| Transcript ID | LotjaGi4g1v0225400.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Programmed cell death protein 4; TAIR: AT5G63190.1 MA3 domain-containing protein; Swiss-Prot: sp|Q98TX3|PDCD4_CHICK Programmed cell death protein 4; TrEMBL-Plants: tr|A0A151TE45|A0A151TE45_CAJCA Programmed cell death protein 4; Found in the gene: LotjaGi4g1v0225400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53097617..53101188) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGTCGGGCGAGGGGTTTCTGACTGATGGGCAGAGGGAAATACTCAAGATTGCTACTCAAAATGCTGACAATTTGTC TTCGTCGCCGAAATCCCCATCGTCGTTGCTTTCGGAACATCACATAAAGGCCCCTGCTGCTGGTGGTAAGGCGCAAACAG CTGGGATAGCCGTGAGGCATGTGCGCCGGACTCACTCCGGAAAGCTTGTGCGGGTGAAGAAAGGTTAGTTTCATGTCCTT CAGAGTCTTTGTTTTGAATGGATTATGTTATATCTAAATGCTAGATAGACACCTGGTTTGTTTCTCTGTTGTATGTGTAT CCCCTGTTTTGTGATTTACATAGATTATGTCTATGCTTAGTTAGGCTGTTATATCTAAATACTTTAGGCTAATAGGTGAA CTGTGAAAAGGTTAGGATCTTTTGTTTTTGTGGGATTGAGCTGACTGGTTAGATACTAGTTTTTTAACTATTACTTTTCC CGTGCTCTTTATGGTTTTAGTCTTTCGGCTATGGAAATGATTAAATATTTGCGTACTTGTTCTCTCTCTGAAAACTGTTA AGATTTTTTGATGTAATTATGATTAGTGGATTATCCTCTCAATGTTTAAGAATTGATGGATAGAAGTATTGTCCAGACAA GATACCACTTTGGTGGAGGTTTATAATTGATAGTTGATAATTAATACATATATGGTGAATGGTTGTGTTAGTATAAGGTG ATCGATTTGGGTCCTGAACACCTGATGTATCAGAGCTAGCTTCCCATCATTCTCAACGGTGGAGAACTACTTGTTAATTT TAAAGGTGTAGCAAAATGCTTTCTTGCTTCCATGATACTGATCTTATTGATTATAGGCAGACAGGAGTGTGAAACAAGAT TAAAATTTCATTATCTGTTTAAGGGAGAAGAAAAATTACATTTACATTTAGATGTTACTCAATTCTTGTGAAACTGGCCA ACATATTTTACTTTGTTTAATCTCGTAAATGTATTGTGACTTTTATTTTTATTTGGATCATTTCCATTCACAGAAGAGAA CATTAAGCTTTTTGATCTGGTGTTTCATTGTTTTCTTTTCTTTGAATTGCGGGGCTAATTATTGTTGTCCAGCTTGTTAG TTATATTTTTAAACAGCACCGGGATCTTGACCACAAACTATCCAATCAGCTTATAGTATATATACAGATTATAGTAATCT GTTTGGGATGCATAATATGTAAAATGTTTTGACTATCATTAACTAGGTAAAAGGAAACTGGTCTGCATAACTTAATGGTA TAGAATTTAGTTGTTCCGACTGATGGTTTTCTATTTTTTATATTGGGTTGACAAGTATGTTGGTAGTCAGTGTTGTTGAG GTTTCCTTCCTCAGTTAACTCTTGCCATGTCAACATACATAGTTAGAATTTTCCTTTTTTCATACCAGTCTTCATGTGAG ATATCTTTATCTTGTGGTTGCAGATGGTGCTGGTGGCAAGGGTACTTGGGGAAAATTGATTGACACGGATGTTGAATCTC ACTTAGATCGGAATGATCCAAATTATGACAGTGGCGAGGTACTCTTTTCCGTCTTTATTATAGTAGTTTTTTGACATATT TCATATCACTAGTTGCTTGGAACTGTGATATGACGCTTGTTGTAGCAGTAGTAGACTCTTCCTCTTTTTCTTAATAACTG TACTTTTTGCCTGTTTTGTTCCCCCTTTCTCTCCATTTCAAGGCTATGGTGATAAGTACATGACACTTGCCTATTTGCAT GTTCTTGCTAATTTATAGGAACCCTATCAGCTTGTTGGATCTACTATTACTGACCCCTTGGATGAATTCAAGAAAGCAGT GGTATCCATCATAGAGGAATACTTCAGTAATGGAGATGTTGACTTAGCAGCATCTGACCTCAAAGAACTAGGCTCAAGTG AATATTATGCATATTTCATTAAGCGTCTTGTGTCCTTGGCAATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCCGTT CTGCTTTCAGCATTGTATGCTGATGTCATTAGCCCTGCACAGATTAGGGATGGGTTTTTTATGCTGATTGAATCTGCTGA TGATCTTGCAGTAGATATCCTGGATGCAGTTGACATCCTTGCTTTATTCCTTGCACGTGCTGTTGTTGATGACATTCTTC CTCCGGCCTTTCTTGCCAGGGCAAGGAAGGCTCTTCCAGAATCTTCCAAGGGAGCTCAGGTAATTCAAACTGCTGAGAAG AGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAAAGGCGATGGGGTGGTACCACTCACATCACTGTTGAAGAAGT GAAGAAGAAGATTGCTGATTTACTTAGAGAATATGTGGATAGTGGTGACACACTTGAAGCCTGCAGGTGTATTCGTGAAT TGGGGGTTTCATTCTTCCACCATGAGGTTGTGAAGAGGGCTTTGGTACTTGCCATGGAAAATCGTTCAGCGGAACCTCTA TTGTTGAAGCTATTAAAAGAAGCGGCTGAAGAAGGACTTATTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGA AGAAGGCCTGGATGATCTTGCTCTTGATATCCCATCCGCCAAAGCCTTGTTTCAGTCACTTGTCCCCAAGGCAATATCTG AAGGGTGGCTTGATGCTTCATTTACCGATTCTGCTGGTGAAGATGGGGACATCCAAGTTGAAGATGAGAAGTTGAGGAAG TACAAAGAGGAAATTGTATCTATAATTCATGAGTATTTTCTCTCTGATGACATTCCTGAACTCATTAGAAGTCTAGAAGA TCTTGGAGCACCTGAGTATAACCCAATATTTTTGAAGAAGCTTATAACTCTTGCTATGGATCGAAAGAACAGAGAAAAGG AAATGGCATCTGTCCTGTTATCTGCTCTTCATATAGAGATATTCTCAACAGAGGATATAGTCAATGGTTTTGTCATGCTT CTGGAAAGTGCAGAAGACACAGCACTGGATATTTTGGATGCTTCAAATGAGCTTGCTCTTTTTCTAGCTCGGGCTGTGAT TGATGATGTTCTTGCCCCATTGAATTTGGAAGAAATTGGCAGCAGGTTAACCCCAAAATGCAGTGGAAGTGAAACTGTGC GCATGGCTCGGACTCTGGTTTCTGCTCGCCATGCTGGTGAAAGGCTTTTGAGGTGCTGGGGTGGGGGAACTGGATGGGCC GTGGAGGATGCTAAGGACAAGATCATGAAGCTCCTGGAGGAGTATGAAAGCAGTGGGGTCGTGAGCGAAGCATGCCAGTG TATTCGTGACCTGGGAATGTCTTTCTTCAACCATGAGGTAGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGCAGAATG ACAGGATGCTAGATCTGCTGCAGGAGTGCTTCAGTGAAGGACTGATCACCATCAACCAGATGACCAAAGGGTTCACCCGT GTTAAGGATAGTCTTGATGATCTGGCTCTGGACATTCCAAATGCAAAGGAAAAATTTGGCTTCTATGTGGAGCAGGCTCA AGCAAAGGGCTGGCTTCTACCATCATTTGATTCGTCTACCACAGATGTCTAA
CDS sequence (LotjaGi4g1v0225400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGGGCGAGGGGTTTCTGACTGATGGGCAGAGGGAAATACTCAAGATTGCTACTCAAAATGCTGACAATTTGTC TTCGTCGCCGAAATCCCCATCGTCGTTGCTTTCGGAACATCACATAAAGGCCCCTGCTGCTGGTGGTAAGGCGCAAACAG CTGGGATAGCCGTGAGGCATGTGCGCCGGACTCACTCCGGAAAGCTTGTGCGGGTGGTTGCAGATGGTGCTGGTGGCAAG GGTACTTGGGGAAAATTGATTGACACGGATGTTGAATCTCACTTAGATCGGAATGATCCAAATTATGACAGTGGCGAGGA ACCCTATCAGCTTGTTGGATCTACTATTACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAAT ACTTCAGTAATGGAGATGTTGACTTAGCAGCATCTGACCTCAAAGAACTAGGCTCAAGTGAATATTATGCATATTTCATT AAGCGTCTTGTGTCCTTGGCAATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCCGTTCTGCTTTCAGCATTGTATGC TGATGTCATTAGCCCTGCACAGATTAGGGATGGGTTTTTTATGCTGATTGAATCTGCTGATGATCTTGCAGTAGATATCC TGGATGCAGTTGACATCCTTGCTTTATTCCTTGCACGTGCTGTTGTTGATGACATTCTTCCTCCGGCCTTTCTTGCCAGG GCAAGGAAGGCTCTTCCAGAATCTTCCAAGGGAGCTCAGGTAATTCAAACTGCTGAGAAGAGTTATCTCTCAGCTCCACA CCATGCAGAACTTGTGGAAAGGCGATGGGGTGGTACCACTCACATCACTGTTGAAGAAGTGAAGAAGAAGATTGCTGATT TACTTAGAGAATATGTGGATAGTGGTGACACACTTGAAGCCTGCAGGTGTATTCGTGAATTGGGGGTTTCATTCTTCCAC CATGAGGTTGTGAAGAGGGCTTTGGTACTTGCCATGGAAAATCGTTCAGCGGAACCTCTATTGTTGAAGCTATTAAAAGA AGCGGCTGAAGAAGGACTTATTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGAAGAAGGCCTGGATGATCTTG CTCTTGATATCCCATCCGCCAAAGCCTTGTTTCAGTCACTTGTCCCCAAGGCAATATCTGAAGGGTGGCTTGATGCTTCA TTTACCGATTCTGCTGGTGAAGATGGGGACATCCAAGTTGAAGATGAGAAGTTGAGGAAGTACAAAGAGGAAATTGTATC TATAATTCATGAGTATTTTCTCTCTGATGACATTCCTGAACTCATTAGAAGTCTAGAAGATCTTGGAGCACCTGAGTATA ACCCAATATTTTTGAAGAAGCTTATAACTCTTGCTATGGATCGAAAGAACAGAGAAAAGGAAATGGCATCTGTCCTGTTA TCTGCTCTTCATATAGAGATATTCTCAACAGAGGATATAGTCAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGACAC AGCACTGGATATTTTGGATGCTTCAAATGAGCTTGCTCTTTTTCTAGCTCGGGCTGTGATTGATGATGTTCTTGCCCCAT TGAATTTGGAAGAAATTGGCAGCAGGTTAACCCCAAAATGCAGTGGAAGTGAAACTGTGCGCATGGCTCGGACTCTGGTT TCTGCTCGCCATGCTGGTGAAAGGCTTTTGAGGTGCTGGGGTGGGGGAACTGGATGGGCCGTGGAGGATGCTAAGGACAA GATCATGAAGCTCCTGGAGGAGTATGAAAGCAGTGGGGTCGTGAGCGAAGCATGCCAGTGTATTCGTGACCTGGGAATGT CTTTCTTCAACCATGAGGTAGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGCAGAATGACAGGATGCTAGATCTGCTG CAGGAGTGCTTCAGTGAAGGACTGATCACCATCAACCAGATGACCAAAGGGTTCACCCGTGTTAAGGATAGTCTTGATGA TCTGGCTCTGGACATTCCAAATGCAAAGGAAAAATTTGGCTTCTATGTGGAGCAGGCTCAAGCAAAGGGCTGGCTTCTAC CATCATTTGATTCGTCTACCACAGATGTCTAA
Protein sequence (LotjaGi4g1v0225400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGEGFLTDGQREILKIATQNADNLSSSPKSPSSLLSEHHIKAPAAGGKAQTAGIAVRHVRRTHSGKLVRVVADGAGGK GTWGKLIDTDVESHLDRNDPNYDSGEEPYQLVGSTITDPLDEFKKAVVSIIEEYFSNGDVDLAASDLKELGSSEYYAYFI KRLVSLAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLAR ARKALPESSKGAQVIQTAEKSYLSAPHHAELVERRWGGTTHITVEEVKKKIADLLREYVDSGDTLEACRCIRELGVSFFH HEVVKRALVLAMENRSAEPLLLKLLKEAAEEGLISSSQMVKGFSRLEEGLDDLALDIPSAKALFQSLVPKAISEGWLDAS FTDSAGEDGDIQVEDEKLRKYKEEIVSIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLL SALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLTPKCSGSETVRMARTLV SARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESSGVVSEACQCIRDLGMSFFNHEVVKKALVMAMEKQNDRMLDLL QECFSEGLITINQMTKGFTRVKDSLDDLALDIPNAKEKFGFYVEQAQAKGWLLPSFDSSTTDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 701 | 701 | 0.0 | – | |
| PANTHER | 1 | 701 | 701 | 0.0 | ||
| Gene3D | 112 | 263 | 152 | 8.1E-43 | ||
| SUPERFAMILY | 120 | 279 | 160 | 2.19E-43 | ||
| ProSiteProfiles | 122 | 243 | 122 | 25.827 | ||
| SMART | 123 | 234 | 112 | 3.5E-38 | ||
| Pfam | 123 | 234 | 112 | 2.2E-24 | ||
| Gene3D | 273 | 407 | 135 | 4.1E-43 | ||
| SUPERFAMILY | 283 | 405 | 123 | 9.59E-36 | ||
| ProSiteProfiles | 286 | 407 | 122 | 24.616 | ||
| Pfam | 287 | 398 | 112 | 4.9E-28 | ||
| SMART | 287 | 398 | 112 | 3.9E-40 | ||
| Gene3D | 414 | 562 | 149 | 1.2E-40 | ||
| SUPERFAMILY | 419 | 576 | 158 | 1.51E-39 | ||
| ProSiteProfiles | 420 | 541 | 122 | 22.345 | ||
| SMART | 421 | 532 | 112 | 7.8E-39 | ||
| Pfam | 422 | 531 | 110 | 4.3E-25 | ||
| Gene3D | 571 | 700 | 130 | 8.7E-43 | ||
| SUPERFAMILY | 580 | 697 | 118 | 7.48E-35 | ||
| ProSiteProfiles | 583 | 702 | 120 | 23.956 | ||
| SMART | 584 | 693 | 110 | 4.6E-35 | ||
| Pfam | 585 | 692 | 108 | 1.5E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0225400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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