Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0225400 |
| Transcript ID | LotjaGi4g1v0225400.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Programmed cell death protein 4; TAIR: AT5G63190.1 MA3 domain-containing protein; Swiss-Prot: sp|Q53EL6|PDCD4_HUMAN Programmed cell death protein 4; TrEMBL-Plants: tr|A0A0L9TQG9|A0A0L9TQG9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0225400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53097617..53101188) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGTCGGGCGAGGGGTTTCTGACTGATGGGCAGAGGGAAATACTCAAGATTGCTACTCAAAATGCTGACAATTTGTC TTCGTCGCCGAAATCCCCATCGTCGTTGCTTTCGGAACATCACATAAAGGCCCCTGCTGCTGGTGGTAAGGCGCAAACAG CTGGGATAGCCGTGAGGCATGTGCGCCGGACTCACTCCGGAAAGCTTGTGCGGGTGAAGAAAGGTTAGTTTCATGTCCTT CAGAGTCTTTGTTTTGAATGGATTATGTTATATCTAAATGCTAGATAGACACCTGGTTTGTTTCTCTGTTGTATGTGTAT CCCCTGTTTTGTGATTTACATAGATTATGTCTATGCTTAGTTAGGCTGTTATATCTAAATACTTTAGGCTAATAGGTGAA CTGTGAAAAGGTTAGGATCTTTTGTTTTTGTGGGATTGAGCTGACTGGTTAGATACTAGTTTTTTAACTATTACTTTTCC CGTGCTCTTTATGGTTTTAGTCTTTCGGCTATGGAAATGATTAAATATTTGCGTACTTGTTCTCTCTCTGAAAACTGTTA AGATTTTTTGATGTAATTATGATTAGTGGATTATCCTCTCAATGTTTAAGAATTGATGGATAGAAGTATTGTCCAGACAA GATACCACTTTGGTGGAGGTTTATAATTGATAGTTGATAATTAATACATATATGGTGAATGGTTGTGTTAGTATAAGGTG ATCGATTTGGGTCCTGAACACCTGATGTATCAGAGCTAGCTTCCCATCATTCTCAACGGTGGAGAACTACTTGTTAATTT TAAAGGTGTAGCAAAATGCTTTCTTGCTTCCATGATACTGATCTTATTGATTATAGGCAGACAGGAGTGTGAAACAAGAT TAAAATTTCATTATCTGTTTAAGGGAGAAGAAAAATTACATTTACATTTAGATGTTACTCAATTCTTGTGAAACTGGCCA ACATATTTTACTTTGTTTAATCTCGTAAATGTATTGTGACTTTTATTTTTATTTGGATCATTTCCATTCACAGAAGAGAA CATTAAGCTTTTTGATCTGGTGTTTCATTGTTTTCTTTTCTTTGAATTGCGGGGCTAATTATTGTTGTCCAGCTTGTTAG TTATATTTTTAAACAGCACCGGGATCTTGACCACAAACTATCCAATCAGCTTATAGTATATATACAGATTATAGTAATCT GTTTGGGATGCATAATATGTAAAATGTTTTGACTATCATTAACTAGGTAAAAGGAAACTGGTCTGCATAACTTAATGGTA TAGAATTTAGTTGTTCCGACTGATGGTTTTCTATTTTTTATATTGGGTTGACAAGTATGTTGGTAGTCAGTGTTGTTGAG GTTTCCTTCCTCAGTTAACTCTTGCCATGTCAACATACATAGTTAGAATTTTCCTTTTTTCATACCAGTCTTCATGTGAG ATATCTTTATCTTGTGGTTGCAGATGGTGCTGGTGGCAAGGGTACTTGGGGAAAATTGATTGACACGGATGTTGAATCTC ACTTAGATCGGAATGATCCAAATTATGACAGTGGCGAGGTACTCTTTTCCGTCTTTATTATAGTAGTTTTTTGACATATT TCATATCACTAGTTGCTTGGAACTGTGATATGACGCTTGTTGTAGCAGTAGTAGACTCTTCCTCTTTTTCTTAATAACTG TACTTTTTGCCTGTTTTGTTCCCCCTTTCTCTCCATTTCAAGGCTATGGTGATAAGTACATGACACTTGCCTATTTGCAT GTTCTTGCTAATTTATAGGAACCCTATCAGCTTGTTGGATCTACTATTACTGACCCCTTGGATGAATTCAAGAAAGCAGT GGTATCCATCATAGAGGAATACTTCAGTAATGGAGATGTTGACTTAGCAGCATCTGACCTCAAAGAACTAGGCTCAAGTG AATATTATGCATATTTCATTAAGCGTCTTGTGTCCTTGGCAATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCCGTT CTGCTTTCAGCATTGTATGCTGATGTCATTAGCCCTGCACAGATTAGGGATGGGTTTTTTATGCTGATTGAATCTGCTGA TGATCTTGCAGTAGATATCCTGGATGCAGTTGACATCCTTGCTTTATTCCTTGCACGTGCTGTTGTTGATGACATTCTTC CTCCGGCCTTTCTTGCCAGGGCAAGGAAGGCTCTTCCAGAATCTTCCAAGGGAGCTCAGGTAATTCAAACTGCTGAGAAG AGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAAAGGCGATGGGGTGGTACCACTCACATCACTGTTGAAGAAGT GAAGAAGAAGATTGCTGATTTACTTAGAGAATATGTGGATAGTGGTGACACACTTGAAGCCTGCAGGTGTATTCGTGAAT TGGGGGTTTCATTCTTCCACCATGAGGTTGTGAAGAGGGCTTTGGTACTTGCCATGGAAAATCGTTCAGCGGAACCTCTA TTGTTGAAGCTATTAAAAGAAGCGGCTGAAGAAGGACTTATTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGA AGAAGGCCTGGATGATCTTGCTCTTGATATCCCATCCGCCAAAGCCTTGTTTCAGTCACTTGTCCCCAAGGCAATATCTG AAGGGTGGCTTGATGCTTCATTTACCGATTCTGCTGGTGAAGATGGGGACATCCAAGTTGAAGATGAGAAGTTGAGGAAG TACAAAGAGGAAATTGTATCTATAATTCATGAGTATTTTCTCTCTGATGACATTCCTGAACTCATTAGAAGTCTAGAAGA TCTTGGAGCACCTGAGTATAACCCAATATTTTTGAAGAAGCTTATAACTCTTGCTATGGATCGAAAGAACAGAGAAAAGG AAATGGCATCTGTCCTGTTATCTGCTCTTCATATAGAGATATTCTCAACAGAGGATATAGTCAATGGTTTTGTCATGCTT CTGGAAAGTGCAGAAGACACAGCACTGGATATTTTGGATGCTTCAAATGAGCTTGCTCTTTTTCTAGCTCGGGCTGTGAT TGATGATGTTCTTGCCCCATTGAATTTGGAAGAAATTGGCAGCAGGTTAACCCCAAAATGCAGTGGAAGTGAAACTGTGC GCATGGCTCGGACTCTGGTTTCTGCTCGCCATGCTGGTGAAAGGCTTTTGAGGTGCTGGGGTGGGGGAACTGGATGGGCC GTGGAGGATGCTAAGGACAAGATCATGAAGCTCCTGGAGGAGTATGAAAGCAGTGGGGTCGTGAGCGAAGCATGCCAGTG TATTCGTGACCTGGGAATGTCTTTCTTCAACCATGAGGTAGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGCAGAATG ACAGGATGCTAGATCTGCTGCAGGAGTGCTTCAGTGAAGGACTGATCACCATCAACCAGATGACCAAAGGGTTCACCCGT GTTAAGGATAGTCTTGATGATCTGGCTCTGGACATTCCAAATGCAAAGGAAAAATTTGGCTTCTATGTGGAGCAGGCTCA AGCAAAGGGCTGGCTTCTACCATCATTTGATTCGTCTACCACAGATGTCTAA
CDS sequence (LotjaGi4g1v0225400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCCGTTCTGCTTTCAGCATTGTATGCTGATGTCATTAGCCCTGCACA GATTAGGGATGGGTTTTTTATGCTGATTGAATCTGCTGATGATCTTGCAGTAGATATCCTGGATGCAGTTGACATCCTTG CTTTATTCCTTGCACGTGCTGTTGTTGATGACATTCTTCCTCCGGCCTTTCTTGCCAGGGCAAGGAAGGCTCTTCCAGAA TCTTCCAAGGGAGCTCAGGTAATTCAAACTGCTGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAAAG GCGATGGGGTGGTACCACTCACATCACTGTTGAAGAAGTGAAGAAGAAGATTGCTGATTTACTTAGAGAATATGTGGATA GTGGTGACACACTTGAAGCCTGCAGGTGTATTCGTGAATTGGGGGTTTCATTCTTCCACCATGAGGTTGTGAAGAGGGCT TTGGTACTTGCCATGGAAAATCGTTCAGCGGAACCTCTATTGTTGAAGCTATTAAAAGAAGCGGCTGAAGAAGGACTTAT TAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGTTTGGAAGAAGGCCTGGATGATCTTGCTCTTGATATCCCATCCGCCA AAGCCTTGTTTCAGTCACTTGTCCCCAAGGCAATATCTGAAGGGTGGCTTGATGCTTCATTTACCGATTCTGCTGGTGAA GATGGGGACATCCAAGTTGAAGATGAGAAGTTGAGGAAGTACAAAGAGGAAATTGTATCTATAATTCATGAGTATTTTCT CTCTGATGACATTCCTGAACTCATTAGAAGTCTAGAAGATCTTGGAGCACCTGAGTATAACCCAATATTTTTGAAGAAGC TTATAACTCTTGCTATGGATCGAAAGAACAGAGAAAAGGAAATGGCATCTGTCCTGTTATCTGCTCTTCATATAGAGATA TTCTCAACAGAGGATATAGTCAATGGTTTTGTCATGCTTCTGGAAAGTGCAGAAGACACAGCACTGGATATTTTGGATGC TTCAAATGAGCTTGCTCTTTTTCTAGCTCGGGCTGTGATTGATGATGTTCTTGCCCCATTGAATTTGGAAGAAATTGGCA GCAGGTTAACCCCAAAATGCAGTGGAAGTGAAACTGTGCGCATGGCTCGGACTCTGGTTTCTGCTCGCCATGCTGGTGAA AGGCTTTTGAGGTGCTGGGGTGGGGGAACTGGATGGGCCGTGGAGGATGCTAAGGACAAGATCATGAAGCTCCTGGAGGA GTATGAAAGCAGTGGGGTCGTGAGCGAAGCATGCCAGTGTATTCGTGACCTGGGAATGTCTTTCTTCAACCATGAGGTAG TGAAGAAAGCTTTGGTTATGGCCATGGAGAAGCAGAATGACAGGATGCTAGATCTGCTGCAGGAGTGCTTCAGTGAAGGA CTGATCACCATCAACCAGATGACCAAAGGGTTCACCCGTGTTAAGGATAGTCTTGATGATCTGGCTCTGGACATTCCAAA TGCAAAGGAAAAATTTGGCTTCTATGTGGAGCAGGCTCAAGCAAAGGGCTGGCTTCTACCATCATTTGATTCGTCTACCA CAGATGTCTAA
Protein sequence (LotjaGi4g1v0225400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRHDKEKEMASVLLSALYADVISPAQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPE SSKGAQVIQTAEKSYLSAPHHAELVERRWGGTTHITVEEVKKKIADLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRA LVLAMENRSAEPLLLKLLKEAAEEGLISSSQMVKGFSRLEEGLDDLALDIPSAKALFQSLVPKAISEGWLDASFTDSAGE DGDIQVEDEKLRKYKEEIVSIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEI FSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLTPKCSGSETVRMARTLVSARHAGE RLLRCWGGGTGWAVEDAKDKIMKLLEEYESSGVVSEACQCIRDLGMSFFNHEVVKKALVMAMEKQNDRMLDLLQECFSEG LITINQMTKGFTRVKDSLDDLALDIPNAKEKFGFYVEQAQAKGWLLPSFDSSTTDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 534 | 534 | 0.0 | – | |
| SUPERFAMILY | 1 | 112 | 112 | 2.01E-25 | ||
| Gene3D | 1 | 96 | 96 | 2.4E-24 | ||
| PANTHER | 1 | 534 | 534 | 0.0 | ||
| Pfam | 1 | 67 | 67 | 4.6E-11 | ||
| ProSiteProfiles | 1 | 76 | 76 | 17.297 | ||
| SMART | 1 | 67 | 67 | 0.0078 | ||
| Gene3D | 106 | 240 | 135 | 2.6E-43 | ||
| SUPERFAMILY | 116 | 238 | 123 | 9.21E-36 | ||
| ProSiteProfiles | 119 | 240 | 122 | 24.616 | ||
| SMART | 120 | 231 | 112 | 3.9E-40 | ||
| Pfam | 120 | 231 | 112 | 3.2E-28 | ||
| Gene3D | 247 | 395 | 149 | 7.7E-41 | ||
| SUPERFAMILY | 252 | 409 | 158 | 6.24E-40 | ||
| ProSiteProfiles | 253 | 374 | 122 | 22.345 | ||
| SMART | 254 | 365 | 112 | 7.8E-39 | ||
| Pfam | 255 | 364 | 110 | 2.8E-25 | ||
| Gene3D | 404 | 533 | 130 | 5.5E-43 | ||
| SUPERFAMILY | 413 | 530 | 118 | 2.45E-35 | ||
| ProSiteProfiles | 416 | 535 | 120 | 23.956 | ||
| SMART | 417 | 526 | 110 | 4.6E-35 | ||
| Pfam | 418 | 525 | 108 | 9.8E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0225400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…