Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0225800 |
| Transcript ID | LotjaGi4g1v0225800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (Reverse transcriptase); TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|F4NCF7|F4NCF7_BETVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0225800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53380796..53383030) extracted from Lotus japonicus Gifu genome v1.2.
CTTTAATTGAGAAGATGAGGGTAAAGTTGATTCCATGGCGCTCAAAATTTCTATCTCTAAGTGGGAGGTTGGTGCTCCTT AAAAGCATAATTGCAGCGGTTCCCGTATATTATATGTCGATTTTCAAAGCACCAGTGGGTGTGGTTGATCAATTTGAGAA ACTGATGCGATCCTTTTTATGGGGCAATAAGGAGGGCCAAAGGAAAGTGAGCTGGGTTGCATGGGAGCAAATATGCAAAG ACCAACAATACGGAGGGCTTGGGCTCGGGTTCCTGGGATGGAAAAATAGAGCACTTCTCCTCAAATGGGCTTGGAGGTTT GGAATAGAAAAGAATGCATTGTGGAGGAAAGTGGTTTGTGCTAAATATGGGTGGGATAGTAGGTGCTTTCTACTGCACTT GGTGGCTGATCGATACAATGGGTGTTCGTATGTCTGGCAAGATATCTTGAAGATGTTATTTGAGGATTCGATCTTGGCCA AAGCTTTTAGGAATCAGCTTCGATGTAAAGTGGGGAGAGGAAATGAGGTAAGATTCTGGCTTGATCCTTGGGTTAATCAA GTCCCACTTCATATTTCTTTCCCTCGGATCTATGCTTTGGCAATCAATAAGGATGCTTACATCAATGAGATGGGATCCTA TTTGGGCAGATTATGGACATGGTCTATTGAACTCAGAAGGCAATGCTTGGGGTGGGAAACAGATGAAGAAACATGCTTAC TCAATACCATAAACTCGTATATACCAATCAAAGGTGAAGATGGTATTTTTTGGCAAGGGGATCAGCGGGGTTGTTTCTCG GTTAAAGCCCTTTGCAGCCTCGCAGAACAGAACTCCTTAAACTGCAATGCATTTATCATACCAAATTGTGTACGCAAGGT CATACCACCCAAAGTTGCTGTCTTTGTTTGGCAGGCATCCCTTGACAGAATTGCAGTGCGAGAGAACCTAGTGAAACGGG GGTTGTTAATTGAAAATCAGGGGAGATGCAGCGTTTGTGGGCTGGTTGTGGAGACTACAAACCACTTACTGTTACATTGC AAGCAAATCTGGAATCTATGGTGTGGTATAATGAACAGAGAAGGAATCCAGTGGTGCTGCCCTGAACAGTTGAAAAGTGT GATGATTGAATGGCCTGAACTGCGTGACAAATCAGATAGTGCTCTCTGGAAAATCATTCCATATGCCATGACATGGTCAG TATGGTTGGGCAGAAATGAGCTGATATTTAACAATAAACCCTTTATAATGGAAGACATTTGGGATTTACATATTTCTCGC ATATCTTGGTGGGTGAAAGCCTATTGGAAAGACAGTCCTTACTCAGCTCATGACTTCTTAATGAATTTTGAAAGTATAAG ACTCAAAGCAGGGACTGCTAGAAACCGAAAGAATGAATGGGTTCCCCCTCCGGCTGGTGTTCTGAAATTTAATGTTGACG GATCAGCTCAAGGAGCCCCAGGAAAAAGTGGAGTAGGGGGGGTGCTCAGGAATTCAAGAAGGCAAATAGTTGGGGTTTTT TCAAAAGCGACTGGAGTGTTATGGGCTTATGAGGCAGAGGTTAAGGCTATACTTCAAGCTCTGATTTTCTGCCAACATTA CCAGCTGAGACATATTCAGATTGAAAGTGATTCATCAATAGCAGTGGGCTGGACTTTAAACCAGATGAATAGACCCTGGA AATTGATTCAGGACCTTAATTTAATTGATGCTCTTTGTGTGGAGGTGGATTGCCTAGGTATCAGCCACATTTATCGGGAA TCAAACCCGTTAGCTGACTATTTAGCTAAGTCTGGCTGTCAAAGAGAACACCAAATCTGGTCTTATTCTGAAGTTCCCAG TTCAATCACAAGGAGTGTGGGCAGTGGTGATTAACTCAGATTTTATCAAGGCCATCAATATACTTTTGGTCTCGCTCACT TCCTTGGCCACTGTTAAGAAAATTGTTTTACTTTGTTTCCTTCTCCATGGGGCCCGTGAGTTTTTGTTCCTTCTCTAAGT TGGTGCTGCAGCTATTTGGTTGGAGTTCTTGGCTGGTTTCATTTGCAATATTGGTGCACTCACCTTATTGGTGGTTGCCT TGGTCTTGCTCTTTTCTTTTCTAAGTAGTTGTTGTATTAGTTAGTTTGTTTCTAGCTCTCTAGTCTTTTGATCTTGTTCT TTTTTTCTTTCTGTTTTTGCCTTGTATCTTCCTTTGTTGCTTTTCTCACTTGAGAGAGTTTGTTCTCAAGATCAC
CDS sequence (LotjaGi4g1v0225800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGTAAAGTTGATTCCATGGCGCTCAAAATTTCTATCTCTAAGTGGGAGGTTGGTGCTCCTTAAAAGCATAATTGC AGCGGTTCCCGTATATTATATGTCGATTTTCAAAGCACCAGTGGGTGTGGTTGATCAATTTGAGAAACTGATGCGATCCT TTTTATGGGGCAATAAGGAGGGCCAAAGGAAAGTGAGCTGGGTTGCATGGGAGCAAATATGCAAAGACCAACAATACGGA GGGCTTGGGCTCGGGTTCCTGGGATGGAAAAATAGAGCACTTCTCCTCAAATGGGCTTGGAGGTTTGGAATAGAAAAGAA TGCATTGTGGAGGAAAGTGGTTTGTGCTAAATATGGGTGGGATAGTAGGTGCTTTCTACTGCACTTGGTGGCTGATCGAT ACAATGGGTGTTCGTATGTCTGGCAAGATATCTTGAAGATGTTATTTGAGGATTCGATCTTGGCCAAAGCTTTTAGGAAT CAGCTTCGATGTAAAGTGGGGAGAGGAAATGAGGTAAGATTCTGGCTTGATCCTTGGGTTAATCAAGTCCCACTTCATAT TTCTTTCCCTCGGATCTATGCTTTGGCAATCAATAAGGATGCTTACATCAATGAGATGGGATCCTATTTGGGCAGATTAT GGACATGGTCTATTGAACTCAGAAGGCAATGCTTGGGGTGGGAAACAGATGAAGAAACATGCTTACTCAATACCATAAAC TCGTATATACCAATCAAAGGTGAAGATGGTATTTTTTGGCAAGGGGATCAGCGGGGTTGTTTCTCGGTTAAAGCCCTTTG CAGCCTCGCAGAACAGAACTCCTTAAACTGCAATGCATTTATCATACCAAATTGTGTACGCAAGGTCATACCACCCAAAG TTGCTGTCTTTGTTTGGCAGGCATCCCTTGACAGAATTGCAGTGCGAGAGAACCTAGTGAAACGGGGGTTGTTAATTGAA AATCAGGGGAGATGCAGCGTTTGTGGGCTGGTTGTGGAGACTACAAACCACTTACTGTTACATTGCAAGCAAATCTGGAA TCTATGGTGTGGTATAATGAACAGAGAAGGAATCCAGTGGTGCTGCCCTGAACAGTTGAAAAGTGTGATGATTGAATGGC CTGAACTGCGTGACAAATCAGATAGTGCTCTCTGGAAAATCATTCCATATGCCATGACATGGTCAGTATGGTTGGGCAGA AATGAGCTGATATTTAACAATAAACCCTTTATAATGGAAGACATTTGGGATTTACATATTTCTCGCATATCTTGGTGGGT GAAAGCCTATTGGAAAGACAGTCCTTACTCAGCTCATGACTTCTTAATGAATTTTGAAAGTATAAGACTCAAAGCAGGGA CTGCTAGAAACCGAAAGAATGAATGGGTTCCCCCTCCGGCTGGTGTTCTGAAATTTAATGTTGACGGATCAGCTCAAGGA GCCCCAGGAAAAAGTGGAGTAGGGGGGGTGCTCAGGAATTCAAGAAGGCAAATAGTTGGGGTTTTTTCAAAAGCGACTGG AGTGTTATGGGCTTATGAGGCAGAGGTTAAGGCTATACTTCAAGCTCTGATTTTCTGCCAACATTACCAGCTGAGACATA TTCAGATTGAAAGTGATTCATCAATAGCAGTGGGCTGGACTTTAAACCAGATGAATAGACCCTGGAAATTGATTCAGGAC CTTAATTTAATTGATGCTCTTTGTGTGGAGGTGGATTGCCTAGGTATCAGCCACATTTATCGGGAATCAAACCCGTTAGC TGACTATTTAGCTAAGTCTGGCTGTCAAAGAGAACACCAAATCTGGTCTTATTCTGAAGTTCCCAGTTCAATCACAAGGA GTGTGGGCAGTGGTGATTAA
Protein sequence (LotjaGi4g1v0225800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRVKLIPWRSKFLSLSGRLVLLKSIIAAVPVYYMSIFKAPVGVVDQFEKLMRSFLWGNKEGQRKVSWVAWEQICKDQQYG GLGLGFLGWKNRALLLKWAWRFGIEKNALWRKVVCAKYGWDSRCFLLHLVADRYNGCSYVWQDILKMLFEDSILAKAFRN QLRCKVGRGNEVRFWLDPWVNQVPLHISFPRIYALAINKDAYINEMGSYLGRLWTWSIELRRQCLGWETDEETCLLNTIN SYIPIKGEDGIFWQGDQRGCFSVKALCSLAEQNSLNCNAFIIPNCVRKVIPPKVAVFVWQASLDRIAVRENLVKRGLLIE NQGRCSVCGLVVETTNHLLLHCKQIWNLWCGIMNREGIQWCCPEQLKSVMIEWPELRDKSDSALWKIIPYAMTWSVWLGR NELIFNNKPFIMEDIWDLHISRISWWVKAYWKDSPYSAHDFLMNFESIRLKAGTARNRKNEWVPPPAGVLKFNVDGSAQG APGKSGVGGVLRNSRRQIVGVFSKATGVLWAYEAEVKAILQALIFCQHYQLRHIQIESDSSIAVGWTLNQMNRPWKLIQD LNLIDALCVEVDCLGISHIYRESNPLADYLAKSGCQREHQIWSYSEVPSSITRSVGSGD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 7 | 610 | 604 | 1.4E-65 | – | |
| Phobius | 12 | 22 | 11 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 619 | 592 | - | – | |
| Pfam | 261 | 349 | 89 | 3.0E-14 | ||
| ProSiteProfiles | 466 | 596 | 131 | 11.013 | ||
| Gene3D | 468 | 596 | 129 | 1.6E-20 | ||
| SUPERFAMILY | 469 | 597 | 129 | 3.16E-16 | ||
| Pfam | 473 | 593 | 121 | 6.0E-17 | ||
| CDD | 473 | 592 | 120 | 4.12518E-23 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi4g1v0225800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…