Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0231100 |
| Transcript ID | LotjaGi4g1v0231100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase, putative (DUF239); TAIR: AT5G50150.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|Q9U297|KDM4_CAEEL Lysine-specific demethylase 4; TrEMBL-Plants: tr|V7CEV7|V7CEV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0231100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54221667..54226057) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAAGTAAGACATGGAGAAAGCAACCCCACCTATATGTGGGGCCAGAGTCTATTTTATGTGCTGGTACTATAGTTTTT TCATGGTGTGGGGAGCATAATATTAAATCAAAACCATTATATTCTCTCTCACACACAGTTTCTCTCTATAGTCAGGACCA GTTGGATGAGTTGTTTATAATTTGAAAAGTGTGAAGGCAGCCAACAAACTTGGGGGGTTTCTTCTTGTTTTAGTTCTTCT GTTTTGTATGGACATGAAGGAACATTCAGTTTCCTGGACAAAACACATGAAAGACTCATTTTTTGCAGCTCCCCACACAA CAAGACAACACCAATGCATACAAACAACCTCACAAAATCATTCCCTGAAATTGGATTCTTCTACTTCCCAAAATACTCTA CTACTACTACCTATGATACCTTCTGCCTTTGTTGTTTTCTTTCTGCTTGTTACTTCAATTAGTCCAGTTTTGTCACACCC CATTGCCTCAGATTCAGTACTCTCTCACTCCAATGCTACCCAAACTTTTAGGCCAGGTGTGGAGTTGCATAAGTTGAGGA GAATCAGAGCTCTACTGAGGAAGATTAACAAGCCTGCAATCAAGACAATTAAGGCATTTTCACCTGCTTGCTTTAGAAGC TGCTATAGACAATGACAGTGTGTGCATTTTTTATTTTTCTTCTTCTTGACATGGTTTTTTGTTCTTCTTCTTGCAGAGTC CAGATGGGGATTTGATAGATTGTGTTTTATCTCATCAGCAACCAGCTTTTGACCATCCTGAACTCAAAGGAAAAAGACCA TTGGTAGGTAATTTCATCCAACTCTTATGCCAAAAAAAATGAATTTTGCTTTGAATCTCAGATACCCAAATGCCACAGAA TTGTTGAGGCATTGTAGGCATGATGTAGGAATTTATTTTAGGGATTGAATTTTATTTAAGAGACAGAGAGAGTAAGAGGC TTAAGTTTTACAGGATCCACCAGAAAGGCCTAAGAGAAAGAGCAACTTCACCAATGGAGAATCAGTAACAGAAAGTATTC AGCTTTGGACTGTTTCTGGTGAAGTGTGTCCAGAAGGAACTGTTCCAATCAGGAGAACAACAGAGCAGGATTTTCTAAGA GCAAGCTCTATCAGAAGATTTGGAAGAAAACCAAGAGGTGTACGGAGAGATTCATCTGGCACTGGTCATGAGGTTAGTTA GTTGAAGTTAAAATTTTAAAAAGTGAACTTCCTTTTCCAATTCAATCTTCTCTGCTATTGTTCCATTTCTCATTCATGAT ACATTCATTTGAAACCCTCGCCAATGCTTGCATAGCCGGCCCGGTCGCAAGCGCGGTAAAGGATGAAGGTTGTGTTTGGC CTTCCGCAGCCAACATAAAACTAGCTGATATCTTCAATATTCAATACATTCATTTGAAAGGAAAACATCTTCTCTTGTTT TATCATCATTCTGTTTTCAGTTTCATTTTATTCCTTGCCAGAAGAACAGAACAACCCTGCTTTTCCTTATGCATAAAAGT TCAATAGAATTTACAAAAAACAAAAAAACCATAAGACATTGAAGGGACACCACTTGTAAAAGTTTGCCTCCTGTTTATTC TGAAAAGTAACATAAAAAAGCTTAAGAAACACTATAGGCATAAACATATTTTGCATAATTTTGACTCACAATTTTGAACA TGTTATTGCAGCATGCAGTGGTTTTTGTTAATGGAGATCAATATTATGGAGCCAAAGCAAGCATAAACGTGTGGACACCC ACAGTAACTGATCAATACGAATTCAGCTTGTCTCAGATATGGGTTATTGCTGGATCATTTGGTAATGATCTGAATACACT AGAAGCTGGATGGCAGGCATGTACACTCTTTTCTAAAGATTATCCTAATTTGGCAATATTTCTCGTTTTTATGTTCATAA TCATCCAGTTTTGTAGTGAGTGTAATCGCATGTTTGTAAATTCTACTACAATTGACTCGAAAGCAAGAGTCAATTAGGTG GAGAAGTTCTCTGAATAGCTTCTGGGTTTCAGGAACGAGAAGCTAATCCAAACATGTTATAAATAAATTGATGAAGACTC TCTAAGGAATGCATTTCTCTTAGCATGTTTGAATCAGCTTTTATTTCCCCAGAATAAATTTTGGCACCCAGAAACTACTC ATAGAACTTCTCCCAGAATTGATTCTGCATTTGATTTGTTGGTTTATAGTCCATGAGCTTATAGGCATATTTTCTTACTT CAGGTTAGTCCTGAGCTATATGGGGACAACTATCCTAGGTTCTTCACTTATTGGACTGTAAGTATTGCATGCCTCTTTTC TCTTCCTTTTACCAAGTTTGGATCGGCTTATTTTTATGCGAATCAATTCTGGTGCTCAGAAGTTACTTATAGATGCTTCT TTCTAGAATTGATTTGGGCTTTAAAATCAATTGCAAACTTTTTTTCAAACATGCACTTTGTTTCCCCAGCTCCCTTGTTT CTTTCACACACCTTAAAGATATTTCCTATTTCGTAGACTGATGCATATCAAGCCACTGGATGCTACAACTTATTATGTTC AGGATTTGTCCAAACAAACAACAAGATAGCAATAGGAGCTGCAATCTCCCCAAGATCTGCTTATAATGGCAGACAATTTG ATATTGGCATAATGGTTTGGAAGGTGAGTAACTTTTTATTTTTCCTCATCCAAATCAACATTGTAAGTCAACCCAAAAAA AGGCACCAATTAAGGAGAAAATAAGGTCCTTTACTAAACACAAAGCTTAATAGTACTTTGGAAGGTGGTTTGCTGTTAAT TGAAGCTTTTGTGCTTTTCAAACCTTTATTTGCTATATATGACAGCTTATAAAAAAGAGCTAAACAGGCATGATCCAATC AAGAATTGAAAAAAAAAAAAAAGAATTGCATCTAATTTAAGTGAAGCAATAATTCATATACTTTTTTTTATCCTTTTGTT TTGAAATTTTCTGCATGTTATTGTTATTCAAATTGGAAGATTCCCTTGCTTTCCATGTACCAGTGTCCTTCATGGGGGGG TCTAGGACTGTTCCTATCTTTTCCTTTATTAAAGTAGTGTTTCACAGCTCCCTCTCTGCTTTTTGCTTTGGTTTTTCTGA AACTGGCTTCTCAAGCCTAAATAATTAACAGCCAAACATGCCCTGCTGCTTCCTCTTCCCATTTATATTTTCCTCATATT ATCTTAATCATGGCAAAAAGACCGTTTATAAACAAGTAATTGCTTAACCCAGAAGGGAAAACTCTCTTTATACAATAATG CCAGAACATTAGTGTAAGTTTAGACACACTTGGTTACATTTATGTTTGTAAGTTTAGACACATTTGTACACTCATAATAG AATTGATTCAGAAAAAAATAAGTAGATTTAAACATGCTACGAATCAAGTAATTTTAAATGGGGCAATCACTCTCAGGAAA AGAAACTTTTTCCTTAATAGAATAATAGAATAGTATACGAATATTGTATTTGCCCGTGCTAAAAATTTTACACTACCTCT CCCAATTAGTCATTGTTAATTTTGCTTGATATGTTAAATTTTCGTCACTCTTACCCATTTTTTCTAGTCTTGTCCCTGAT GAAAACTCTAAATGTTTAGGATCCAAAGCATGGACATTGGTGGCTGGAGTTTGGATCAGGACTGTTAGTTGGGTATTGGC CAGCATTCTTGTTCAGTCACTTGAGAAGCCATGCAAGCATGGTTCAATTTGGAGGAGAAATTGTGAATTCCCGTTCAAGG GGTTACCACACTGGCACCCAAATGGGCAGTGGCCATTTTGCTGAAGAAGGTTTTAGAAAAGCAGCTTATTTTAGAAACCT TCAAGTGGTTGATTGGGACAATAACTTGCTTCCTCTCTCAAACATGCACCAATTGGCTGATCATTCCAATTGCTATGACA TAAGAGAGGGAAGAAACAATGTTTGGGGGACTTACTTTTACTATGGAGGTCCTGGAAGAAATGTGAGATGTCCATGAAGA AAATGCTTTTTTGTCATAAATATATATATTCTTTTTTTTTCTTCTCCCACTTTCTCTTTTCTTTTGGGGATTTTGCTCTC ACTACATGGTTTGGCTGTATTTGTTAATTTTGCCATAGTTTTTATTTTTTGCTAACATGTTATTAGAGACAGTCTGTTTT GTTATTAGGGATGACATGAATGTGCAAAAAATATGTTGTTAATTTATAGTAATATTGAATCAAGAGGTGCTATGTTTGTT CCTATAACTTTCCCTGTTAAAATTCAAAGAAACTTGGATTTGTGGATAATGATGTTGACTTGACCACCAATAAACTAGTA CTCCATTTAATGTCTTGCCAAGATGGAACTATAACTACTAATAAATGTGGAGTAATCATGTTGGAATTCAT
CDS sequence (LotjaGi4g1v0231100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTGGAAGGATCCAAAGCATGGACATTGGTGGCTGGAGTTTGGATCAGGACTGTTAGTTGGGTATTGGCCAGCATT CTTGTTCAGTCACTTGAGAAGCCATGCAAGCATGGTTCAATTTGGAGGAGAAATTGTGAATTCCCGTTCAAGGGGTTACC ACACTGGCACCCAAATGGGCAGTGGCCATTTTGCTGAAGAAGGTTTTAGAAAAGCAGCTTATTTTAGAAACCTTCAAGTG GTTGATTGGGACAATAACTTGCTTCCTCTCTCAAACATGCACCAATTGGCTGATCATTCCAATTGCTATGACATAAGAGA GGGAAGAAACAATGTTTGGGGGACTTACTTTTACTATGGAGGTCCTGGAAGAAATGTGAGATGTCCATGA
Protein sequence (LotjaGi4g1v0231100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVWKDPKHGHWWLEFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSRGYHTGTQMGSGHFAEEGFRKAAYFRNLQV VDWDNNLLPLSNMHQLADHSNCYDIREGRNNVWGTYFYYGGPGRNVRCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 129 | 129 | 5.0E-88 | – | |
| PANTHER | 1 | 129 | 129 | 5.0E-88 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Pfam | 2 | 122 | 121 | 9.8E-42 | ||
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| Phobius | 33 | 129 | 97 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0231100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…