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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0231100 |
| Transcript ID | LotjaGi4g1v0231100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase, putative (DUF239); TAIR: AT5G50150.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|Q9U297|KDM4_CAEEL Lysine-specific demethylase 4; TrEMBL-Plants: tr|V7CEV7|V7CEV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0231100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54222061..54225639) extracted from Lotus japonicus Gifu genome v1.2.
CCTTCTGCCTTTGTTGTTTTCTTTCTGCTTGTTACTTCAATTAGTCCAGTTTTGTCACACCCCATTGCCTCAGATTCAGT ACTCTCTCACTCCAATGCTACCCAAACTTTTAGGCCAGGTGTGGAGTTGCATAAGTTGAGGAGAATCAGAGCTCTACTGA GGAAGATTAACAAGCCTGCAATCAAGACAATTAAGGCATTTTCACCTGCTTGCTTTAGAAGCTGCTATAGACAATGACAG TGTGTGCATTTTTTATTTTTCTTCTTCTTGACATGGTTTTTTGTTCTTCTTCTTGCAGAGTCCAGATGGGGATTTGATAG ATTGTGTTTTATCTCATCAGCAACCAGCTTTTGACCATCCTGAACTCAAAGGAAAAAGACCATTGGTAGGTAATTTCATC CAACTCTTATGCCAAAAAAAATGAATTTTGCTTTGAATCTCAGATACCCAAATGCCACAGAATTGTTGAGGCATTGTAGG CATGATGTAGGAATTTATTTTAGGGATTGAATTTTATTTAAGAGACAGAGAGAGTAAGAGGCTTAAGTTTTACAGGATCC ACCAGAAAGGCCTAAGAGAAAGAGCAACTTCACCAATGGAGAATCAGTAACAGAAAGTATTCAGCTTTGGACTGTTTCTG GTGAAGTGTGTCCAGAAGGAACTGTTCCAATCAGGAGAACAACAGAGCAGGATTTTCTAAGAGCAAGCTCTATCAGAAGA TTTGGAAGAAAACCAAGAGGTGTACGGAGAGATTCATCTGGCACTGGTCATGAGGTTAGTTAGTTGAAGTTAAAATTTTA AAAAGTGAACTTCCTTTTCCAATTCAATCTTCTCTGCTATTGTTCCATTTCTCATTCATGATACATTCATTTGAAACCCT CGCCAATGCTTGCATAGCCGGCCCGGTCGCAAGCGCGGTAAAGGATGAAGGTTGTGTTTGGCCTTCCGCAGCCAACATAA AACTAGCTGATATCTTCAATATTCAATACATTCATTTGAAAGGAAAACATCTTCTCTTGTTTTATCATCATTCTGTTTTC AGTTTCATTTTATTCCTTGCCAGAAGAACAGAACAACCCTGCTTTTCCTTATGCATAAAAGTTCAATAGAATTTACAAAA AACAAAAAAACCATAAGACATTGAAGGGACACCACTTGTAAAAGTTTGCCTCCTGTTTATTCTGAAAAGTAACATAAAAA AGCTTAAGAAACACTATAGGCATAAACATATTTTGCATAATTTTGACTCACAATTTTGAACATGTTATTGCAGCATGCAG TGGTTTTTGTTAATGGAGATCAATATTATGGAGCCAAAGCAAGCATAAACGTGTGGACACCCACAGTAACTGATCAATAC GAATTCAGCTTGTCTCAGATATGGGTTATTGCTGGATCATTTGGTAATGATCTGAATACACTAGAAGCTGGATGGCAGGC ATGTACACTCTTTTCTAAAGATTATCCTAATTTGGCAATATTTCTCGTTTTTATGTTCATAATCATCCAGTTTTGTAGTG AGTGTAATCGCATGTTTGTAAATTCTACTACAATTGACTCGAAAGCAAGAGTCAATTAGGTGGAGAAGTTCTCTGAATAG CTTCTGGGTTTCAGGAACGAGAAGCTAATCCAAACATGTTATAAATAAATTGATGAAGACTCTCTAAGGAATGCATTTCT CTTAGCATGTTTGAATCAGCTTTTATTTCCCCAGAATAAATTTTGGCACCCAGAAACTACTCATAGAACTTCTCCCAGAA TTGATTCTGCATTTGATTTGTTGGTTTATAGTCCATGAGCTTATAGGCATATTTTCTTACTTCAGGTTAGTCCTGAGCTA TATGGGGACAACTATCCTAGGTTCTTCACTTATTGGACTGTAAGTATTGCATGCCTCTTTTCTCTTCCTTTTACCAAGTT TGGATCGGCTTATTTTTATGCGAATCAATTCTGGTGCTCAGAAGTTACTTATAGATGCTTCTTTCTAGAATTGATTTGGG CTTTAAAATCAATTGCAAACTTTTTTTCAAACATGCACTTTGTTTCCCCAGCTCCCTTGTTTCTTTCACACACCTTAAAG ATATTTCCTATTTCGTAGACTGATGCATATCAAGCCACTGGATGCTACAACTTATTATGTTCAGGATTTGTCCAAACAAA CAACAAGATAGCAATAGGAGCTGCAATCTCCCCAAGATCTGCTTATAATGGCAGACAATTTGATATTGGCATAATGGTTT GGAAGGTGAGTAACTTTTTATTTTTCCTCATCCAAATCAACATTGTAAGTCAACCCAAAAAAAGGCACCAATTAAGGAGA AAATAAGGTCCTTTACTAAACACAAAGCTTAATAGTACTTTGGAAGGTGGTTTGCTGTTAATTGAAGCTTTTGTGCTTTT CAAACCTTTATTTGCTATATATGACAGCTTATAAAAAAGAGCTAAACAGGCATGATCCAATCAAGAATTGAAAAAAAAAA AAAAGAATTGCATCTAATTTAAGTGAAGCAATAATTCATATACTTTTTTTTATCCTTTTGTTTTGAAATTTTCTGCATGT TATTGTTATTCAAATTGGAAGATTCCCTTGCTTTCCATGTACCAGTGTCCTTCATGGGGGGGTCTAGGACTGTTCCTATC TTTTCCTTTATTAAAGTAGTGTTTCACAGCTCCCTCTCTGCTTTTTGCTTTGGTTTTTCTGAAACTGGCTTCTCAAGCCT AAATAATTAACAGCCAAACATGCCCTGCTGCTTCCTCTTCCCATTTATATTTTCCTCATATTATCTTAATCATGGCAAAA AGACCGTTTATAAACAAGTAATTGCTTAACCCAGAAGGGAAAACTCTCTTTATACAATAATGCCAGAACATTAGTGTAAG TTTAGACACACTTGGTTACATTTATGTTTGTAAGTTTAGACACATTTGTACACTCATAATAGAATTGATTCAGAAAAAAA TAAGTAGATTTAAACATGCTACGAATCAAGTAATTTTAAATGGGGCAATCACTCTCAGGAAAAGAAACTTTTTCCTTAAT AGAATAATAGAATAGTATACGAATATTGTATTTGCCCGTGCTAAAAATTTTACACTACCTCTCCCAATTAGTCATTGTTA ATTTTGCTTGATATGTTAAATTTTCGTCACTCTTACCCATTTTTTCTAGTCTTGTCCCTGATGAAAACTCTAAATGTTTA GGATCCAAAGCATGGACATTGGTGGCTGGAGTTTGGATCAGGACTGTTAGTTGGGTATTGGCCAGCATTCTTGTTCAGTC ACTTGAGAAGCCATGCAAGCATGGTTCAATTTGGAGGAGAAATTGTGAATTCCCGTTCAAGGGGTTACCACACTGGCACC CAAATGGGCAGTGGCCATTTTGCTGAAGAAGGTTTTAGAAAAGCAGCTTATTTTAGAAACCTTCAAGTGGTTGATTGGGA CAATAACTTGCTTCCTCTCTCAAACATGCACCAATTGGCTGATCATTCCAATTGCTATGACATAAGAGAGGGAAGAAACA ATGTTTGGGGGACTTACTTTTACTATGGAGGTCCTGGAAGAAATGTGAGATGTCCATGA
CDS sequence (LotjaGi4g1v0231100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTGGAAGGATCCAAAGCATGGACATTGGTGGCTGGAGTTTGGATCAGGACTGTTAGTTGGGTATTGGCCAGCATT CTTGTTCAGTCACTTGAGAAGCCATGCAAGCATGGTTCAATTTGGAGGAGAAATTGTGAATTCCCGTTCAAGGGGTTACC ACACTGGCACCCAAATGGGCAGTGGCCATTTTGCTGAAGAAGGTTTTAGAAAAGCAGCTTATTTTAGAAACCTTCAAGTG GTTGATTGGGACAATAACTTGCTTCCTCTCTCAAACATGCACCAATTGGCTGATCATTCCAATTGCTATGACATAAGAGA GGGAAGAAACAATGTTTGGGGGACTTACTTTTACTATGGAGGTCCTGGAAGAAATGTGAGATGTCCATGA
Protein sequence (LotjaGi4g1v0231100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVWKDPKHGHWWLEFGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSRGYHTGTQMGSGHFAEEGFRKAAYFRNLQV VDWDNNLLPLSNMHQLADHSNCYDIREGRNNVWGTYFYYGGPGRNVRCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 129 | 129 | 5.0E-88 | – | |
| PANTHER | 1 | 129 | 129 | 5.0E-88 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Pfam | 2 | 122 | 121 | 9.8E-42 | ||
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| Phobius | 33 | 129 | 97 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0231100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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