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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0232400 |
| Transcript ID | LotjaGi4g1v0232400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein apaG; TAIR: AT1G06110.1 SKP1/ASK-interacting protein 16; Swiss-Prot: sp|Q8UI68|APAG_AGRFC Protein ApaG; TrEMBL-Plants: tr|A0A151RPX9|A0A151RPX9_CAJCA Protein apaG; Found in the gene: LotjaGi4g1v0232400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54361260..54364999) extracted from Lotus japonicus Gifu genome v1.2.
CAAACATGCAACACGTGTATGATTTGTTGTCCATATACAGCAAAACATCGGATAGGGTACAGACATGAGAAATTTTGTTT ATACTATAACAATAAACTAACTTAGCCACTAAACAACTGTTTCAGTACTCAGACCCGCCGTGCATTGCAGTCCTCAAACT TCGCTACCTGTATTTCCGATTCTGATCACGATGGGATAAGATTCATTTCTTGCAAAATTCAACAAATTGGAAGAAGAAAA TCTCCAAATCATCAGAACAAAAATGCATTCGCCATCGTTAAGTATGCGTAGTCTGGTCAATTTGCGGTTGCTTAGTTCTG ATGTGAGCGTGAAGAGGAGAAGTAATGTCATCGTGGCTTGTGCCACAGAGGGAGACACTCGAAGCTCCTTTCTCTCCCGG ACCCAAACCTATGCTCTTCTCAAGCAGCAAATGGAAGTTGCTGCCAAATCTGAGGTTAGTTAGTTTTTTTTATCGGCTAA TGTTAGTTGTTAATTGCTAGTAAATTAGTTCATTCGCCCGGGTTTTAACCTCGGTCCTTCACCCCCTTAGCTCTCCAAGT TAGTTAACTGCTTTTCGTTTCTTCTCCCGTAGAATTTCCAATCGGATAAAATTTCGTTTACAATTGAGTATACGAACACA AAATTGATTATTGTTTTTCTTTAATCGCTATTGTTGTGTAGGATTACAAGGAAGCAGCTAGAATTCGAGATTCTCTGAAG TCGTTTGAAGATGAGGAGCCTGTTTTGCGTCTCAAGAGATTGCTCAAGGAAGCAATTGCTGATGAGAGGTTCCAGGTGTT TTTTTTTCTTCTGATTATATTTTTTATATTTTCTTAGTTTAATGCTTAAAACCTTTAAATTTTGTTGTGTCACATTTAAA TAGTAGGAAAATACTAAAAAGTTGGTAGTTAGTTATCCCAACTACTCCATGATTTCTAACATAGCTTCACTAACATATGT TAACTCATGTTTTTAACTAAACATGATGAACCACCTCCCTTCAGAAGGTTGTGTGTTCGATTCTCACTGCTGATGTAAAT ATTTTGTAAGCGACCTATGGTTGTTCCAGAGGCATGCTCTGACTCGTAGTGGGGAACTGAGACGAACCCGCCTAATTTTT TTAACAAAAAAATAATTTTCTTGGAGCTTTTCCCTCATAAGACATTGTAGTTCTTATGTTGCTCTCATGAAAAGGTGTGT GTTGAAGAGTACATTAATCAAGATTTCTTGTTTTATTAATGCCAATCAACTGTTCCTGCATATTAGTATTCTAGATGACA GTAGCACCACGTTGCTTGATAGTACTATTTGATTTGTCTTAATTATTGTTATTGATGAGTTGGTCAAGACAGAAGACAAG ATTTACACTGCTTTCAAAATATTTGGGACTATGCATGTGTCTCGGTGACTCAATGTTTGAAAATTCAATTAACATTGTTT CTTTCAAGTTTCAACTCAACCATAGATGTTGTAATAAGCACATGGCTAGTCTTTTAGAACTCCACATTTCTTGGTATTGT TTTCTTTTTCTTTTACCTTCTATCAGATCAGTACACCTCACATCTTTCATAAAAAATTGACTAAACATGACCTAAGACTC CATGTTGTGACATAGAAATTTTACATTTTGAGACCTTTTCTTGCCTTGTTTTTTTCAGGATGCAGCTAGTTATCGTGATG AGCTAAAGAAAATTTGCCCCCACTCTCTTTTAAAATGTTCCAGTGACGCTACAACACTGGTATGATCACTACATTATGTT ACTCTCTACGTAGTTCTTTCTTCATGTAAGATATCTTCAGAGATATACAATTAACAAATAAAGTGGCTTCCAATTTCTAA ACAGTGTTATTTAAGGTTGATTGCTTTGATAAAATAATTAGTTCAATACCATGTCTTTTGAAATGGAAATGTTGAATGTC TCTCTTGAAAAGTTAATTGGACTCTGTGTACTGAGAGTTAGTTGTCTAAGATAACTGTCTCCTAAGTTTAATAATACCCC TCTTACAGAAATTATTTGAATTTTCTTTTCTTTATCTGTTAGAAACTGTTCGCCTCCTAATTTGGTTTTGTAATAGAAAT TTATACAACTTATTTTGAAGTCTTCAAGAGAATAAACAAATTATGAATCCTTATTTCAATTAAGATATATATCATATATT TGTACCCAAAAAAAGAAAAAACTGAGCTCTTAACATTTAATTCCAACTTGTTCAGGGAGTCAGGGTTCAGGTAAGAAGTG TATATATAGAGGGTAGAAGTCAGCCTTCAAAGGGACTATACTTCTTTGCATATAGAATAAGAATTTCCAATAACTCAGAC CACCCTGTCCAACTTCTTAAAAGGCATTGGATTATAACCGACGCCAATGGGAAAGCAGAAAATGTCTGGTGAGTTAATTC TTCTTCTATTTACTGTTATACTTTGTTATGCTTCCTGGGTGTGTTTCTTTTTCCTTCTCATGACACTTAATTAATGACAG ACCACAATAACTTTGATTCCTGTAACCAACTCTACCTAATGGAAAGAGACTTATTGTTTTAAACATGTGTGAATCAAGTT AAAATAACTTCTGTATTTTGTTTTCCATGTGACAGGGGGATTGGGGTTGTTGGTGAACAGCCAGTAATACATCCCAGGAC TAGTTTTGAATACTCTTCAGCATGCCCATTAAGCACACAAAATGGTAGAATGGTGAGGAAGTTCCCTCCCCTTTTCTTTG TACTTTTTTCTCACAATTTCCTTGTGTAATAGGAGTTGAATTAGGCCATATTATACATGGTTGAATATGATTGATATGAG TTGTGATTGCTTGCATCACCATGTCATATTCAGTTATCTCTTAGGCCTACACAGATGGATGAAGATCGTGAATCAATTCA TTTTATAAATTATTTCTAACAATTTGATCAACACATTTACTATTAACACAAAATGGGTTGCTATCATGATTTTAATACAT TTAGTATTAGCAATTTGATCAACACTCCCAGTTTCTTTACCAGAGTAGAAACTGGTATAAAATTGGATGTAGTGAAGACC CTCAATGATTTATATTTATTGGTTGCATTTGCTTGTTTGATTCAATATTGATTTTAAAAGACTTTTATTGTAGGAAGGTG ACTTTGAGATGATCCACATTGAGAGTGTAGGCTCACGATCATTTAATGTTGTCATTGCCCCATTTTCTCTCTCTTTACTT GGAGATGATGAAGTTCATACGATTTGAGATTGAACTGCAGCATCACCTCTGAGATCATGTTCGATTAGCATCTGGAGTAT GTGGAGGATTATCGGTATCACTGCCATTATGAAAAATTAAAGCAGGCTATTTGTATTATCAAGTTTAAAATTAAAATTGA TTGTGGGTAATATATTATCTGCATGCATATGTATTTTATTGGATTGATGTGTAAAAAAAAAAACAGAAAGAATATTCAGA ATATACTACCATACACAGTTGAAATTTGAAATTGTGTTCCATTTCAAACCCCAATGTACCCAGAAAAGGGAGGAATAAGG GGCTGTCGAAGTTACTTCATGGGGTAACTTTCACATTATAAATTATCATGAATAACAAATGAAATATGAGGATTTTAATT ATAAGAATTTTTTTGTTTAAACTTTAAAGGTATTCTCCAAAAACACTGTCTTATAATTAAAAAAATGAAAATAGTAAACT AAGCAATAAAAATTATTGAGATACAAAAATACAACATAACTATGATAAAGAAATTAAAAG
CDS sequence (LotjaGi4g1v0232400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTCGCCATCGTTAAGTATGCGTAGTCTGGTCAATTTGCGGTTGCTTAGTTCTGATGTGAGCGTGAAGAGGAGAAG TAATGTCATCGTGGCTTGTGCCACAGAGGGAGACACTCGAAGCTCCTTTCTCTCCCGGACCCAAACCTATGCTCTTCTCA AGCAGCAAATGGAAGTTGCTGCCAAATCTGAGGATTACAAGGAAGCAGCTAGAATTCGAGATTCTCTGAAGTCGTTTGAA GATGAGGAGCCTGTTTTGCGTCTCAAGAGATTGCTCAAGGAAGCAATTGCTGATGAGAGGTTCCAGGATGCAGCTAGTTA TCGTGATGAGCTAAAGAAAATTTGCCCCCACTCTCTTTTAAAATGTTCCAGTGACGCTACAACACTGGGAGTCAGGGTTC AGGTAAGAAGTGTATATATAGAGGGTAGAAGTCAGCCTTCAAAGGGACTATACTTCTTTGCATATAGAATAAGAATTTCC AATAACTCAGACCACCCTGTCCAACTTCTTAAAAGGCATTGGATTATAACCGACGCCAATGGGAAAGCAGAAAATGTCTG GGGGATTGGGGTTGTTGGTGAACAGCCAGTAATACATCCCAGGACTAGTTTTGAATACTCTTCAGCATGCCCATTAAGCA CACAAAATGGTAGAATGGAAGGTGACTTTGAGATGATCCACATTGAGAGTGTAGGCTCACGATCATTTAATGTTGTCATT GCCCCATTTTCTCTCTCTTTACTTGGAGATGATGAAGTTCATACGATTTGA
Protein sequence (LotjaGi4g1v0232400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHSPSLSMRSLVNLRLLSSDVSVKRRSNVIVACATEGDTRSSFLSRTQTYALLKQQMEVAAKSEDYKEAARIRDSLKSFE DEEPVLRLKRLLKEAIADERFQDAASYRDELKKICPHSLLKCSSDATTLGVRVQVRSVYIEGRSQPSKGLYFFAYRIRIS NNSDHPVQLLKRHWIITDANGKAENVWGIGVVGEQPVIHPRTSFEYSSACPLSTQNGRMEGDFEMIHIESVGSRSFNVVI APFSLSLLGDDEVHTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 253 | 217 | 1.0E-113 | – | |
| ProSiteProfiles | 47 | 82 | 36 | 9.199 | ||
| SUPERFAMILY | 48 | 80 | 33 | 8.89E-6 | ||
| Pfam | 53 | 81 | 29 | 5.6E-6 | ||
| ProSiteProfiles | 82 | 117 | 36 | 8.826 | ||
| Pfam | 87 | 114 | 28 | 3.4E-5 | ||
| Gene3D | 121 | 254 | 134 | 9.3E-45 | ||
| ProSiteProfiles | 125 | 252 | 128 | 39.5 | ||
| SUPERFAMILY | 127 | 246 | 120 | 1.2E-40 | ||
| Pfam | 143 | 226 | 84 | 6.4E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0232400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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