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IPR001943

Source: InterPro

Description

IPR001943 is a UVR domain.

<p>During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [[cite:PUB00006064]]. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [[cite:PUB00006065]].</p> <p>A conserved region similar to the UVR domain is also found in the ATP-binding subunit of bacterial and chloroplastic Clp ATPases [[cite:PUB00057847]], which suggest that the UVR domain is not only involved in the interaction between uvrB and uvrC.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Associated Lotus transcripts 25

Transcript Name Description Predicted domains Domain count
Lj1g3v1453970.1
– PREDICTED: chaperone protein ClpC, chloroplastic-like [Glycine max] gi|356516495|ref|XP_003526929.1|
Domains
21
Lj1g3v2098330.1
– Nuclear transport factor 2 family protein isoform 1 [Theobroma cacao] gi|508715446|gb|EOY07343.1|
Domains
9
Lj1g3v4690470.1
– PREDICTED: chaperone protein ClpC, chloroplastic-like [Glycine max] gi|356513459|ref|XP_003525431.1|
Domains
25
Lj2g3v1267210.1
– F-box only protein [Medicago truncatula] gi|357487407|ref|XP_003613991.1|
Domains
8
Lj2g3v1267210.2
– UvrB/uvrC motif-containing protein [Arabidopsis thaliana] gi|42568906|ref|NP_178438.2|
Domains
9
Lj4g3v1476200.1
– PREDICTED: protein ApaG-like isoform X1 [Cicer arietinum] gi|502152325|ref|XP_004508873.1|
Domains
12
Lj4g3v2882010.1
– PREDICTED: chaperone protein ClpC, chloroplastic-like isoform 1 [Glycine max] gi|356508861|ref|XP_003523172.1|
Domains
24
Lj4g3v2882010.2
– PREDICTED: chaperone protein ClpC, chloroplastic-like isoform 1 [Glycine max] gi|356508861|ref|XP_003523172.1|
Domains
33
LotjaGi1g1v0179100.1
– Protein ApaG; TAIR: AT1G06110.1 SKP1/ASK-interacting protein 16; Swiss-Prot: sp|B0UC46|APAG_METS4 Protein ApaG; TrEMBL-Plants: tr|I1JX82|I1JX82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0179100
Domains
12
LotjaGi1g1v0333900.1
– ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333900
Domains
27
LotjaGi1g1v0333900.2
– ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|A0A0L9UEV5|A0A0L9UEV5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333900
Domains
32
LotjaGi1g1v0333900.3
– ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0333900
Domains
32
LotjaGi1g1v0684200.1
– ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200
Domains
32
LotjaGi1g1v0684200.2
– ATP-dependent Clp protease ATP-binding subunit ClpB; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|A0A1J7GIN0|A0A1J7GIN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200
Domains
32
LotjaGi1g1v0684200.3
– ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200
Domains
32
LotjaGi1g1v0684200.4
– ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200
Domains
32
LotjaGi1g1v0684200.5
– ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684200
Domains
32
LotjaGi2g1v0298000.1
– Heat shock protein HspQ; TAIR: AT2G03390.1 uvrB/uvrC motif-containing protein; Swiss-Prot: sp|Q67Y99|CLPF_ARATH Clp protease adapter protein ClpF, chloroplastic; TrEMBL-Plants: tr|A0A151TFI2|A0A151TFI2_CAJCA F-box only protein 21; Found in the gene: LotjaGi2g1v0298000
Domains
12
LotjaGi3g1v0219300.1
– F-box protein SKIP8; TAIR: AT3G09250.1 Nuclear transport factor 2 (NTF2) family protein; Swiss-Prot: sp|Q93YV9|SKIP8_ARATH F-box protein SKIP8; TrEMBL-Plants: tr|I1J735|I1J735_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0219300
Domains
9
LotjaGi4g1v0232400.1
– Protein apaG; TAIR: AT1G06110.1 SKP1/ASK-interacting protein 16; Swiss-Prot: sp|Q8UI68|APAG_AGRFC Protein ApaG; TrEMBL-Plants: tr|A0A151RPX9|A0A151RPX9_CAJCA Protein apaG; Found in the gene: LotjaGi4g1v0232400
Domains
12
LotjaGi4g1v0232400.2
– Protein apaG; TAIR: AT1G06110.1 SKP1/ASK-interacting protein 16; Swiss-Prot: sp|Q8UI68|APAG_AGRFC Protein ApaG; TrEMBL-Plants: tr|A0A151RPX9|A0A151RPX9_CAJCA Protein apaG; Found in the gene: LotjaGi4g1v0232400
Domains
12
LotjaGi4g1v0421200.1
– ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200
Domains
37
LotjaGi4g1v0421200.2
– ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200
Domains
37
LotjaGi4g1v0421200.3
– ATP-dependent Clp protease ATP-binding subunit; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|I1JXP9|I1JXP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200
Domains
37
LotjaGi4g1v0421200.4
– ATP-dependent Clp protease ATP-binding subunit ClpB; TAIR: AT5G50920.1 CLPC homologue 1; Swiss-Prot: sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic; TrEMBL-Plants: tr|A0A1J7GIN0|A0A1J7GIN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421200
Domains
37

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00009 CDD 1 4.00