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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0234600 |
| Transcript ID | LotjaGi4g1v0234600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TAIR: AT5G62790.1 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Swiss-Prot: sp|Q8W250|DXR_ORYSJ 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic; TrEMBL-Plants: tr|A0A151S841|A0A151S841_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0234600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54877536..54883162) extracted from Lotus japonicus Gifu genome v1.2.
ATAGCTGCCAGAAATGACCCCATCCATTGTTTTTTGCTATGCAGCAATGTTATTAAACTAAGGATACCATTTCTTGTACC ACAGACTCTCCTCTCCTACTAAGAGCACCCACCATTCTTCACTACAAATTCATCTTCTTACAAACTGAATTTGGATTCAA CTGTTGTCATGGCTCTCAATCTGTCTTCTCCAGCTGAAGTCAAATCCAGTTTCTTCACCGATTCCTTCAACTCTTCATGC TTCACTCCGAAATTCCCAGGTTCATTTTTCATTCTGTCTGTTTTTCCTTCCTTTTTATCATCTGGGAAAATCAAAAGGTC AACAACTTTATAGAGAACCCACTATTTTGCTTCTGTTGAATTGTGTTTTCTACTTTTCCCAGAAATTTTGCTATTCATTG TATTTTTCTGTATGTCTGTGCAATCATATTGCTGTTTATTCTGATAAGAATGTTATGTTATGAGTTGAGCATGAATCATT GTCTTGTTTTTTAATGTGAAATTTTAGAGAAGATAGGAGGGTTTACATTTTTTGAAAAAAAAATTATTTGTATTTGCAGT GAGTTTTGCTTTGAAGAGAAAAGGGTGTGGAGGAGTATCTGGAAGAAGAATTCACTGTTCAGTGCAAACACCGCCACCTG CGTGGCCAGGGAGAGCGGTCGTAGAACCAGGTCGAAAGACTTGGGAGGGGCCAAAGCCCATCTCCATTGTGGGATGCACT GGTTCAATTGGAACTCAGGTATTGCTTCAGTTCAGTTCTCTCTTATAAATCTTGCAAATGCATGTTGGGAAATCAATTCT GGGGAGAAGCTCTTTTGTGTTTCAGAATTAGTTATGGCAAAAATAAGCTGATCTAAACAGGCTATAAATCAATTTATGGC TTATTCTTTTTTATCATAAATGAATATATGACTAGAATTGGTTGATTGTTTGTAGATGTAGCTTGACTTCCATTTGTTTC TTATTCTTTGATGTGATGCATATTTTCCCCTGTCTGCTTTTGCAGACACTAGATATCGTGGCGGAGAATCCAGATAAGTT TAGAGTTGTTGCACTTGCAGCTGGTTCAAACATTACTCTTCTTGCAGATCAGGTAAATTCTTCAGTCCAAGCAAGTGGAA CTTTGGATTGATTTGTCTCTCTCTCTATCTATGACTAGCTAGGATTTACTTGATCAATTCACTCCTGTGGCTCATTTACT TCTGTGACCATTGTTACATTAGTTGTGATGAAAATGGACTTCCTGGTTCTGTTTTTTAAAAGCTTTGGCCTAGTAGGCAT TTTGTTCTTAAGCATTAGTGGGGGGTTTCATTATTTTTCTCTTGAGAAATCATTAAAGACTAAACTAGTGTTAAAACTAA ACTAATTAGAATGGTTTAAGTGTTGAATATCCATACCAACCCAAGAGCTAAGGTCTGGTTTGCATCTCACCAAAGTCGGA AAATGCTGCACCATTTTGCAGCTTGTCAAAAATGGCTGCCAAGCCAGCTATATGCCCATATGCAGGAATCGCTAGAGTCA AGCTTCCAGCTGGTTGTGGTTAGGCTGAGAGCCAATGTCTAAGAGAGTGAGCTCTGAGTGTGGGTGAGGCCAAATAGAGA GTTGAGAGTGTTGTAATCTGTTGAGACTTGAGAATAATATAAACAGAGTTTCTTCTCCATGGACGTAGGCACATTGGCTG AGCCACGTTAAATCTTGCCCCCCTTTATGTTCCTCGTCCTGAACCGGTCCCAACATTATGTTTCAATTAACCGTGTCTCA TATTTTCAGTAATCAATATACCGACCTGAGAAAAGAAAGATTAATCTCTTTTAATATTAATGTTGAGCAGGTAAGAAGAT TTAAGCCACAACTTGTTGCTGTTAGAAACGAGTCTCTTATATCTGAACTTGAAGAGGCATTGAATGACCTTGAAGAAAAA CCTGAGATCATCCCTGGAGAGCAGGGAGTCATTGAGGTGGACATTTGGTTTGCTTATATAATGTAGTTTAGCATTGAGAA CAAACAATGTTTTTCATAAGCTATAGCTTACATGTTCTCAGGTTGCTCGTCATCCAGATGCAGTCAGTGTAGTCACAGGA ATTGTAGGCTGTGCAGGACTGAAGGTAACATCTTTTCCTGGATTTTTGCCCATCTTGGTAACCAATTTATTTGCTATGCT ATAAAACGAGGTCTTCTGTGTTCATGTCTACGGATCTTTTAATATTAATTTCATTAATCATGTCTGGAAAATTTAATATT AACTTTGTCAAACAACCACTTAATCCCAAAAGCTTAAGCTGTTGGGTAAGGGCCACTTTAATGGTTTTATATTATATTCT AACACGCCCCCTCACGCAAGAGCCCTTTGGGCTTGAAGCGTGGATAAATGCATAGGCCCACCTACCATGTGCTTAATTAA ATTCCACTTTTTTAATTAGAAAGTGAGGGGAGCAAGGATCGAACTCTAGACCTCTCGGTCATAGAGGCTCTGATACCATG TCAAACAACCACTTAATCCCAAAAGCTTAAGCTGTTGGGTAAGGGCCACTTTAATGGTTTTATATTATATTCTAACAAAC TTCATTAATCATAGTGAGACATCAAAGATAACAGCCAACCCTTATTACACTGGGTTCAAAATAGTTAGGCATACTTATTA ATTATACGTTAGGGCATTGATGGTTTGAAAAGAGAATGATCTGAAGTATAGGAAGCCATTCCATGTATAATAAAGATAAA AGAGAAGCATAAGAAATTTCTTATAATGGCCCATGGTGCATGAACTTGGTTACATTTTTTCTTCAGTTCCAGTTCTATTT TTTGAAGTGAATATTTGTTTTTGAGTACATCAAATTAGTACCTAAAAAACATAGCATTGAATACATTAGTCCTTGAATGT GGATTTCTTAGTTCCCACATCATGTGTACCTTGGGGATTGATTTAACCGATGAAATAACATTTTGAGTAATTTGACTACT AAATGTATTTTCGGGGCTCATGGATATAATTTTCACCATTCATGTACCAAACTACCAATATGGCCAACGTGGTATCTATC ATGGGCTGATGCCTGATTTGCCTATTTACTTGTTATTTTTAGATTAACAAATCTGTAGCAAAATTAATTAGAAAAATTTG TAGCTGAAATTCCTCTTATTATTTTATTAGCCAACAGTTGCTGCCATAGAAGCAGGGAAAGACATAGCTTTGGCCAACAA AGAGACACTGATTGCTGGAGGTCCTTTTGTTCTTCCTCTTGCTCAGAAGCACAACATAAAAATTCTTCCTGCTGATTCAG AACACTCTGCCATTTTTCAGGTACAAAAGCACATAATCTATTAAAATTTATGTGTATTGTGCAACAAGATTAATAGACTG CATATTATTCTCTGGCCTCTACATCTTTTTAATGGAACTCAAGCAAAAACTTATAAGGATTATTCGCTACAGTGTATCCA GGGGTTGTCAGAGGGTGCACTTAGGCGAGTTATTTTAACTGCATCTGGAGGTGCTTTCAGGTGTGTAAAATAAACATAAC CCAGCTGCACTTTTATTGTTTTGCTGGTTCAGTTGCTCAACTTTTTTGTCTTTGTATGTAGGAAACATTTTGTTTTTTCT GAATCAAAGGGAATCTATACTACTTTAACTCTTAGTATATACTCTATGCATGTCTGATTTCTGGTTGCTGTCTACTTGTC ATATCACGACAGAGCATGGAAAACCTTGAATTTCCTTTCTTGGTTCTATTTCTAGGCTCTATATAATCAACCTGACTTTA ATTATCATCCTCTTGGTGATAACAGGGATTGGCCTGCTGATAAACTGAAAGATGTTAAAGTAGCTGATGCATTAAAACAC CCTAATTGGAATATGGGAAAAAAGATCACTGTTGACTCTGCTACACTTTTTAATAAGGTTTGTTTCTATCTGTGATGATA CCTGTCTAATTATGTGGTTTGAATTTCCTAGCAATAAGGTAAATTTGTCCTGCTTCTTCACAGGGTCTAGAAGTGATTGA AGCACATTACTTATTTGGAGCTGACTATGATAATATTGACATTGTCATTCATCCACAATCAATCATACATTCAATGATTG AAACACAGGTTTAAACCTTATTGTGTTGGTTTTCACTTTTTGATATCCATATATTCAGACACTAACAGAGTAACAGATAA TGGATACAAGTTCCCTGGCCCTTGGCTAAATTAGCAAAGGGGTGGGTGAGCTTGTGGAAAAGAAGAACGGAGACAAAGAT CATTAAATATTGTTTAATCTTTATCTAATTACTTTACTATTTCTTCATTTCAGGATTCATCTGTTCTTGCCCAGTTGGGC TGGCCTGATATGCGTTTGCCAATCCTTTATACTTTATCATGGCCTGACAGAATTTATTGTTCTGAAGTCACTTGGCCTCG CCTTGATCTTTGCAAGTACGATTATTTTCCCCTGCAGCTCACTTATTTCATATCAATCAAATTCTCTTTGGTCCATACTT CTTGACATCGAGTATCTAAATTTTGACGCCTTTGTTATTAAATGGAATTTTATAAAATTCTTGAAATCTGATCGTGCAGG CTTGGTTCACTTACATTTAAAGCTCCTGACAATGTTAAGTATCCATCTGTGAATCTTGCCTATGCTGCTGGCCGTGCCGG AGGCACCATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAAATGTTTATCGATGAAAAGTAAGATCTTTATT TTCCTCATTACAACTGTTGCACTAAGAATTTTGCTGAATTTTTGTATCTTTTACATGGGATTTTCCTCTTGTCATTGTAG ATTATCCACTAATTGGCTATTTTTTTGTTTCCAGGATTAGCTATTTGGATATTTTCAAGGTTGTGGAGCTAACATGTGAG AAGCATCAGAATGAATTGCGAACCTCACCTTCCCTTGAGGAAATTATTCACTATGATCTGTGGGCTCGAGAATATGCTGC TAGTTTGCAGAACACTTCTAGCTTTACTCCTATTCCTGCATGAAGAACACCATAATTTATGAGGGCATTTAATGTAAACA ATGTAGGATGAAGCATTTCCCAGATATTGAAAAATGAAAAGGTTTTTACTGATGGAATCTTTATATTTTAATACATTTTA CTTGATCTTACAGTTTTATCATAATCTCAAGAAAATAATTTGTCTTTAGAATGTTGGCCACTATCAAAACTCTTGAGTTC ATGTTGTCTAGGCACATTCGGAATAATAAGATAGTAAGAAGGACAATACACTTATATCCATGCTACATTCAAGTAAGTTT AGTTCCTTGATGTTAGTAATTGTTGGTTCATTACACATGATCATTTCATAGTTGGTAAATTACTATTCAAATTAAGTTGA GAGAACTCACGAAATTGAAGAGGTTCAAATGCTCAAATCCCAAACAAATTGATGGGTTCAGAGCTTGCGCATGTTCTGGA AACGAATCAACAACTAGTACATTTTATCCTTGAATGTACTAATAGATAACAAACAAGTTTTTCGAAAGGAGACTCAAAAT AGCATTGTCTTTGTCTACCACTGCCGTATGTAAGAGGAGAGTGGGCTGCGCACTTCCTTCAGTTGTAATTGGACATAGCC TCCTATGACCTATTTAGTTTTACCAAG
CDS sequence (LotjaGi4g1v0234600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCAATCTGTCTTCTCCAGCTGAAGTCAAATCCAGTTTCTTCACCGATTCCTTCAACTCTTCATGCTTCACTCC GAAATTCCCAGTGAGTTTTGCTTTGAAGAGAAAAGGGTGTGGAGGAGTATCTGGAAGAAGAATTCACTGTTCAGTGCAAA CACCGCCACCTGCGTGGCCAGGGAGAGCGGTCGTAGAACCAGGTCGAAAGACTTGGGAGGGGCCAAAGCCCATCTCCATT GTGGGATGCACTGGTTCAATTGGAACTCAGACACTAGATATCGTGGCGGAGAATCCAGATAAGTTTAGAGTTGTTGCACT TGCAGCTGGTTCAAACATTACTCTTCTTGCAGATCAGGTAAGAAGATTTAAGCCACAACTTGTTGCTGTTAGAAACGAGT CTCTTATATCTGAACTTGAAGAGGCATTGAATGACCTTGAAGAAAAACCTGAGATCATCCCTGGAGAGCAGGGAGTCATT GAGGTTGCTCGTCATCCAGATGCAGTCAGTGTAGTCACAGGAATTGTAGGCTGTGCAGGACTGAAGCCAACAGTTGCTGC CATAGAAGCAGGGAAAGACATAGCTTTGGCCAACAAAGAGACACTGATTGCTGGAGGTCCTTTTGTTCTTCCTCTTGCTC AGAAGCACAACATAAAAATTCTTCCTGCTGATTCAGAACACTCTGCCATTTTTCAGTGTATCCAGGGGTTGTCAGAGGGT GCACTTAGGCGAGTTATTTTAACTGCATCTGGAGGTGCTTTCAGGGATTGGCCTGCTGATAAACTGAAAGATGTTAAAGT AGCTGATGCATTAAAACACCCTAATTGGAATATGGGAAAAAAGATCACTGTTGACTCTGCTACACTTTTTAATAAGGGTC TAGAAGTGATTGAAGCACATTACTTATTTGGAGCTGACTATGATAATATTGACATTGTCATTCATCCACAATCAATCATA CATTCAATGATTGAAACACAGGATTCATCTGTTCTTGCCCAGTTGGGCTGGCCTGATATGCGTTTGCCAATCCTTTATAC TTTATCATGGCCTGACAGAATTTATTGTTCTGAAGTCACTTGGCCTCGCCTTGATCTTTGCAAGCTTGGTTCACTTACAT TTAAAGCTCCTGACAATGTTAAGTATCCATCTGTGAATCTTGCCTATGCTGCTGGCCGTGCCGGAGGCACCATGACAGGA GTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAAATGTTTATCGATGAAAAGATTAGCTATTTGGATATTTTCAAGGTTGT GGAGCTAACATGTGAGAAGCATCAGAATGAATTGCGAACCTCACCTTCCCTTGAGGAAATTATTCACTATGATCTGTGGG CTCGAGAATATGCTGCTAGTTTGCAGAACACTTCTAGCTTTACTCCTATTCCTGCATGA
Protein sequence (LotjaGi4g1v0234600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALNLSSPAEVKSSFFTDSFNSSCFTPKFPVSFALKRKGCGGVSGRRIHCSVQTPPPAWPGRAVVEPGRKTWEGPKPISI VGCTGSIGTQTLDIVAENPDKFRVVALAAGSNITLLADQVRRFKPQLVAVRNESLISELEEALNDLEEKPEIIPGEQGVI EVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAQKHNIKILPADSEHSAIFQCIQGLSEG ALRRVILTASGGAFRDWPADKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLFGADYDNIDIVIHPQSII HSMIETQDSSVLAQLGWPDMRLPILYTLSWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSVNLAYAAGRAGGTMTG VLSAANEKAVEMFIDEKISYLDIFKVVELTCEKHQNELRTSPSLEEIIHYDLWAREYAASLQNTSSFTPIPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 472 | 472 | 9.2E-284 | – | |
| PANTHER | 1 | 472 | 472 | 9.2E-284 | ||
| Gene3D | 68 | 224 | 157 | 5.3E-56 | – | |
| SUPERFAMILY | 75 | 224 | 150 | 2.96E-44 | ||
| PIRSF | 75 | 467 | 393 | 7.9E-170 | ||
| TIGRFAM | 76 | 458 | 383 | 1.4E-157 | ||
| Hamap | 78 | 461 | 384 | 45.404 | ||
| Pfam | 78 | 206 | 129 | 3.7E-46 | ||
| Coils | 129 | 149 | 21 | - | – | |
| SUPERFAMILY | 201 | 338 | 138 | 1.11E-57 | – | |
| Pfam | 220 | 303 | 84 | 4.6E-39 | ||
| Pfam | 335 | 456 | 122 | 1.5E-37 | ||
| SUPERFAMILY | 368 | 462 | 95 | 2.35E-28 | ||
| Gene3D | 380 | 463 | 84 | 2.3E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | Catalysis of the reaction: 2-C-methyl-D-erythritol 4-phosphate + NADP(+) = 1-deoxy-D-xylulose 5-phosphate + H(+) + NADPH. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | NADPH binding | Interacting selectively and non-covalently with the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions. |
Expression pattern of LotjaGi4g1v0234600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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