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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0235000 |
| Transcript ID | LotjaGi4g1v0235000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT2G36330.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|D7MMW4|CSPLJ_ARALL CASP-like protein 4A2; TrEMBL-Plants: tr|I3STP7|I3STP7_MEDTR CASP-like protein; Found in the gene: LotjaGi4g1v0235000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54915897..54918907) extracted from Lotus japonicus Gifu genome v1.2.
AACACTTTCACCTCTCTCCACTCCAAGAATCAAAAGCTATCAACGTGGCATGACCTAATTGGTTATGAGAATCTTATTGG AAGAATCTAACCCACGTGGCACTGTTCCTACACAGAATAACACAAACCTGAAAAAAAAAAAACCAAACACCCTAGTTTTC TTTTTCCACTTTCTTCACACTTTCTCACCATCCAAACACTCTTCTTCATTATTCCTCTTTTTTTCTCCTCTTTAAATTCC ACCAACGACACCGCGTAGACACAGTCCACTCTGCTGTAAAAACCATGAAGAGCACCTCGTCGAGGAACTCCGAGTCCTCG ACTCAGTTCGACTCGCCTCACTCCCCTCTCCGATTCCGCACCTCTCCGCTCTCCGACACCGGCGACCCCTTCCACTCGCC GGAGAACACCCCGGAAACTGACCACAGAGATAATAACTCCAGGGCCATCGTGATCATCGACACTTCCACTCAATACTCCA ACGCCGCGCCATCCTTGCCCAACACCGCGCAGAATGAGGCGCCGAGGGTGGCGGTTAACCGGGCTGTGAGGACGGAGCCT CCGCCGCCTACGATGAATCAGGGCCCGAAGACGATCGGCGCTAGAAGCCGTGAAGACGGCGGAGGTAGGGTGAGACCTGT GGCGGCGGTGGCGGTGTCGAAAAGGGAAGTGATGGCGAGGAAGGTTGCGTTAGGGTTCCGGTTGAGCGAGGTGGTGCTGT GTCTGATTTCTTTCTCGGTGATGGCTGCTGATAAGACTCAAGGTTGGAGTGGTGACTCTTTTGATCGCTACAAGGAATAC AGGTAATCAATTGAATTTTACCTTGTTCTATAATCAATTGGATTTTCAGATATTAGCTTATAGTTGTTGTAGTTCTATTT TGATTTTCAATTCAATTTTCATTGAAACCTTGTTGGATGCAACTTCATTGTGTAATTTGATCAAATTTTTGGTCTTCTGT GCTAGAAATAGAATTAATTGATGTCATTTGTTAGTGTTGTTGGGTTTTATTCTGTGTCCTTATATGGATTGTAATGTTGG GAAAGCACATTGATATGGCAGGTACTGTTTGTCTGTGAATGTTATTGCATTTGCATATGCAGCTTTTCAAGCATGTGATC TGGGCTATCAACTATTTGCTGGGAGACAACTAATCAATCACCACCTGCACTTTCACTTCGATTTCTTCATGGATCAGGCA AGTCAGAGGGACTCACTTCAATTCATAGCATGTTCGGATCAATTTCTCTTCATAGAATAGAAGCTTCAATTTATGGCATG TTTTTGTTCAATTTATGTGTTTTGTGTCTTTATTTGTTTGTTGAAAAGTTGACATTTTTTTGGTGAATTCTTGATGGGCA GGTTCTAGCATATCTTTTGATATCAGCAGCATCATCTGCAGCCAGCAGGGTTGATGACTGGCAATCAAATTGGGGAAAAG ATGAGTTCACTGAGATGGCTAGTGCTTCAATTGGATTGGCCTTCCTTGCTTTCATTGCCTTTGCTGTTAGCTCATTAATC TCTGGCTATAACCTCTGCACTATCTACCCCTAGAAATGGTACTAGTGTGTTTGGCTTTCCTCTGGAACTGAATAAAATGC ACATCTCAATGCTCACACGGAACAGAATTTTGTCAGGTTGAGTTCAATATGGATCGGCATTGATCTCAAGAGAGTCCAAA TACTCACTAAAACCTTATACCACTTGTCTGTCTATACTAGTTCTCCTTTATTTTATTTTCTTCTTTTCCTTACTGCTGTG GAGGAATGCATTCAAGAAAATGTTGATGCCCGTGAATTTTTATATTGTACAGACAGACTTTTACACACACACTTGCAGGA TTACTTGTCTTATATACAAGTGGAAAGATGGAGAAGGAGAATTTTGGATAGGTTTAAGTGTTTAACATACAATACAATGG TTTCTTTGTTTGTTTTAACGCTCTTGTATGAAATCATTTTTTATACCTCTTAGGTGCTACTTTAATGATTCAAGGCAGAA TCAACTATGGGAAGAAGCTTTTGTAAGTTGTTTCTGAGTTTCATAATTGATTCCAACGAAAGAGAAGTTAATCTAAACAT ACTAAAACATGAGGAAAGGCATTGCTGAACCAAAAATGTCCAAGGAAACCAGATGGTCTAGATTTTGGACTTGCCAATTG TTATGCTATTTTTTACTGTTTTGCCATATTTTTTTAAAGAGTGCTTTCTTCTTGTGGTTGGTTTGAATGAGCATTTCAGA ATTTCAGAGAATTTGAAGTGCATAATTATTCATTTGCAACATTCTTTGTTCGGATAGCTATTTATCCCCGTACCCAATGT TCCTTGTAAGGGCATCTTAAACAAACATCTCCATAGCAATGATAACATCATTCACCTTTTTTTCTAGCTTCCAACATTTG CTCAAATAACACTAGTGTCTCAATGGAACAATCACCTCCAGCAAACCTATGAATCATAGATGTCCAAGAATTACCATTTT CTCAAACATAACACGTGCATACCAAAACTCCAAGCTTAGAATCCAAATGGAATAATGCTGGAACTAAAATGCATGATTAA CCTGTAGAGCTGTTTTCCTTGTCGTCTTGTTGAAGTTGACTTTTTTTTTGGTCAATAAGTTGACTTGTTATGTGGGGGTA AGAATGAGGTAAATGGTATTTTATTGTAAATGGTCGGAAGGTGACTGGGTTAAGAAATGGAGAAAGTGCTAGTTTTCCCC CTTGGTCTTTTTTTGGTATATTATTTTGGTCAATCCCTTGGTCTTGAAAACAGATTGTATTAATGACCTAACAAAAGCTC GCCCCAACTAAATTGGGCTTTCCTCTCAATTTATTGTCTGATGATTCAACAAAGCACAATGTGATCATTGACAAAAAGAA AAGTCACAAAGAAATGAGTTTTGATGAGGCAGCCATACTTAACCCAAGACCACATGAGGACCATGATAGAAAAGTTTGGA GTTCAATTCATAGTGCTAACAAGAAGGTGGAGCTTGGAGTTGAAACCCTAA
CDS sequence (LotjaGi4g1v0235000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGCACCTCGTCGAGGAACTCCGAGTCCTCGACTCAGTTCGACTCGCCTCACTCCCCTCTCCGATTCCGCACCTC TCCGCTCTCCGACACCGGCGACCCCTTCCACTCGCCGGAGAACACCCCGGAAACTGACCACAGAGATAATAACTCCAGGG CCATCGTGATCATCGACACTTCCACTCAATACTCCAACGCCGCGCCATCCTTGCCCAACACCGCGCAGAATGAGGCGCCG AGGGTGGCGGTTAACCGGGCTGTGAGGACGGAGCCTCCGCCGCCTACGATGAATCAGGGCCCGAAGACGATCGGCGCTAG AAGCCGTGAAGACGGCGGAGGTAGGGTGAGACCTGTGGCGGCGGTGGCGGTGTCGAAAAGGGAAGTGATGGCGAGGAAGG TTGCGTTAGGGTTCCGGTTGAGCGAGGTGGTGCTGTGTCTGATTTCTTTCTCGGTGATGGCTGCTGATAAGACTCAAGGT TGGAGTGGTGACTCTTTTGATCGCTACAAGGAATACAGGTACTGTTTGTCTGTGAATGTTATTGCATTTGCATATGCAGC TTTTCAAGCATGTGATCTGGGCTATCAACTATTTGCTGGGAGACAACTAATCAATCACCACCTGCACTTTCACTTCGATT TCTTCATGGATCAGGTTCTAGCATATCTTTTGATATCAGCAGCATCATCTGCAGCCAGCAGGGTTGATGACTGGCAATCA AATTGGGGAAAAGATGAGTTCACTGAGATGGCTAGTGCTTCAATTGGATTGGCCTTCCTTGCTTTCATTGCCTTTGCTGT TAGCTCATTAATCTCTGGCTATAACCTCTGCACTATCTACCCCTAG
Protein sequence (LotjaGi4g1v0235000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSTSSRNSESSTQFDSPHSPLRFRTSPLSDTGDPFHSPENTPETDHRDNNSRAIVIIDTSTQYSNAAPSLPNTAQNEAP RVAVNRAVRTEPPPPTMNQGPKTIGARSREDGGGRVRPVAAVAVSKREVMARKVALGFRLSEVVLCLISFSVMAADKTQG WSGDSFDRYKEYRYCLSVNVIAFAYAAFQACDLGYQLFAGRQLINHHLHFHFDFFMDQVLAYLLISAASSAASRVDDWQS NWGKDEFTEMASASIGLAFLAFIAFAVSSLISGYNLCTIYP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 51 | 51 | - | – | |
| Phobius | 1 | 135 | 135 | - | – | |
| MobiDBLite | 1 | 39 | 39 | - | – | |
| PANTHER | 64 | 278 | 215 | 6.5E-99 | – | |
| PANTHER | 64 | 278 | 215 | 6.5E-99 | – | |
| MobiDBLite | 87 | 113 | 27 | - | – | |
| Pfam | 131 | 264 | 134 | 1.6E-31 | ||
| Phobius | 136 | 156 | 21 | - | – | |
| Phobius | 157 | 175 | 19 | - | – | |
| Phobius | 176 | 198 | 23 | - | – | |
| TMHMM | 177 | 199 | 23 | - | – | |
| Phobius | 199 | 218 | 20 | - | – | |
| TMHMM | 214 | 233 | 20 | - | – | |
| Phobius | 219 | 235 | 17 | - | – | |
| Phobius | 236 | 254 | 19 | - | – | |
| TMHMM | 254 | 276 | 23 | - | – | |
| Phobius | 255 | 277 | 23 | - | – | |
| Phobius | 278 | 281 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0235000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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