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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0238000 |
Transcript ID | LotjaGi4g1v0238000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Gibberellin-regulated protein 2; TAIR: AT5G14920.1 Gibberellin-regulated family protein; Swiss-Prot: sp|Q93X17|SNAK2_SOLTU Snakin-2; TrEMBL-Plants: tr|I3SJU9|I3SJU9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0238000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:55389367..55392056) extracted from Lotus japonicus Gifu genome v1.2.
GGGATATTTCAGACATGCATTTAATTTCATCAATCAACAACAATATGATGTCATTTGTTGGGTTGTTCCTGTAATTTCAT GTTGCAAGATATTAGCAGGGAGACCCCTTTTTACCTCTATATAAATGCTAGTAATGTGCAGAGTGAGATATAGCCACCAC CAACTCCACATACATTCTTGCTTGAGGTTGAACTTGAAGTTCCTTCTTTATTAATTCTAAAACTCTAGACCTGTTCTTCT GCAATGGCATCACGCGACTTTCTTGTTTTGGGGATGTTGCTTCTGGTGTGCCTTGCAAAGGTACTAACAAACATTAGCTA TTTTATCTTGCAGATATATACTCAACATATTAATTAAGTGCTCTGTTTAATATTTAATTTATATTCATTTGAAACTTACA GTGATCTTTTCTTTTTATGTTTCGTCGGTGTATTGTTGTGCAGGTTTCGTCTGATGTTAACATAGAAAAGGAAGAAGATG AAGAACTGCACTTACCTGATGAGCCGGTACATATATATATGCTCTGTTTTTTTTCCTCTGTATTTTTTCTTTTGGTAGAA TAGTAGCTCAGAAATCAGAATTATTTCATTACTTGACTAGTAATGTTTTTCTGGAATTTCTCTTCAGCTTACTGTGCGAG ATGGGAACCGAAGGCTAATGCAAGATATAGGTAAGTTAAAATAAAAGAAATTGCTGGTGTTGTCTACTTTATTATTATAG TCTTTGGATAAAATAATAAATAACTGAATGGTGGAGATTTTGTACATACTAATTGTAACTTACTCCCTCCGTTTCTTATT ATAATGTCATTTTTCAGAGTTTTTTTTTCCCTAAATATAAGTTCATTTCAAATATTTAAGTAGCATTGATTAGTTTTTTC CAAACTTACTCTTACATTTAAAACTTAATATTTCAGTTTTTCATATTTTAGTCTATTTCCAATGCCACTATCATTCACTA ACCTTAACTCTACAAATTGAAGTTTTTCATCTATTGGATTACTTAGTGGACTACAAGAGTATTAATTAAATGTATTATAT GGAGTACAATTCTAGAGATAGTGGGATATTAATTTGGACTGATAATTAGTAATTGAAGTGTTTATAAGTAAGGATAATTT AGTTAAGTTAATTAAAAAGTCTTACAAATTTATTGCACTTAACTAACTTTAACCACTTTTCTTAATCCTAGATATTTAGG TAAAATGACTTATAATAAGGAACGGAGGGAGTATAAATTTTAAGACTTCTGAAATTTTGCAAATGAATCCCCAATCTAAA GTGTAAGCATAGACCATTAATTTTGACATTGTGATATTGTTTCCTTGTATAACATTGTAATAACCTGAGGTGGGAGATGC ATATGCTGGTTCCAAAGTTGTCATTAAAGTCCACAACTCAAATTTTTGGACAGTGTCAAACTCAGCGTACATAGATAGTT GGAGAAATTATCGGAGTTGAACATAACAAAAGATGGTTGATCCCAAAGTGAGTAACCTGTCGCAAACATGCCGAGATTTT ATATGTGGAACATGAGCGTCATGCATAATGCATGAAGGTTTGCTCATTCCTCTTATGGAATCAACGCAGAACGATATTGA CCATTGCTATTAGGTATCAAGTTCCGATACGAAGAAATCACATCTTCGATGTGTCTCCTTGTGTCGAAGGAGTAAAGTAG TGTGGCCTTGTCATCCCGACCAAGTCTCCTTAATTTGACCCGCTCTGAATCCTTTTTCACTATTTGTCCTAGTGACCAAG GAGTAAAGAAACCTAAAATGATCATATCAAGGAGTGAGTTACACTGCTTTACTCATTGGCATGAGGGGATACAACAAAAG CATGATCTCTTCTCTAACCGAAATCCGATAGTGATTATTTTTTGCCGATTCAGCAAGGAAGAAGAGTATCAATTCTTTCG CACCTACACAATTCCCATGTCCTCACACCAATCCGATAATGATCATTTTATTTGTGCTAACTTTTTTTTTTCTTATCTCT TTCAATATTTAACTTATTATATCTTATTTTTTTTCTTTTCATCTCACTTTTGGTGCAGTTGATTTGTAGTGTGATTGAAG TATTATTGTTTTATGACATTTGGAACTATCCATCCATATAACGAAAATGAAATAAAGTATGGAAAACTAAGTTTTAATTT ATTTTTCTTGTATTGTGGACTAATTTTGCAGATTGTGGGGGATTGTGCAAGTCTCGGTGCAGTGTGCATTCTCGGCCCAA CTTATGCAAGAGGGCTTGTGGGACATGCTGTGTGAGGTGCAAGTGTGTCCCACCTGGTACCGCTGGCAACAGAGAACTCT GTGGGACTTGCTATACTGATATGGTCACCCATGGCAATAAGACCAAGTGCCCTTAATCAGAGATAAACAACCCCAGGCCC AAGCCCATATGTCATGAGTGATTGGGCCCCTTTGAATTCCTAGTGTAAATGGGTGTGTGTTGTTGACTACTTGTTATAAT CTTAGGCTTTTAAACTTAAGGGTGTGTGTTCTAGTTTTTGTCTAAGTTATGGTGCGGTATGTAGTAAAGTATGTTTTCAA CAGTATGAACTTTGTGCTTTTGATCGCTTAATATATTTGTTTCAGATTATCTCATCTTCATATTTTCTCCCAATTTTAAC CTGATCCAATTTTTACCGAAACTTCATTAAATTTTCTAATTTGATTGTGG
CDS sequence (LotjaGi4g1v0238000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCACGCGACTTTCTTGTTTTGGGGATGTTGCTTCTGGTGTGCCTTGCAAAGGTTTCGTCTGATGTTAACATAGA AAAGGAAGAAGATGAAGAACTGCACTTACCTGATGAGCCGCTTACTGTGCGAGATGGGAACCGAAGGCTAATGCAAGATA TAGATTGTGGGGGATTGTGCAAGTCTCGGTGCAGTGTGCATTCTCGGCCCAACTTATGCAAGAGGGCTTGTGGGACATGC TGTGTGAGGTGCAAGTGTGTCCCACCTGGTACCGCTGGCAACAGAGAACTCTGTGGGACTTGCTATACTGATATGGTCAC CCATGGCAATAAGACCAAGTGCCCTTAA
Protein sequence (LotjaGi4g1v0238000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRDFLVLGMLLLVCLAKVSSDVNIEKEEDEELHLPDEPLTVRDGNRRLMQDIDCGGLCKSRCSVHSRPNLCKRACGTC CVRCKCVPPGTAGNRELCGTCYTDMVTHGNKTKCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 22 | 22 | - | – | |
Phobius | 1 | 5 | 5 | - | – | |
Phobius | 1 | 22 | 22 | - | – | |
PANTHER | 3 | 115 | 113 | 5.1E-42 | – | |
PANTHER | 3 | 115 | 113 | 5.1E-42 | – | |
Phobius | 6 | 17 | 12 | - | – | |
Phobius | 18 | 22 | 5 | - | – | |
Phobius | 23 | 115 | 93 | - | – | |
Pfam | 55 | 115 | 61 | 2.5E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0238000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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