Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0238200 |
Transcript ID | LotjaGi4g1v0238200.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Calmodulin-binding protein; TAIR: AT5G62570.1 Calmodulin binding protein-like protein; Swiss-Prot: sp|C0SVV6|CB60A_ARATH Calmodulin-binding protein 60 A; TrEMBL-Plants: tr|A0A151SN52|A0A151SN52_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0238200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:55422110..55424715) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAACAGTAAGATATAATCTTCTGCTGATAATTTTAATTCCCATGGCTTAAATGTGGGGGTGCTTATGAAAAAAACTG GAGTGGATTAGGAAAAAATGCTTTAGCTGAAGGGTTTGAAATTGCTTTGCTTGAATCAAGTTTCTCAATGCATCTTTTTT TTTTTTTTTTTTTTTCTCACTTTTCAGGGCCTATGGAAAGGAAATGAATATTACTGAATCAAGAACTTTGCAGCTACAGT TTGAAAACGGCATTTGTCTTCCAGTATTCACTGGAGCTCGAATCGAAGGAGAGGATGGCTCCAATTTAAGGATAAGTTTA GTTGATGCCGTAACAGGGAAGGTTGTGAGTACAGGACCTGAATCTTCAGCTAAGGTCGAAATTGTAGTCCTTGAGGGTGA TTTTGAAGAAGAAGGTGGTATTTGGATGCCTGAAGAGTTCAAGAGCAATATTGTGAAAGAAAGGGAAGGAAAAAAGGCCC TCCTTACAGGAGATGTAATTTTTTATCTAAAAGATGGGGTTGGTGTGGTGGGTGAAATTTCATATACAGATAATTCAAGC TGGACAAGAAGTCGTAGGTTCAGGCTTGGGGCAAGAGTTGTGGACTACTTTGATGGTATTAGAATAAGAGAAGCAAAGAC AGAGTCATTTATTGTCAGGGATCACAGAGGAGAATGTGAGTATTTGTCTATAAATACATAAAACCCTTTTTCTGCTTATA TGCATGGAGATCTAATGTTTGCAGATGCTATTATAAATGAGTTTTTTAAGACTAAACCTTAGATGTCAGACAGGGAGTTT AGAACATGAAAGACTAAGAAGCAAAGAACAGTATAAAACAAATGTGATTCACATGAAAGTGACAGGGTTTTCTTGATTAG TATCTTTTTTTTGTGGAAATTATATTTACAAAAACCTGTATAAATATACTATATTACTGTTTACTGGTCCTTAACTTTTA TGATCTCATCGTATCCATATGTGATTTTCTTGTTGGTGCAAATGAATGAATTATTTATCTTTTGATGTGTACTTTTGGGA TTGCCTTTTTTTTGGAAAAAGTACTCAAAACTTGTGACATTTAATTACAGTAAATAATAAGAACATATTTGAGCTTTTCC AAGTCGTTTGTTAAAACGAGAGCGGCACTAGACGTAGTTTAACATTTAATTTTTGGCTGCAGTGTACAAGAAGCACCACC CTCCAAGTTTGTCTGATGAAGTTTGGAGACTGGAAAAGATAGGCAAGGATGGAGCTTTCCACAAGCGTTTGAGTCGGGAA AAGATCTATACTGTTAAAGATTTTCTCACACTTCTCAATCTGGATCCAGCAAAGCTGCGCAGTGTAATTATTAATTAAAT CGTATTTGAATATCTCTATATTTATATTTGCAGCTACTAGTCAATAGACCTGTCATTTTGTCTCATTTACTTCCAAATGG TTTTTGATAGATTCTGTCTTTTGAAAAGAATTTTTAGGAAAAACTTTCAGGGGAAAGTTTAGTTGTTTACTAGTTGTATC AAACCATTTAGATTAGCTTTGCCAATATCAAGTTTAACACCTCCAAGATAATGAACTTACACATCGATGAGCATTCTGTA TCACTCTTTTGGTTAACCAAAGTTTTGAATGCTAAGCATTCTGTGTCATTTCTGGAAATAGTGAACCACTGCTTGGTTTC TATCTGGGGCAAATGAATAAATTCTTTGCTTGGGAATATGCAGATACTTGGCACTGGGATGTCTGCAAAGATGTGGGAAG TGACTCTGGAACATGCTCGAACTTGTGTACTTGATATGACGAGGAACCTGTACTTCCCTGCTCATTCACAACAAACCGGT GTTGTCTTCAATGCAGTGGGACAAGTGACAGGACTGATCTCTGAAGGCGAGTATGCCGATGTAGATAAGCTGTCCGAAAC TGAAAAGGCAATTATCCTCTGATCACCTATTACTTCTTTACTCTCCTTCATTTCTCATTTCTCCTTATAACTTACCAATT TGATTTTCCACCATCAGGCTGATGCTCAAAACTCAGTTATTTCTGCACTTAACCAAGGGGATTTTGCCTCTTTTGAAGAT GAAGCCTCCCTCATCGATCGGTCTTCGCACTTAACTAATGCACTTTACTCCCCAAGCTCTCCCAGGACCGAGGGATCAAG TGCAAACAAACTTTTGGGTCCTCAAAAGCCTGGAGGGTTCGATTACACCCCAGCAAGTGCCTCTTCTCCAGATATCATGT CGTCCATTTATTCCGTTGCTGGAACTAGTGGCTTGGATGACTATGGCTTGTCTAGTTTTGACAGCATGAGCCTTAGATAT GATCAAGCTCTTGGTTTTCCAGTCTCCAACTCTTTGATCTGTGACACAGATTCAATGGCCCATGTTTTTAGTGATGAAGA TCATTTGCAGTTTTTCGATACTGATCTCCAATCACAGTTCCACATCCAAGCAGATTTACAGAGTGCTGTTGATAGCTTCA TGGTGGCACGCACTACGACCGTGGCCAATGGTAAAGCTCAGAGGAGATGGCGAAAGCTGTTCAACGTTCTGAAATGGTTC ATGGTGAGGAAACGACCAAACCAGAGATACAGGTAACTAGTTGTGA
CDS sequence (LotjaGi4g1v0238200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACAGGCCTATGGAAAGGAAATGAATATTACTGAATCAAGAACTTTGCAGCTACAGTTTGAAAACGGCATTTGTCT TCCAGTATTCACTGGAGCTCGAATCGAAGGAGAGGATGGCTCCAATTTAAGGATAAGTTTAGTTGATGCCGTAACAGGGA AGGTTGTGAGTACAGGACCTGAATCTTCAGCTAAGGTCGAAATTGTAGTCCTTGAGGGTGATTTTGAAGAAGAAGGTGGT ATTTGGATGCCTGAAGAGTTCAAGAGCAATATTGTGAAAGAAAGGGAAGGAAAAAAGGCCCTCCTTACAGGAGATGTAAT TTTTTATCTAAAAGATGGGGTTGGTGTGGTGGGTGAAATTTCATATACAGATAATTCAAGCTGGACAAGAAGTCGTAGGT TCAGGCTTGGGGCAAGAGTTGTGGACTACTTTGATGGTATTAGAATAAGAGAAGCAAAGACAGAGTCATTTATTGTCAGG GATCACAGAGGAGAATTGTACAAGAAGCACCACCCTCCAAGTTTGTCTGATGAAGTTTGGAGACTGGAAAAGATAGGCAA GGATGGAGCTTTCCACAAGCGTTTGAGTCGGGAAAAGATCTATACTGTTAAAGATTTTCTCACACTTCTCAATCTGGATC CAGCAAAGCTGCGCAGTATACTTGGCACTGGGATGTCTGCAAAGATGTGGGAAGTGACTCTGGAACATGCTCGAACTTGT GTACTTGATATGACGAGGAACCTGTACTTCCCTGCTCATTCACAACAAACCGGTGTTGTCTTCAATGCAGTGGGACAAGT GACAGGACTGATCTCTGAAGGCGAGTATGCCGATGTAGATAAGCTGTCCGAAACTGAAAAGGCTGATGCTCAAAACTCAG TTATTTCTGCACTTAACCAAGGGGATTTTGCCTCTTTTGAAGATGAAGCCTCCCTCATCGATCGGTCTTCGCACTTAACT AATGCACTTTACTCCCCAAGCTCTCCCAGGACCGAGGGATCAAGTGCAAACAAACTTTTGGGTCCTCAAAAGCCTGGAGG GTTCGATTACACCCCAGCAAGTGCCTCTTCTCCAGATATCATGTCGTCCATTTATTCCGTTGCTGGAACTAGTGGCTTGG ATGACTATGGCTTGTCTAGTTTTGACAGCATGAGCCTTAGATATGATCAAGCTCTTGGTTTTCCAGTCTCCAACTCTTTG ATCTGTGACACAGATTCAATGGCCCATGTTTTTAGTGATGAAGATCATTTGCAGTTTTTCGATACTGATCTCCAATCACA GTTCCACATCCAAGCAGATTTACAGAGTGCTGTTGATAGCTTCATGGTGGCACGCACTACGACCGTGGCCAATGGTAAAG CTCAGAGGAGATGGCGAAAGCTGTTCAACGTTCTGAAATGGTTCATGGTGAGGAAACGACCAAACCAGAGATACAGGTAA
Protein sequence (LotjaGi4g1v0238200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQAYGKEMNITESRTLQLQFENGICLPVFTGARIEGEDGSNLRISLVDAVTGKVVSTGPESSAKVEIVVLEGDFEEEGG IWMPEEFKSNIVKEREGKKALLTGDVIFYLKDGVGVVGEISYTDNSSWTRSRRFRLGARVVDYFDGIRIREAKTESFIVR DHRGELYKKHHPPSLSDEVWRLEKIGKDGAFHKRLSREKIYTVKDFLTLLNLDPAKLRSILGTGMSAKMWEVTLEHARTC VLDMTRNLYFPAHSQQTGVVFNAVGQVTGLISEGEYADVDKLSETEKADAQNSVISALNQGDFASFEDEASLIDRSSHLT NALYSPSSPRTEGSSANKLLGPQKPGGFDYTPASASSPDIMSSIYSVAGTSGLDDYGLSSFDSMSLRYDQALGFPVSNSL ICDTDSMAHVFSDEDHLQFFDTDLQSQFHIQADLQSAVDSFMVARTTTVANGKAQRRWRKLFNVLKWFMVRKRPNQRYR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 7 | 476 | 470 | 5.7E-150 | – | |
PANTHER | 7 | 476 | 470 | 5.7E-150 | ||
Pfam | 17 | 300 | 284 | 3.1E-117 | ||
MobiDBLite | 323 | 354 | 32 | - | – | |
MobiDBLite | 323 | 338 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Calmodulin binding | Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. |
Expression pattern of LotjaGi4g1v0238200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…