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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0239300 |
| Transcript ID | LotjaGi4g1v0239300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|I3S5L9|I3S5L9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0239300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:55575941..55577823) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAAAACTTATTTAAATTAAAAAAACAATATAATTGGGCCTCACCTATCTATCTAAGACCCACAACACCGACAGA TTGTACTATAAAATCGGGGGGAAGCTTAAGAATTTTAATCATACAAAATTAGGGTTTCTAATCATGAAACTTGGTATCGA GTTTCTCCCATGGGAAATTCAAGTAGAAATCTTGTCGTGGCTTCCGGTGAAGACCCTCATGCAATTCAAGTGCGTTTGCA AATCATGGAAATCACTCATCTCTAACGACAAATTGTTCAAAAAAAATCACCTGCACAAATCGGCCAGAAACAACCACTGC CTCTTCACCCTACAGGTAGGCCGGGGCTGCTACCACGATGAAGACGAGGACCACTGCCTCGTTCCGTGCCCGGTGCGTCG TTTGGTTGAGGATCCGTCATCCTTGATCGATGAAGACGGGTGCTGCAATTTGAAGGGCAAGTACTGGCTCATTGACTCAT GTAACGGCTTGGTCTGTTTTCGCTACACTTGGGGTTATACTTGGGGTTATGATTACCTTCAGGGCAGGTGCCGCTTCCGG TTCTGGAACCCGGCTACACGCTTGTGGTCTAAAAAGTCGCCAACCCTTATCATGGACAGAATGCGCTTTGGATTCGGCTA TGATGATTCAAGTGACACTTATAAGGTGGTGGGAATTGCGATTTCTCTTCGGGGCCAAGAGTGGCATTGGGAGACAGCGG TTTATTGTATGGGTGATAGTTGTTTGAGAGAGATTTCGAGTAAACCTAGTTTGGGACTTTCGCCAATGGGACACACTGGC ATTGGACTGTTTGCGGGTGGTTGTCTTAATTGGTTAGCAGTTGAGGAGTTGAAAAGGCCTAAACAAAACCTCCAGCGGTT GCCATTGGTGATTCTTTCATTTGACATGCATAAAGAGACTTATAGATCTTTTTCATTGCATGAAGATATTAGTGTTGTTA TACACACCTTAGTGTTTTGGGAAATTGTCTGTGCCTTTTTCAAGACCGTAAAGGAACCCATTTTGATGTGTGGCAAATGA GAGAGTACGGTGTTCGAGAGTCTTGGACTCGATTGGTGAGTGTCAGCTATGAACATCTTGAAGCTGATAACTGTTCAATG CTTAGGTCGTGGCCGCTGATCTTCTTGGGTGAAGATGGTGACATCCTAATGCTCATCAGAAATAAAAATCTGGATGTTAT GTTGTGTAATCTAAGTGATAATAGTGTGAAATATGTTCAACGTCCTGCCAACAAACATTGGAGTGGGCCCATGGTTATGT AGAAAGTCTAGTTTCACCTTATTAAGATTAAGGTTATTGTCATGATTTGGGTTGAAGGTTGGACCTGTACTGGTTTGTTT TCGAATCTGATCTGCTGTGTATGCTGCTAAATCATCACTGCTCATTGGTTTTTTGCTGCTTTTTTTTTTTCTTTTTGTGG TGGATGTTTTTTTTTTTTTGCTGTTTGATTGTTTTGACTCGCTGGATTGGGGCTGCCTTTGCGTTTTCTTTGGGTGGATG TAGCTTCTGTTCTTGCTTTTTTCTCCTTTTATTGTTCCTATGTATCTTTGTTTACTTTATTTCTTTCTAGCTTGCTGTCA AGGCTTTGGCCTTTTTATTTTCTTGTCATTCCACTGATGCAGCGCTTTGTATTGTTTTAATTTATGCTTTTTCTTCATGT AATCCCTTTTCGGTGCTTAAACTCTTGCCTACTTCATGAGAAGGTTGTTCTCATGGCTTTTCTCATCAATAATATTTCTA TTTTCTTGAAAAAAAGATTAAGGTTTTGTTTCTTGATAAAGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCATTTTCTAAT
CDS sequence (LotjaGi4g1v0239300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACTTGGTATCGAGTTTCTCCCATGGGAAATTCAAGTAGAAATCTTGTCGTGGCTTCCGGTGAAGACCCTCATGCA ATTCAAGTGCGTTTGCAAATCATGGAAATCACTCATCTCTAACGACAAATTGTTCAAAAAAAATCACCTGCACAAATCGG CCAGAAACAACCACTGCCTCTTCACCCTACAGGTAGGCCGGGGCTGCTACCACGATGAAGACGAGGACCACTGCCTCGTT CCGTGCCCGGTGCGTCGTTTGGTTGAGGATCCGTCATCCTTGATCGATGAAGACGGGTGCTGCAATTTGAAGGGCAAGTA CTGGCTCATTGACTCATGTAACGGCTTGGTCTGTTTTCGCTACACTTGGGGTTATACTTGGGGTTATGATTACCTTCAGG GCAGGTGCCGCTTCCGGTTCTGGAACCCGGCTACACGCTTGTGGTCTAAAAAGTCGCCAACCCTTATCATGGACAGAATG CGCTTTGGATTCGGCTATGATGATTCAAGTGACACTTATAAGGTGGTGGGAATTGCGATTTCTCTTCGGGGCCAAGAGTG GCATTGGGAGACAGCGGTTTATTGTATGGGTGATAGTTGTTTGAGAGAGATTTCGAGTAAACCTAGTTTGGGACTTTCGC CAATGGGACACACTGGCATTGGACTGTTTGCGGGTGGTTGTCTTAATTGGTTAGCAGTTGAGGAGTTGAAAAGGCCTAAA CAAAACCTCCAGCGGTTGCCATTGGTGATTCTTTCATTTGACATGCATAAAGAGACTTATAGATCTTTTTCATTGCATGA AGATATTAGTGTTGTTATACACACCTTAGTGTTTTGGGAAATTGTCTGTGCCTTTTTCAAGACCGTAAAGGAACCCATTT TGATGTGTGGCAAATGA
Protein sequence (LotjaGi4g1v0239300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLGIEFLPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQVGRGCYHDEDEDHCLV PCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGLVCFRYTWGYTWGYDYLQGRCRFRFWNPATRLWSKKSPTLIMDRM RFGFGYDDSSDTYKVVGIAISLRGQEWHWETAVYCMGDSCLREISSKPSLGLSPMGHTGIGLFAGGCLNWLAVEELKRPK QNLQRLPLVILSFDMHKETYRSFSLHEDISVVIHTLVFWEIVCAFFKTVKEPILMCGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 48 | 47 | 12.465 | ||
| Gene3D | 5 | 45 | 41 | 3.2E-10 | – | |
| SUPERFAMILY | 5 | 54 | 50 | 1.44E-12 | ||
| SMART | 8 | 48 | 41 | 9.1E-10 | ||
| Pfam | 8 | 47 | 40 | 8.6E-10 | ||
| PANTHER | 9 | 268 | 260 | 2.1E-34 | – | |
| PANTHER | 9 | 268 | 260 | 2.1E-34 | – | |
| TIGRFAM | 111 | 269 | 159 | 1.3E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0239300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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