Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0240800 |
| Transcript ID | LotjaGi4g1v0240800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|I1MVF8|I1MVF8_SOYBN BHLH transcription factor; Found in the gene: LotjaGi4g1v0240800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:56794503..56797114) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAGTGACTCAGCTTCGGCACCGAAAAGCAATAATATATCTCTGAATTACGAAAGGACGAGTGTTATTCTTCCTATCC TTGTCTAAACTACACCTGTTAATTGCATTTCGGTGACCCAAAGTTATCATGGAGGACAATCACACCCCAATGGACGCATC AGTAGCTAGCTGGCTATCTGATTTCGTAAGGAAGTCCTTTTCATCCACTCTTCCAATCTTCAAATCACCAAATTGTATCA AATTTGTTTAACCTTTGACTCATTTTTTCTTTGTTTAATTTTTTGCAGGAAATTGATGATCACACTCTATTTCCTGATGA GTGCCACCACCTGAACTTGCTTGTTGTTGATGACAAAGAGTTTCTATCAAATGATGACATAGCAAGTGTCCTGCAAAAAC AGACACTTCAACAATCACTATCTTCAGATTGCACTTCTATAACTCTGAGTAACTCGTTCACTGATGAAACTAGCTTTGAC TTTGCTGATACACCTTCCATCACTGAAAACTTTTCACCAGAACTTTCCCCTTCATCCTCCATCTCCTCTTTCAAGTCTCA GATTCTGTTTTTGGACAACACAAACTCATCCCCTGCCACCAACACCACCACACAGATTTCTGGGTTTGACTCCAGCACCT TGAACCCAAAACAGAATGAAACTGTGTTAGTGCCACTGCCCCAGTTGGGAAACACGCATATCTCAACTCAAAATTCAAAA GGGTCATCGAAAAATCAAAACTTTGAAACGAAATCCTCACATGGAAAGAGGTCTCCAGCTCACCATCATGATCACATCAT GGCAGAGAGAAAGCGCAGGGAGAAGCTCAGCCAGAGCTTCATTGCTCTCGCAGCACTTGTTCCTGGCCTTAAGAAGGTAC ATTAAATTGAATCTAAGGTTTGATCAAACTTTCAAATTCATCCTGAAAGTGTGGAACTTCCTGATGAAAGTGAGGGACAA TACACTAACGAGTTCCTCCATAAATTTAGAAAATACTCATGGGCTCACTCATTGTGTATAAAATGTTGATCCCATGTAAT TAGAAAAAAACATATATAAAGACTAGCTTCACCGACATTTTAGACCATTAGTGATCGTAAAAATATTTTTTCTTCTCCTC ACTAACTTGTGAGGATGTTAGAGTATAATATAAAACCATTAAAGTGGCCCTTACCCAATAGCTTAAGCTTTTGGGATTAA GTGGTTGTCTCACATGGTATTAGAGCCTCTATGACCGAAAGGTCTAGAGTTCGATCCTTGCTCCTCTCACTTTCTAATTA AAAAGTGAAATTTAATTAAGCACATGGTAGGTGGGCCTGTGTCTTTATCCACGCTTCAAGCCCAAAGGGCTCTTGCGTGA GGGGGCATGTTAGAGTATAATATAAAACCATTAAAGTGGCTCTTACCCAACAACTTAAACTTTTGGGATTAAGTGGTTGT CTCACAGAGGACCCATGCCTCTTATTGTGAATGAATGTGATTGTCGCAGCTGAAATCATTGTCACGTGGCGGTTTTGGAA ACCTCCAAAACGTTGACATCACGACCGAAATCACTGTGACCTTGATTTAGAACCTTGAATTGCAATTATTGAATTATACG ATTTCACCACTATAGTCAAATTTTGCTTTGTCCATATGAATTGTTAAACAAATCGTTTATTCTGATTAATTGTGTGAAAA ATCTGTTTATTCACACAGATGGACAAGTCCTCTGTATTAACAGACGCAATCAAATATGTGAAAGAGCTAAAGGAGCGTTT GGCGGTGCTGGAAGAACAGAGCAAGAAAACAAAGGTTGAGTCGGTAGTGGTTCCAATCAACAAGCCTGCGCCAGAGTTGT GTGGCGGCGATAATGATGATTCCTCATCATGTGAGGAGAGTGTCGAAGCCGATGAATCACTGGTGCAAGTGGAATCAAGA GTGTCAGAACAGGATATGCTGATTCGGATCCTCTGCAAGAAACAAAAGAGGCTGCTGACAAAAATTCTCGCTGAGATTCA AAGTTTTCAACTGTCCGTTGTCAATAGCAGTATCTTACCTTTTGGGGATTCTATGGACATTACTATTATTGCTCAGGTAA AGGACAAACTATCCCACTGATACAGATGCATTTGATTACTTGAAGTCCTTTCTAACTTTTTTTTCAATAATGTTGTCTTC ACACTTCAAAAGATATTATTTGTGATCGGATAGGAAAAGTCCAGAGAAATATGAGAAAAGAATAAGATAAAAAAGAAAAT ATAGAGTGAATAAATCATAACTTTTTATTTTTTCTAGTTGTCTGCGTCCTTTGTTCAGTTTGTTGTTCATCAATTTTCTC TTACTATTTGAGTTTAATTTGAGCATTATTATTATTTTGCAGATGGGTGAGGGTTACGACTTGACTGCAAAGGAACTTGT CAAGAAACTACGGGTAGCAATATTGAAGTTTATGTCATGACACCAATATGGCACAAGATTATAGCATTTGTGTTTTGTTT GTTTGATGGTATTTTAAGTTGAAAGAATATGAGGAGAATTATGCATGAAAAATACTTTTTATCTCTTTGGATCGTCAAGG AAATTGAGAGGAAGGGATTGAAAAGCGCGAGACCCATCTGATTTCTGTGCAC
CDS sequence (LotjaGi4g1v0240800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGAGAAAGCGCAGGGAGAAGCTCAGCCAGAGCTTCATTGCTCTCGCAGCACTTGTTCCTGGCCTTAAGAAGAT GGACAAGTCCTCTGTATTAACAGACGCAATCAAATATGTGAAAGAGCTAAAGGAGCGTTTGGCGGTGCTGGAAGAACAGA GCAAGAAAACAAAGGTTGAGTCGGTAGTGGTTCCAATCAACAAGCCTGCGCCAGAGTTGTGTGGCGGCGATAATGATGAT TCCTCATCATGTGAGGAGAGTGTCGAAGCCGATGAATCACTGGTGCAAGTGGAATCAAGAGTGTCAGAACAGGATATGCT GATTCGGATCCTCTGCAAGAAACAAAAGAGGCTGCTGACAAAAATTCTCGCTGAGATTCAAAGTTTTCAACTGTCCGTTG TCAATAGCAGTATCTTACCTTTTGGGGATTCTATGGACATTACTATTATTGCTCAGATGGGTGAGGGTTACGACTTGACT GCAAAGGAACTTGTCAAGAAACTACGGGTAGCAATATTGAAGTTTATGTCATGA
Protein sequence (LotjaGi4g1v0240800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAERKRREKLSQSFIALAALVPGLKKMDKSSVLTDAIKYVKELKERLAVLEEQSKKTKVESVVVPINKPAPELCGGDNDD SSSCEESVEADESLVQVESRVSEQDMLIRILCKKQKRLLTKILAEIQSFQLSVVNSSILPFGDSMDITIIAQMGEGYDLT AKELVKKLRVAILKFMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 60 | 60 | 1.2E-13 | ||
| ProSiteProfiles | 1 | 43 | 43 | 15.199 | ||
| PANTHER | 1 | 176 | 176 | 1.0E-72 | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| PANTHER | 1 | 176 | 176 | 1.0E-72 | – | |
| CDD | 1 | 48 | 48 | 5.01359E-11 | ||
| SUPERFAMILY | 1 | 62 | 62 | 5.5E-15 | ||
| Phobius | 1 | 25 | 25 | - | – | |
| SMART | 1 | 49 | 49 | 3.5E-11 | ||
| Pfam | 2 | 44 | 43 | 5.8E-9 | ||
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 25 | 4 | - | – | |
| Phobius | 26 | 177 | 152 | - | – | |
| Coils | 33 | 60 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0240800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…