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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0241100 |
| Transcript ID | LotjaGi4g1v0241100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase (DUF239); TAIR: AT2G35250.1 NEP-interacting protein, putative (DUF239); Swiss-Prot: sp|Q9H4D5|NXF3_HUMAN Nuclear RNA export factor 3; TrEMBL-Plants: tr|I3SWN5|I3SWN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0241100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:57803765..57808192) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAACGTAGCATTGCTTCACTAAAAATTATGGCATTTTTTCTCTTTCTAATTATTAGTTTGTGTGTACGATGCTATGA AGTTGATGGTGCAAGAATCCAGGTATGATAATCACAACTTTTGTTCTATGACGTCTTCAATTGACTATCAAGGCATTTTT TTTAGGAATTCATTCAACAATCCGGATCACTTCTCTCTCTAGAATATTTCCTCTGCCTTCTATCCTCTCTTTCGGCCTGA CCTTGAACGCCTTGGGTGGCCGCCGTTGCGCCGTGGCAACCCCCTCTGTTCCTTTCTATCTATTTAGTTCCTCTTTCCCT CTATCTTCAAATCTGGTTTTGAGATCCAACGATCTAGGTTTTGGCAGTTCTGTCCTCTGGCCTCCTCAGATCTGGTCTCC TCAGATCGCGTTTTGGTCCTCTGGTTTTCCAACGGTCGTCTTCTTCCGCCCTGTACTTTTCTCGGTGCGCCCTGTCTTTC GTTCGTGCTCGGTTTGTGGGTCTTTGGTCCTGGCCGTCAGCAACGCCACCAAGGGCTCTCCCGACTCCTTTTGTCGTTGC TTCTCTCTTGTGCTCCATTAGTGTCATGGATTAAGTGGTGGTTCTAGTTTTCTGTTGGGGTTTGGCTGTTTCTGTAAGGT TTTGGATTTCGATCATGGGGCTTTTGATGGTGGCTGGGTGCCTGCGATGACTGAGCTTGTGGATTGAAGCTCTCGTGGTG GCTGTTGGTGCCAGTTTGGTGTGGGTTTTTGGTTTTTGCACAACGAGACAGTGATGTATCTTGGAGTGGAGTTTTAGTTG ATCTTCTTCTCTGTTGAGTGGTTTGTCAAGGGTGTTGAGGCTACGGTTCCCTTACGGCCTCAACGTTTTGACGGTCGCTC TACGGTGGTGGTGGTCTTGTGGCTGTATTGGAGCTGCTCGTTGCCGGTTGCTGTAGTATCTCCTGGGTTTTTATCGCTTT TATGCTTTATTTTATGTTTGCTTATGTTTTCCTTAGTTTCCAGGTCTCAACTACTGGCTTTGGTAGGGTGTTTGTTGTTG GGGATTTCAGGTTTCTTGTTGGGTTTTGTTCTGAGCTGGTGGGGAGTTTTTTGAGAGATTCTTGGGAGGTTTTGTACTGA GCTTGTAGGGATTTTTAAGAGATTCTTGGGAGGTTTTGCTGTAGTGGGAGGTTTTGATGTTGCAGTTGAGATTTTACTGG CTGTTACTAGTTTGGTCACTGTACCCTGTTGAGAGGGGATATATCTCAACTTCCTATATATATATATATATACACACTTC ATTTTCGAAAAAAAGGTATGATTTTTTTAATTTTCATTTGGTTAAAAATTTGGCGTCCAATGCAGGATGATTTTGATTGT GTTGATCTGTACAAGCAACCTGCTTTTCAACATCCTTTACTGAAAAATCACAAAATTCAGGTAAACTATCTTTTGTGCTT AAACCATTTTTAAGGTTAATTTTTTCAATCTTACATAAAAGATAATATCATTTGACATTACTTAAAAAAAGATGAAAGTT TAATCAATCCCGGTAGTTGTCATTTTTTATTCACATTTTTTCAAATTGAATCTAACATTTTTTTTTCTTATTGTAATAAA GCTTTTTCCAACTTTTACGATGAGTACCATGCAACTTGGTAGAGATAATAAAGATAAGCATTCCAGAAAAAGATGTCCAA TGGGAAAAGTGCCTATTTTCAAGACCAAGATCAGGGAGCAGAAGATTAATATGTCTACTTCAAAATCACAACTTGATGGG TTAAATCAATATTCTCAAAGTCGCCCTAGGCATCATGTAAGTCAGTTCAATTAAAAATATTTGGTCTTTAAACTTTTTAT TTAACGAGTTACTATTATAACTTTTATGTAGAAACATTACTTTAGTTTTGCTATTTTTCTTTAAAATTTATATTTATAGT TCTAAATTAAAAACATATTTCTTTGCAAAAACAAATAAATGGGCCAAATATCACAAATTTTAATAATGTTTATCTCATGT TTATTGAATATATTAGAGTAATTATATAAAACTTGTAAATGTGTTCATCACTTGTCAATAATATCTTATTATTTTCTAGT TTGCTACCCTTAGCACAACCCAAAATATGATGTTTCATGGAGCAAGTGCACGAGCTGCCGTGTATAACTTATCGCTTCAA GCAAACCAATATAGCTTATCTCAAATTTGGATTCAGGGTGGTCCACCTACTGATCTTAATAGTATACAAGTTGGATGTGG TGTAAGTTAACTTTTTTCTTGTTTATACAGTTTTTATTTCTCTTTCATGACATTGTAGAAATTTGGAAAACGTTGTATTT ATGATACTTTATTATATTTATTCTATGTCCAGTCTTTTTAAATATATTATTCTTGTCGTGACAGGTTCATCCTAACTTAT TTGGGGACAATCAAGTGCGTTTGATCGCCTATTGGACAGTAAGACTCTAAAATTAATGGATTGTATTTACTTCAAAAAAA ATTAATGTGATTATTCTAATTTAGATAAATATATGCAGGCAGATGGCTTTAGAAAAACTGGATGTTTTAATCATCAATGC CCAGGTTTTGTGCAAGTCCATCGAGAATTTACCTTTGGAGAAATTATTGGTCCTACTTCTACCATCGGATCGGATTATAA AAGTTTATATCCTTTCAAAGTCAAACAAGTAAGTAAATTTTAACGCATAAGAGTGCACGAAATTGATAATCTCTTCACCT TCATGAAAGTACAAGCCCTTTAAAATCTGTTACAAAAAATATAAATTTAAGTCTACCGTAAATATATATAAAATAAATTA TTCCATCTAGTGCTGTAAAAACTTAATAACAAAGTTAAAATTACTCAAAAATAAGAATAAATAAACTTAATAATAAATCT TCTAATAAATTTTTCGTGAGGAAATCTTTTTTGGGGATGTTTACTGTTTGGGAAGCGCAATTTTTTGTACTTTATCTACC ATGAGAACCTTTACCTCATGCTTGAATCTTTATCAATAATACTTTCATTTTCAATTTTTTTTATCTATTAAATAAATTTA TTTACTTTATATTTTAAATAATTGTTTTTTTTAGAAAGATAAATGTATATTAGCAAAAGGTTTGAGAGTTTAAACTCTCA AGCAGAAATCATAAATCTTATTTTTTAAATATTTTTATAAGATATTTAGAACATGATAAAATGAGAAATAACATCTAAAA TAGATTAAAAAAAATATAGAAAAGTTGTTAGTATTCATATTTTTAGTTCATTTATGCTTCATAAAATATTACATTTTCAT TAGATATAGGGATGGCAATGGGTCGGGTAGGGTGCGGGTTTTGCCAAACCCAAACCCAAACCCGAAATCAAAAACCCACA CCCGCACCCGCACCCGAACCCGAAATGGGTGGTGAACTTAAACCCACACCCGAACCCATTGGGTTTCGGGTTCACCCGAC CCGTACCCACACCCGCACACAACCTCAAACAAACAGTTGAACTCGGAAACCCGACCTGAAAAAGACTGTGAAGAGAGCTA TATTATGTAATGTAACATTGTAATTGCCATGTTACTGTTAAATTAATATGCAAGATGCTGCATATATTGTACTGCATAAG CAGAATACTTAGGTTTCACTTATACAGATCCGGGTTCGGGTAGGGTTCGGGTGCGGGTTTGGCCAAACCCAAACCCGAAC CCGAAAGTGATCGGGTAAAACCCGAACCCGAACCCGAACCCATTTAACTCGGGTTTTCACCCAAGAAATCGGGTCGGGTC GGGTCGGGTGCCCATGGGTTCGGGCTTCTCTGCCATCCCTAATTAGATATGATTAATAATTATCATTTGCAGACAAATTA TTTTATCTCTTTTAAATGTTTGAATATTTGTAGGATCAATCCACAGGACATTGGTGGTTAATTGCTGGTAGGGGTTCATG GGCAGTTGGTTATTGGCCCAACCAATTACTTACTCACTTAAGTCATGGCTCATATGTGATAAGATACGGTGGTGAAACAT ATGCTTCGCCCAATGTGATGAGTCCCCCAATGGGTAGTGGGAGGTTACCTCGGGAGTTATATAAAAATTCCGCTTTCATG TCAAATCTGGAGATCATAGATTCAAACTACAATGAAGTTAGGGTAAATCCTAAATATATGAAGTCAAATTGCGATACTAC ACCTAATTGTTATGACGTGCAATACCATGGATATGAAGGAATTGTGTTTGCGCAAGCTTTTCTCTATGGTGGACCAGGTG GACAATGTGGTATATGATTATATCAACAACTTTATTTAATAAAATTTTGTTCATTATCGATAAAGATTCCTGAAACTTTG TATGATTAAGCTTCAATATATACTGAAATAAAAATAAGAATAGTTTTATTAACTTCTCGGGAAGTGTCCTTTTTTGTTTC CTCAACCCACCGCAAGAGAAGAATCACA
CDS sequence (LotjaGi4g1v0241100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTTTTTCTCTTTCTAATTATTAGTTTGTGTGTACGATGCTATGAAGTTGATGGTGCAAGAATCCAGGATGATTT TGATTGTGTTGATCTGTACAAGCAACCTGCTTTTCAACATCCTTTACTGAAAAATCACAAAATTCAGCTTTTTCCAACTT TTACGATGAGTACCATGCAACTTGGTAGAGATAATAAAGATAAGCATTCCAGAAAAAGATGTCCAATGGGAAAAGTGCCT ATTTTCAAGACCAAGATCAGGGAGCAGAAGATTAATATGTCTACTTCAAAATCACAACTTGATGGGTTAAATCAATATTC TCAAAGTCGCCCTAGGCATCATTTTGCTACCCTTAGCACAACCCAAAATATGATGTTTCATGGAGCAAGTGCACGAGCTG CCGTGTATAACTTATCGCTTCAAGCAAACCAATATAGCTTATCTCAAATTTGGATTCAGGGTGGTCCACCTACTGATCTT AATAGTATACAAGTTGGATGTGGTGTTCATCCTAACTTATTTGGGGACAATCAAGTGCGTTTGATCGCCTATTGGACAGC AGATGGCTTTAGAAAAACTGGATGTTTTAATCATCAATGCCCAGGTTTTGTGCAAGTCCATCGAGAATTTACCTTTGGAG AAATTATTGGTCCTACTTCTACCATCGGATCGGATTATAAAAGTTTATATCCTTTCAAAGTCAAACAAGATCAATCCACA GGACATTGGTGGTTAATTGCTGGTAGGGGTTCATGGGCAGTTGGTTATTGGCCCAACCAATTACTTACTCACTTAAGTCA TGGCTCATATGTGATAAGATACGGTGGTGAAACATATGCTTCGCCCAATGTGATGAGTCCCCCAATGGGTAGTGGGAGGT TACCTCGGGAGTTATATAAAAATTCCGCTTTCATGTCAAATCTGGAGATCATAGATTCAAACTACAATGAAGTTAGGGTA AATCCTAAATATATGAAGTCAAATTGCGATACTACACCTAATTGTTATGACGTGCAATACCATGGATATGAAGGAATTGT GTTTGCGCAAGCTTTTCTCTATGGTGGACCAGGTGGACAATGTGGTATATGA
Protein sequence (LotjaGi4g1v0241100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFFLFLIISLCVRCYEVDGARIQDDFDCVDLYKQPAFQHPLLKNHKIQLFPTFTMSTMQLGRDNKDKHSRKRCPMGKVP IFKTKIREQKINMSTSKSQLDGLNQYSQSRPRHHFATLSTTQNMMFHGASARAAVYNLSLQANQYSLSQIWIQGGPPTDL NSIQVGCGVHPNLFGDNQVRLIAYWTADGFRKTGCFNHQCPGFVQVHREFTFGEIIGPTSTIGSDYKSLYPFKVKQDQST GHWWLIAGRGSWAVGYWPNQLLTHLSHGSYVIRYGGETYASPNVMSPPMGSGRLPRELYKNSAFMSNLEIIDSNYNEVRV NPKYMKSNCDTTPNCYDVQYHGYEGIVFAQAFLYGGPGGQCGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| PANTHER | 10 | 360 | 351 | 2.5E-120 | – | |
| PANTHER | 10 | 360 | 351 | 2.5E-120 | – | |
| Phobius | 12 | 15 | 4 | - | – | |
| Phobius | 16 | 363 | 348 | - | – | |
| Pfam | 25 | 117 | 93 | 3.4E-13 | ||
| Pfam | 135 | 357 | 223 | 3.0E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0241100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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