Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0241300 |
| Transcript ID | LotjaGi4g1v0241300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase (DUF239); TAIR: AT2G35250.1 NEP-interacting protein, putative (DUF239); TrEMBL-Plants: tr|I3SWN5|I3SWN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0241300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:57859096..57863172) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAAGGTATATTATTATTAAGAGATGAAAGTCAATAATATAGACCATTTAACTATACGTCAACGATGATGATTATATC TAACTTAGATCAATTCTGGCCATGTATATTAAATTGAAATTTTTAATGTTATGCTCCCAAATGAATATATATATATATAT ATATTATATATATATATAAAAGCACAATCACATAGCTGATATGTATGTCCCAAAACGTAGCATTGCTTCACTAAAAATTA TGGCATTTTTTCTCTTTCTGATTATTAGTTTGTGTGTACGATGCTATGAAGTTGATGGTGGAAGAATCCAGGTATGATAA TCACAACTTTTGTTCTATGACGTCTTCAATTGACTATCAAGGCATTTTTTTAGGAATTCATTCAACAATCCGGATCACTT CTCTCTCTAGAATATTTCCTCTGCCTTCTATCCTCTCTTTCGGCCTGACCTTGAACGCCTTGGGTGGCCGCCGCTGCGCC GTGGCAACCCCCTCTGTTCCTTTCTATCTATTTAGTTCCTCTTTCCCTCTATCTTCAAATCTGGTTTTGAGATCCAACGA TCTAGGTTTTGGCAGTTCTGTCCTCTGGCCTCCTCCGATCTGGTCTCCTCAGATCGCGTTTTGGTCCTCTGGTTTTCCAA TACGGCGGCGGCGGTCGTCTTCTTCCGCCCTGTACTTTTCTCGGTGCGCCCTGTCTGTCGTTCGTGCTCGGTTTGTGGGT CTTTGGTCCTGGCCGTTAGCAACGCCACCAAGGGCTCTCCCGACTCCTTTTGTCGTTGCTTCTCTCTTCTGCTCCATTAG TGTCATTGATTAAGTCGTGGTTCTAGTTTTCTGTTGGGGTTTGGCTGTTTCTGTAGGGTTTTGGATTTCGATCATGGGGC TTTTGATGGTGGCTGGGTGCCTGCGATGACTGAGCTTGTGGATTGAAGCTCTCGTGGTGGCTGTTGGTGCCAGTCTGGTG TGGGTTTTTGGTTTTTGCACAACGAGACAGTGATGTATCTTGGAGTGGAGTTTCAGTTGATCTTCTTCTCTGTTGAGTGG TTTGTCAAGGGTGTTGAGGCTACGGTTCCCTTCCGGCCTCAACGTTTTGACGGTCGCTCTACGGTGGTGGTGGTCTTGTG GCTGTATTGGAGCTGCTCGTTGCCGGTTGCTGTAGTATCTCCTGGGTTTTTATCGCTTTTATGCTTTATTTTATGTTTGC TTATGTTTTCCTTGGTTTCCAGGTCTCAGCTACAGGCTTTGGTTGGGTGTTTGTTGTTGGGGATTTCAGGTTTCTTGTTG GGTTTTGTTCTGAGCTGGTGGGGAGTTTTTTGAGAGATTCTTGGGAGGTTTTGTACTGAGCTTGTAGGGATTTTTAAGAG ATTCTTGGGAGGTTTTGCTGTAGTGGGAGGTTTTGATGTTGCAGCTGAGATTTTACTGGCTGTTACTAGTTTGGTCACTG TACCCTGTTGAGAGGGGATATATCTCAACTTCCTATATATATATATATATATATATATATATATGTACACACTTCATTTT TCGAAAAAAAAAGGTATGATTTTTTTTAATTTTCATTTGGTTAAAAATTTGGCGTCCAATGCAGGATGATTTTGATTGTG TTGATCTGTACAAGCAACCTGCTTTTCAACATCCTTTACTGAAAAATCACAAAATTCAGGTAAACTATCTTTTGTGCTTA AACCATTTTTAAGGTTAATTTTTTCAATCTTACATAAAAGATAATATCATTTGACATTACTTAAAAAAAGATGAAAGTTT AATCAATCCCAGTAGTTGTCATTTTTTATTCACATTTTTTCAAATTGAATCTAACATTTTTTTTTCTTATTGTAATAAAG CTTTTTCCAACTTTTACGATGAGTACCATGCAACTTGGTAGAGATAATAAAGATAAGCATTCCAGAAAAAGATGTCCAAT GGGAAAAGTGCCTATTTTCAAGACCAATATCAGGGAGCAGAAGATTAATATGTCTACTTCAAAATCACAACTTGATGGGT TAAATCAATATTCTCAAAGTCGCCCTAGGCATCATGTAAGTCAGTTCAATTAAAAATATTTGGTCTTTAAACTTTTTATT TAACGAGTTACTATTATAACTTTTAAGTAGAAACATTACTTTAGTTTTGCTATTTTTCTTTAAAATTTATATTTATAGTT CTAAATTAAAAACATATTTCTTTGCAAAAACAAATAAATGGGCCAAATATCACAAATTTTAATAATGTTTATCTCATGTT TATTGAATATATTAGAGTAATTATATAAAACTTTGTAAATGTGTTCATCACTTGTCAATAATATCTTATTATTTTCTAGT TTGCTACCCTTAGCACAACCCAAAATATGATGTTTCATGGAGCAAGTGCACAAGCTGCCGTGTATAACTTATCGCTTCAA GCAAACCAATATAGCTTATCTCAAATTTGGATTCAGGGTGGTCCACCTACTGATCTTAATAGTATACAAGTTGGATGTGG TGTAAGTTAACTTTTTTCTTGTTTATACAGTTTTTATTTCTCTTTCATGACATTGTAGAAATTTGGAAAACGTTGTATTT ATGATACTTTATTATATTTATTCTATGTCCAGTCTTTTTAAATATATTATTCTTGTCGTGACAGGTTCATCCTAACTTAT TTGGGGACAGTCAAGTGCGTTTGATCGCCTATTGGACAGTAAGACTCTTAAATTAATGGATTGTATTTACTTCAAAAAAA AATAATGTGATTATTCTAATTTAGATAAATATATGCAGGCAGATGGCTTTAGAAAAACTGGATGTTTTAATCATCAATGC CCAGGTTTTGTGCAAGTCCATCGAGAATTTACCTTTGGAGAAATCATTGGTCCTCCCTCTATCATCGGATCGGATCATAA AAGTTTATATCCTTTCAAAGTCAAACAAGTAAGTAAATTTTAACGCATAAGAGTGCACGAAATTGATAATCTCTTCACCT TCATGAAAGTACAAGCCCTTTAAAATCTGTTACAAAAAATTATAAATTTAAGTCTACCATAACTATATATAAAATAAATT ATTCCATCTAGTGCTGTAAAAACTTAATAATAAAGTTAAAATTACTCAAAAATAAGAATAAATAAACTTAATAATAAATC TTCTAATAAATTTTTCGTGAGGAAATCTTTTTTGGGGATGTTTACTGTTTGGGAAGCGCAATTTTTTGTACTTTATCTAC CATGAGAACCTTTACCTCATGCTTGAATCTTTATCAAAAATACTTTCATTTTCAATTTTTTTATCTATTAAATAAATTTA TTTACTTTATATTTTAAATAATTGTTTTTTTTAGAAAGATAAATGTATATTAGCAAAAGGTTTGAGAGTTTAAACTCTCA AGCAGAAATCATAAATCTTATTTTTTAAATATTTTTATAAGATATTTAGATCATGATAAAATGAGAAATAACATCTAAAA TAGATTAAAAAACATATAGAAAAGCTGTTAATATTCATATTTTTAGTTCATTTATGCTTCATAAAATATTACATTTTCAT TAGATATGATTAATAATTATCATTTGCAGACAAATTATTTTATCTCTTTTAAATGTTTGAATATTTGTAGGATCAATCCA CAGGACATTGGTGGTTAATTGCTGGTAAGGGTTCATGGGCAGTTGGTTATTGGCCCAACCAATTACTTACTCACTTAAGT CATGGCTCATCTGTGATAAGATACGGTGGTGAAACATATGCTTCGCCCAATGTGATGAGTCCCCCAATGGGTAGTGGGAG GTTACCTCGGGAGTTATATAAAAATTCCGCTTTCATGTCAAATCTGGAGATCATAGATTCAAACTACAATGAAGTTAGAG TAAATCCTAAATATATGAAGTCAAATTGCGATACTACACCTAATTGTTATGACGTGCAGTACCATGGATATGAAGGAATT GTTTTTGCGCAAGCTTTTCTCTATGGTGGACCAGGTGGACAATGTGGTATATGATTATATCAACAACTTTATTTAATAAA ATTTTGTTCATTATCGATAAAGATTCCTGAAACTTTGTATGATTAAGCTTCAATATATACTGAAATAAAAATAAGAA
CDS sequence (LotjaGi4g1v0241300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGTCCCAAAACGTAGCATTGCTTCACTAAAAATTATGGCATTTTTTCTCTTTCTGATTATTAGTTTGTGTGTACG ATGCTATGAAGTTGATGGTGGAAGAATCCAGGATGATTTTGATTGTGTTGATCTGTACAAGCAACCTGCTTTTCAACATC CTTTACTGAAAAATCACAAAATTCAGCTTTTTCCAACTTTTACGATGAGTACCATGCAACTTGGTAGAGATAATAAAGAT AAGCATTCCAGAAAAAGATGTCCAATGGGAAAAGTGCCTATTTTCAAGACCAATATCAGGGAGCAGAAGATTAATATGTC TACTTCAAAATCACAACTTGATGGGTTAAATCAATATTCTCAAAGTCGCCCTAGGCATCATTTTGCTACCCTTAGCACAA CCCAAAATATGATGTTTCATGGAGCAAGTGCACAAGCTGCCGTGTATAACTTATCGCTTCAAGCAAACCAATATAGCTTA TCTCAAATTTGGATTCAGGGTGGTCCACCTACTGATCTTAATAGTATACAAGTTGGATGTGGTGTTCATCCTAACTTATT TGGGGACAGTCAAGTGCGTTTGATCGCCTATTGGACAGCAGATGGCTTTAGAAAAACTGGATGTTTTAATCATCAATGCC CAGGTTTTGTGCAAGTCCATCGAGAATTTACCTTTGGAGAAATCATTGGTCCTCCCTCTATCATCGGATCGGATCATAAA AGTTTATATCCTTTCAAAGTCAAACAAGATCAATCCACAGGACATTGGTGGTTAATTGCTGGTAAGGGTTCATGGGCAGT TGGTTATTGGCCCAACCAATTACTTACTCACTTAAGTCATGGCTCATCTGTGATAAGATACGGTGGTGAAACATATGCTT CGCCCAATGTGATGAGTCCCCCAATGGGTAGTGGGAGGTTACCTCGGGAGTTATATAAAAATTCCGCTTTCATGTCAAAT CTGGAGATCATAGATTCAAACTACAATGAAGTTAGAGTAAATCCTAAATATATGAAGTCAAATTGCGATACTACACCTAA TTGTTATGACGTGCAGTACCATGGATATGAAGGAATTGTTTTTGCGCAAGCTTTTCTCTATGGTGGACCAGGTGGACAAT GTGGTATATGA
Protein sequence (LotjaGi4g1v0241300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYVPKRSIASLKIMAFFLFLIISLCVRCYEVDGGRIQDDFDCVDLYKQPAFQHPLLKNHKIQLFPTFTMSTMQLGRDNKD KHSRKRCPMGKVPIFKTNIREQKINMSTSKSQLDGLNQYSQSRPRHHFATLSTTQNMMFHGASAQAAVYNLSLQANQYSL SQIWIQGGPPTDLNSIQVGCGVHPNLFGDSQVRLIAYWTADGFRKTGCFNHQCPGFVQVHREFTFGEIIGPPSIIGSDHK SLYPFKVKQDQSTGHWWLIAGKGSWAVGYWPNQLLTHLSHGSSVIRYGGETYASPNVMSPPMGSGRLPRELYKNSAFMSN LEIIDSNYNEVRVNPKYMKSNCDTTPNCYDVQYHGYEGIVFAQAFLYGGPGGQCGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 13 | 24 | 12 | - | – | |
| PANTHER | 23 | 373 | 351 | 1.2E-120 | – | |
| PANTHER | 23 | 373 | 351 | 1.2E-120 | – | |
| Phobius | 25 | 28 | 4 | - | – | |
| Phobius | 29 | 376 | 348 | - | – | |
| Pfam | 38 | 130 | 93 | 5.3E-13 | ||
| Pfam | 148 | 370 | 223 | 3.6E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0241300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…