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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0243900 |
| Transcript ID | LotjaGi4g1v0243900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dynein light chain; TAIR: AT5G20110.1 Dynein light chain type 1 family protein; Swiss-Prot: sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm; TrEMBL-Plants: tr|Q4W5W8|Q4W5W8_VICFA Dynein light chain; Found in the gene: LotjaGi4g1v0243900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59549254..59552000) extracted from Lotus japonicus Gifu genome v1.2.
ACTAAAATACATACTAATGATTTAGTACTAACTTAATCATCATATTAACAGGAAAAATTGAGCACACAACAATTTTGACT GTATTTAATTTTCAATTTAAAAGTCCGTTTTTGACATTAGAATTTAAGATCACACGTTCCAATGTCCTGAATGTGAAAGA AACTTTAAACCTTCATCGAATCAATGAAAATACTTTCAAAACTGAAAACCAAACTTTACCAAATGTGCTTTTCTTTCCTT CACTCTAGCTTAACTATTTCTCCAACACCTTGAAAACAACAACAAACAACTAGAAGGGTTAATTAGCTATTTTCTCTCTT CCAAGACAAAACAAAACCACCAAACTCAAAAACCCAACTCATTTCTTCCACTTCCAACACCTCCTCCTCCTCACATTCAT GGCACACCGCTCCTCTCAACGGCGGAACTTGGCACCACCAGAACCCAATCCGCCGCCTGCTCCGGCGAACCACCCAAAAC CCACCATCTTCTCAGCCTCACCTTCACACCACCACTACCCAAAACCAAACCCAGATCTCATCCATGCCTCTAAATCCTCT TTCTTAGTAAAACCCTTCTCCAGCTTAAACTTGAGTCGCAATCACCGCAAACAATCGCAAACCAAACACTCTTCTTCTTC TCTCGTCGACACCCTTTCTCAGACCAAGTCCATGACCTCCTCCGCCATAGTTGAATCCTCCAAATACTCACTCCCCAAAC CGAACACTACCCACAACACAGTTCTCGCACAGAAGGACCATGTGAAGAAGACCCACAAGGAGAAACCGAGTTTGATGAAG AATGAGAAGAAGGATTCAATTGACAGGTGTGTTCTGGTTGAGGATGTTAAGAAGAAGATTGAGAAATCGAAACATGATGT TGTGGAGAGAGTTTCGGTTTCTCTGGGTAAGAGTGGGGGAAGGAGAAGATCGTTCTGTGGGTCGCAGGTTGATTTGGGTG ATGTGTTTGCAATCAATGGGGCGAAAATGGTTTCAGCTGATATGCCACCGTTTATGCAGATCCATGCTGTGGATTGTGCC AGAAAAGCTATTGATAGTATGGAGAAGTTCACATCCAAGACCCTTGCATTATCACTCAAGAAGGTAAACATCATATCATT TTACATTCTCATTCTATTGAATAGATTTTGGGATTGAATGTTCAAATTGGTCTCTGAAAGTGAGTGTGAATGTGAATGAT GGTCTAGTTTGTCCCAAAATAATAAGCAATTTAATCCCATCATGTAATCATTTTGTAAAATGTAGGTCAAGTTAGTCTCT ACATGCGTCTCTACATACGCTAATTTGAACAATCTTTATGTGATCAAAAGGTCTAACTTGACTGGCATTTGACAACATTG GAGTCTAATTTGTCTCGCATTTTCATGTTGTAAAATGTCGGTCAAGTTAGTCTCTACATGCGCTAATTCGAACAATTTTT ATGTGATCAAAAGGTCTAATTTGACTGGCATTTTATAACATTGGAGACTATATTGCCTATTGGCTTCTTTCATAGATGAA CTTAACCTACCCTCACGCTTTTGGGACTAATGTCACCATTCACTCTCAATTTTGGTTTTACTTGATTACTGCATGTTTGG AAATTTCTATAATTAATTGATACTAAAGTCAATTCTGGGTAGAAGCTACAATTCTGGGTAGAAGCTATTCTGAATAAGTT ATGTGTCTCAGAATTGATTCTGAGAAAGTTGAGTATTAATGTATGCTTGCATTGGGAATTAGGTGTGGAATTTCAAATTT GAGTCATATGGATTTTGTGTAGATGATTGGTCAATGAATTTTGGTCCGGTGGTTGTGATTTTTGCAGGAATTTGATGGGG TGTATGGGCCAGCATGGCACTGTATTGTGGGGACAAGTTTTGGGTCTTTTGTGACCCATTCCGTTGGAGGGTTTCTATAT TTCTCCATGGATCAAAAGTTATACATCCTCTTATTCAAGACCACTGTACAAAAAGCAGATTGATTGAGAAGGAGGTGAAT GATTTCTGCTGCTGTAATCAGAAGAATTTTGGTATAGATTTTTCTTAGAAAGACAAAGCTTAGTCCTCTGTATATTGCTT CTGCTTCCAAAATGTCTCTGTTTCTGTCTAATTCTGATCTTCCAGCTCCTAATTGGGTTGATGGTGTTAATGCAATGTAA CTAACGGAGTTAATTAATAGAAGAAGAAATCAACTTTACACGCCACATGCTCTTACTTTTTGGCTGAAATCAAATCTGAT TGTTGAATTCTGATTTTTTGGTACTATTTTAATTCTAAGTCATTACTGGCTGCGAAGTGCAAACTTTTGTCCAATTATGG TATACAAAGTGGTAATACAATTAAAAAAGTTTTTAGTGCATGCTTGGAGCAAAATATAGTCCAAATTGTTGAAAAAAACT GCTAACTATCATCTTATATTTAAATATTAGGTCGAATATTTTAGTTCCCTAGCTACCATTTTTGCTATGGGTCACTTTCA TTTTAGTTGTTGCCTCAATATTTGCTAATGGTCCCGGAAGATTTTGTTACTAGCAAGTTAGTTCCTGGAATTAGAAAATA CGTTTGAATATTCTTGAATGTGTAAGTTAATTCCTAGACAGGAATACGTTTGAATTAGGAAATTCGTTTTGAATATTCTT GATTGTGTAAAATATTGTAAATTAATTCCTAGGGCCAAGATTTAGTCCCTATAAGGATTTGTATCGGTTAACGATTTTTT TTTTATTTAGGTTAACTTTATCAATGT
CDS sequence (LotjaGi4g1v0243900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACACCGCTCCTCTCAACGGCGGAACTTGGCACCACCAGAACCCAATCCGCCGCCTGCTCCGGCGAACCACCCAAA ACCCACCATCTTCTCAGCCTCACCTTCACACCACCACTACCCAAAACCAAACCCAGATCTCATCCATGCCTCTAAATCCT CTTTCTTAGTAAAACCCTTCTCCAGCTTAAACTTGAGTCGCAATCACCGCAAACAATCGCAAACCAAACACTCTTCTTCT TCTCTCGTCGACACCCTTTCTCAGACCAAGTCCATGACCTCCTCCGCCATAGTTGAATCCTCCAAATACTCACTCCCCAA ACCGAACACTACCCACAACACAGTTCTCGCACAGAAGGACCATGTGAAGAAGACCCACAAGGAGAAACCGAGTTTGATGA AGAATGAGAAGAAGGATTCAATTGACAGGTGTGTTCTGGTTGAGGATGTTAAGAAGAAGATTGAGAAATCGAAACATGAT GTTGTGGAGAGAGTTTCGGTTTCTCTGGGTAAGAGTGGGGGAAGGAGAAGATCGTTCTGTGGGTCGCAGGTTGATTTGGG TGATGTGTTTGCAATCAATGGGGCGAAAATGGTTTCAGCTGATATGCCACCGTTTATGCAGATCCATGCTGTGGATTGTG CCAGAAAAGCTATTGATAGTATGGAGAAGTTCACATCCAAGACCCTTGCATTATCACTCAAGAAGGAATTTGATGGGGTG TATGGGCCAGCATGGCACTGTATTGTGGGGACAAGTTTTGGGTCTTTTGTGACCCATTCCGTTGGAGGGTTTCTATATTT CTCCATGGATCAAAAGTTATACATCCTCTTATTCAAGACCACTGTACAAAAAGCAGATTGA
Protein sequence (LotjaGi4g1v0243900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHRSSQRRNLAPPEPNPPPAPANHPKPTIFSASPSHHHYPKPNPDLIHASKSSFLVKPFSSLNLSRNHRKQSQTKHSSS SLVDTLSQTKSMTSSAIVESSKYSLPKPNTTHNTVLAQKDHVKKTHKEKPSLMKNEKKDSIDRCVLVEDVKKKIEKSKHD VVERVSVSLGKSGGRRRSFCGSQVDLGDVFAINGAKMVSADMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGV YGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTTVQKAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 285 | 285 | 9.0E-90 | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 1 | 285 | 285 | 9.0E-90 | ||
| MobiDBLite | 12 | 26 | 15 | - | – | |
| MobiDBLite | 66 | 90 | 25 | - | – | |
| SMART | 190 | 280 | 91 | 2.4E-38 | ||
| SUPERFAMILY | 193 | 280 | 88 | 7.46E-27 | ||
| Gene3D | 193 | 281 | 89 | 1.6E-29 | ||
| Pfam | 195 | 280 | 86 | 8.2E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. | ||
| Cellular component | Dynein complex | Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity. |
Expression pattern of LotjaGi4g1v0243900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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