Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0245200 |
| Transcript ID | LotjaGi4g1v0245200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NRT1/PTR family protein 2.2; TAIR: AT5G62680.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9LV10|PTR53_ARATH Protein NRT1/ PTR FAMILY 2.11; TrEMBL-Plants: tr|A0A0L9TS10|A0A0L9TS10_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0245200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59708188..59712141) extracted from Lotus japonicus Gifu genome v1.2.
GAGACTTTTAAGGGACCGTGATCCAAAAACATTTAATATGGCACATTAAGTATTTGAAAAATATACATAGAAATTGATAG ACCCCAAAATCAATTATGGGCTGAAAGCATTAATCCTGATCCTAAGCCCAGAGTGTGGCGCGTGTATGAAAGAAGGGGAA AGAAAGGAAGAGCCTAGAAGGGAGGTGAGCTGGCAGAAAGAGGGAAAGATGCTCTAGGAAGTTTGTTACGGGAATCAGGG GATGGGGTGTATAAAGGGGTATTTCTGTTAGCCTTTAGAGGGTATCTGAGAATTAGCTATGTTGTAATAGAATAGAGAGG ACTTGCCTTCTCTATAGGAGCTCAGCTCTGGAGTAGCATCAGCTACTATTCTCTTGTATCCATTTTTCCAGTTAATCAAA TCACTCATTCCTTCTTAATTCCTGTTATTTCCATACACTGTTACATTGGTTTGTATCAGAAATGCAATTTATCATAAACA TATTACTATATGACGGTTTTTAACTCTCACGACTCACCATAAAGTTGTATGTTTAAAAGATGTTTGACAATAAATGTATG TCCGAATCATTACTTTTAAATATTTTTTCAATTTAGTAAAAAATAATAATAAATTCATTGAGTTCTGGTGTGATATATTC AATGTTCATAGTTTGACTAATTTGAGGGAGTGGTTTTAGCATGTCATAAGCAAAATAAGAGTGAAATCTCACTCTCTCAA ATCTGTATATAATAAACTGTGTCCTTTTGCTGTCTATTTCAACTACATTTCTTCTTCTCTGCCGCAAGAGAAGAGAGTAA CAGGGATTGTATATAATCTAGAAAAGATGGGGGAAAGTGAGGCAGGGGGAATATCAATGAAGACAATTGAGCTAGAAAGA GTGGAGAATAATGAGAAATATCCGACAGATGAAGATCCCAAGGTTAACTATAGAGGATGGAAAGTCATGCCCTTTATCAT AGGTAAGAACTACTAAAGAGTGAAAAACCTTATTGTAATCTCTTTGTCTTTTTTGTGTCTGTATTTTTGAGTCACATCCT TGAACTTTTGAGTAACTCATATAGGGAATGAAACTTTTGAGAAACTGGGAGCCATTGGCACTTTATCAAACCTGTTGGTG TATCTTACAACAGTGTTCAACCTGAAGAACATCACAGCTGCAAACATGATCAACATCTTCAATGGCAGCACCAATTTTGC TACCTTGCTTGGTGCTTTCTTCTCAGATACTTATTTTGGTCGCTACAACACACTGGGATTCTGCTCACTCACTTCCTTTC TGGTACTATTTTCATGCTTATCCTCTATTCCCATGACATGCCACCACAAATTATAGCATGTTAAAATTAACTTATTTTTA CCCAGAATCAATTCTAACATCCAGAAGCTGCTCACTAATTGTATATTTGCAAACATTTCTATAATTGATTCTAAAACCAG AATCAATTCTGGATAGAAACTTTGTATGTTCCTTCTTCTGGATGCAGAACTATTCTTAGAAAAAATATACTGATCCAAAT ATGCTAAGAAGTTTCTCCTCGGAATCAATTCTGTCTTCAGAGTCATTGTAATTGTAGAAGGATTCCAAGGCCAAAAGATA TGATCTCATGTTAGAAAATGTAAACATAATTCCAAAAAAATGAATTAGTTCTGGTCAACTTTTCCCAGATAGCTTAATGA AAAAATTGGTGGTGATTTCATTCCAATTTGTAACTTTCCCCTGCATCCAAATAGGGGTTGCTTTTAATTCAACTTACAGC TGGGATCAAGAATCTGCACCCACCTCAGTGTGGAAAGGAAAGCACCACATGCAAACAGCCAACAGCAGGGCAAATGACAT TTTTGCTTGCTGGATTTGGTTTGCTGTTGGTAGGTGCTGCAGGGGTGAGACCATGCAATTTGGCATTTGGAGCAGATCAG TTCAATCCCAAGACAGAATCAGGAAAGAAAGGAATCAACAGCTTCTTCAATTGGTACATGTTTACCTTCACTTTTGCCCA GATGGTGTCCTTGACACTAATTGTGTATATACAATCAAATGTGAGCTGGGCAGTGGGTTTGGGAATTCCTGCTGCTTTGA TGTTCATAGCTTGTGTGTTGTTTTTCATTGGGACCAAAATGTATGTGAAAATTAAACCAAGTGGTAGCCCCATGACTAGT GTTGTCCAAGTTATAGTGGTTGCAATCAAGAAAAGAAGGTTGAAGCTACCTGCAGAACATCCAATGCTTTCCCTCTTTGA CTATGTATCACCAAAGTGCATTAACTCTAAGCTTCCTTACACATATCAATTCAGGTAACCACATCAAGCTTTTAACTTTA ACTTCATCTGATTTCTTAATAGCCTGTACAACCTATCTTTATCAGAATCAATTCTGAAACTGAGAAACTATTTAGTGCCT GATTGGATCAGCATTATCGCAATTGGTTTTAGATAGAATTGATTTTAGTAAAATTGATTAGAGTAAAAGTGAGTTGAAAA TGAAGTGATTTATGTTCAACGGAGAATTGATTTTAGGACCGAAATCCATTCACCAAAATCACTCTCAAACATATATATAT TCTTCCAAAATTGAGTGCATTTTGAAATTCGTTCAAAAACCACGGTGAAGTCAAAATCACGGTGGACAAAAGCAAAAGCT AAGCTAAGGGAAGTTGCTTCTGTTTACAACAATTTTGACTTTACCAGAGTTTTTAATTATACTCTATTAGAATTGATTAT GAGGATCCCTAATAGAGAACCAAACACACATAAAAAAGCTTCTCCCTGAAGTTGATTGTGATTTCATAATCAATAGAATG GTTTCCAAACATGTATTTAATAGCTAACTGATTTGCTCCAAATTTCTAACTGAAATGAACATTATATTACAATAGGGGTT TGGATAAAGCTGCAATTATGACCCCACAAGACAAGATAAACCCAGATGGATCTCCAACTGATCCTTGGAACCTTTGCAGC GTGCAACAAGTGGAAGAGGTGAAATGCTTAGTGAGAGTGTTGCCTATATGGTTTTCAGCCATTTTGTACCATTTGGTTAT TGTCCAACAGCACACAATCCTTGTGTTCCAAGCACTTCAATCTGATAGAAGAATTGGTCACAGCAAGTTCATGATCCCTG GTGCATCCTACTATGTGTTCTTGATGTTGAGCATGACCTTGTGGCTACCCATCTATGACAGAATAGTAGTCCCTTTTCTC AGCAAACTCACTGGGATAGAAGGTGGCATCACACTCCTTCAGAGGATGGGAATTGGCATATTTCTGGGTTTACTCAGCAT GATAGTTTCTGGGGGGGTTGAAAAGCATAGAAGACATTTGGCTCTGACTGATCCAATAGGATTACAACCAAGAAAAGGTG CAATTTCATCAATGTCTGGTTTTTGGCTAATTCCTCAGCTAACACTAGCTGGACTAGCTGAAACATTCACTGCTGTTGGA CAAATTGAATTTTACTATAAACAATTCCCTGAGAACATGAAAACTATTGGAGGGTCACTTTTCTACTGTGGCATGGCAGG GTCTAGTTATTTGAGTACTTTTCTTATTTCAGTGGTTCACAGAACTACTGAAAAATCTGCAACTGGGAATTGGTTACCAG AGGATCTAAACAGAGGGAGATTAGATTTGTTTTATTACATGATTGCTGCTATTGAAGTCATGAATTTGGGGTACTTTCTA TTGTGTTCAAATTGGTATAGGTATAAAGTAATTGACACCAATAAAAGCATTGTTAATGCATGAAAGTGTGCTAATAGGTA GGATCTAAAATAGTGCTCCTTTTAGACTAGTAAAGGAATAAAGTAGTAGTGTTGTATGGATTAGGAGACATTTGATGTAA TATTCTTAATAAGAAAGGAAAGAAATGGATTTTGCTTCATGTTTCTTTGCTTTGTTTTGCTTACGAGTATTTTTTTCCAG GTGCAAATTCATTTAGGAAATTGTAGCAATTCCT
CDS sequence (LotjaGi4g1v0245200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAAAGTGAGGCAGGGGGAATATCAATGAAGACAATTGAGCTAGAAAGAGTGGAGAATAATGAGAAATATCCGAC AGATGAAGATCCCAAGGTTAACTATAGAGGATGGAAAGTCATGCCCTTTATCATAGGGAATGAAACTTTTGAGAAACTGG GAGCCATTGGCACTTTATCAAACCTGTTGGTGTATCTTACAACAGTGTTCAACCTGAAGAACATCACAGCTGCAAACATG ATCAACATCTTCAATGGCAGCACCAATTTTGCTACCTTGCTTGGTGCTTTCTTCTCAGATACTTATTTTGGTCGCTACAA CACACTGGGATTCTGCTCACTCACTTCCTTTCTGGGGTTGCTTTTAATTCAACTTACAGCTGGGATCAAGAATCTGCACC CACCTCAGTGTGGAAAGGAAAGCACCACATGCAAACAGCCAACAGCAGGGCAAATGACATTTTTGCTTGCTGGATTTGGT TTGCTGTTGGTAGGTGCTGCAGGGGTGAGACCATGCAATTTGGCATTTGGAGCAGATCAGTTCAATCCCAAGACAGAATC AGGAAAGAAAGGAATCAACAGCTTCTTCAATTGGTACATGTTTACCTTCACTTTTGCCCAGATGGTGTCCTTGACACTAA TTGTGTATATACAATCAAATGTGAGCTGGGCAGTGGGTTTGGGAATTCCTGCTGCTTTGATGTTCATAGCTTGTGTGTTG TTTTTCATTGGGACCAAAATGTATGTGAAAATTAAACCAAGTGGTAGCCCCATGACTAGTGTTGTCCAAGTTATAGTGGT TGCAATCAAGAAAAGAAGGTTGAAGCTACCTGCAGAACATCCAATGCTTTCCCTCTTTGACTATGTATCACCAAAGTGCA TTAACTCTAAGCTTCCTTACACATATCAATTCAGGGGTTTGGATAAAGCTGCAATTATGACCCCACAAGACAAGATAAAC CCAGATGGATCTCCAACTGATCCTTGGAACCTTTGCAGCGTGCAACAAGTGGAAGAGGTGAAATGCTTAGTGAGAGTGTT GCCTATATGGTTTTCAGCCATTTTGTACCATTTGGTTATTGTCCAACAGCACACAATCCTTGTGTTCCAAGCACTTCAAT CTGATAGAAGAATTGGTCACAGCAAGTTCATGATCCCTGGTGCATCCTACTATGTGTTCTTGATGTTGAGCATGACCTTG TGGCTACCCATCTATGACAGAATAGTAGTCCCTTTTCTCAGCAAACTCACTGGGATAGAAGGTGGCATCACACTCCTTCA GAGGATGGGAATTGGCATATTTCTGGGTTTACTCAGCATGATAGTTTCTGGGGGGGTTGAAAAGCATAGAAGACATTTGG CTCTGACTGATCCAATAGGATTACAACCAAGAAAAGGTGCAATTTCATCAATGTCTGGTTTTTGGCTAATTCCTCAGCTA ACACTAGCTGGACTAGCTGAAACATTCACTGCTGTTGGACAAATTGAATTTTACTATAAACAATTCCCTGAGAACATGAA AACTATTGGAGGGTCACTTTTCTACTGTGGCATGGCAGGGTCTAGTTATTTGAGTACTTTTCTTATTTCAGTGGTTCACA GAACTACTGAAAAATCTGCAACTGGGAATTGGTTACCAGAGGATCTAAACAGAGGGAGATTAGATTTGTTTTATTACATG ATTGCTGCTATTGAAGTCATGAATTTGGGGTACTTTCTATTGTGTTCAAATTGGTATAGGTATAAAGTAATTGACACCAA TAAAAGCATTGTTAATGCATGA
Protein sequence (LotjaGi4g1v0245200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGESEAGGISMKTIELERVENNEKYPTDEDPKVNYRGWKVMPFIIGNETFEKLGAIGTLSNLLVYLTTVFNLKNITAANM INIFNGSTNFATLLGAFFSDTYFGRYNTLGFCSLTSFLGLLLIQLTAGIKNLHPPQCGKESTTCKQPTAGQMTFLLAGFG LLLVGAAGVRPCNLAFGADQFNPKTESGKKGINSFFNWYMFTFTFAQMVSLTLIVYIQSNVSWAVGLGIPAALMFIACVL FFIGTKMYVKIKPSGSPMTSVVQVIVVAIKKRRLKLPAEHPMLSLFDYVSPKCINSKLPYTYQFRGLDKAAIMTPQDKIN PDGSPTDPWNLCSVQQVEEVKCLVRVLPIWFSAILYHLVIVQQHTILVFQALQSDRRIGHSKFMIPGASYYVFLMLSMTL WLPIYDRIVVPFLSKLTGIEGGITLLQRMGIGIFLGLLSMIVSGGVEKHRRHLALTDPIGLQPRKGAISSMSGFWLIPQL TLAGLAETFTAVGQIEFYYKQFPENMKTIGGSLFYCGMAGSSYLSTFLISVVHRTTEKSATGNWLPEDLNRGRLDLFYYM IAAIEVMNLGYFLLCSNWYRYKVIDTNKSIVNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 107 | 107 | - | – | |
| PANTHER | 17 | 586 | 570 | 6.1E-298 | ||
| PANTHER | 17 | 586 | 570 | 6.1E-298 | – | |
| SUPERFAMILY | 24 | 580 | 557 | 1.44E-19 | ||
| CDD | 41 | 579 | 539 | 0.0 | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Pfam | 106 | 541 | 436 | 2.9E-77 | ||
| Phobius | 108 | 129 | 22 | - | – | |
| Phobius | 130 | 148 | 19 | - | – | |
| Phobius | 149 | 176 | 28 | - | – | |
| TMHMM | 152 | 174 | 23 | - | – | |
| Phobius | 177 | 195 | 19 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 196 | 217 | 22 | - | – | |
| Phobius | 218 | 222 | 5 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 223 | 243 | 21 | - | – | |
| Phobius | 244 | 382 | 139 | - | – | |
| Phobius | 383 | 405 | 23 | - | – | |
| TMHMM | 383 | 405 | 23 | - | – | |
| Phobius | 406 | 424 | 19 | - | – | |
| TMHMM | 425 | 447 | 23 | - | – | |
| Phobius | 425 | 446 | 22 | - | – | |
| Phobius | 447 | 512 | 66 | - | – | |
| TMHMM | 509 | 531 | 23 | - | – | |
| Phobius | 513 | 536 | 24 | - | – | |
| Phobius | 537 | 555 | 19 | - | – | |
| TMHMM | 556 | 578 | 23 | - | – | |
| Phobius | 556 | 574 | 19 | - | – | |
| Phobius | 575 | 593 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0245200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…