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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0245800 |
| Transcript ID | LotjaGi4g1v0245800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin-like protein; TAIR: AT4G17030.1 expansin-like B1; Swiss-Prot: sp|O23547|EXLB1_ARATH Expansin-like B1; TrEMBL-Plants: tr|I3SQI8|I3SQI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0245800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59751634..59753247) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCTCTGCTTCTTATTATCACATAAAGCATTCTCTCTACTATTTGCGGCTAAGAACTTGTCATTCAGACATGGAACTT AACTTCAAGCACCAACTTGGCCTTATTTGTGTGATATTGATATTTCCAGCACTGTGTAACTGCAAGGAGTATTATACTAA ATCCAAAGCAACCTATTATGGCACCTCTGATGGCTATGGGACTCCAAGTAAGTGATATGCAAATAAGTTGTTTGTACTAG GAATCAGGATGGAACACATTTGCATTTTTCACTAATGAAACTAACTAATTGCTTTGCTTATGTGAAAACCATTTTAAGAA TATTCATTTAAAGGTGCATTGTTTCACTTTTAATTTCCAATCACATGTATAAAAGTGCATTGTTGATAATGCAGATGTAT GGCTGAAAATTCTCTTATAATTGACTCTAGAGCCAAAGTTAATTCTGTTAAGAAACTTCTATTAATAGCTTATGACTATC AAAATTGATTATAAAAAAACGTACCTAATTCAAACATGATAAATATATTTTAGTTGGAGTTTGTGGCTTCGGAGAATATG GAAGAACGGCCAATGATGGTAATGTCGCAGCTGTGTCTGCTAGGCTATGGAAGAATGGAGCCGGTTGCGGTGCATGCTAT CAGGTATTTCTAATAATCCTTTGCAAAAGAAAGCTTCATCATAATTGAACATGGAAGAAAACCTTGCAAGTATCTCCACT AATAATTGTTTAAGTTCTAACAAAATTAAATGATGATGGTGATTAAGGTAAGGTGCAAAATACCACAATACCGTAATGAC AATGGAGCATATGTGGTGGCAACAGACTATGGTGAGGGAGACAGAACAGACTTCATCTTGAGCCCACGCGCATTCTCGAA ATTGAGATGCAACAAAACTGCATCTGAAGCATTGAAGAAACACGGTGTGCTTGATATTGAATACAAAAGAGTCCCCTGCA CATTCAAGGGCAACAACATCATATTTCAAATCACTGAACACAGCAGAAACCCCGGTTACTTCGCCATCGTGATTCTCTAT GTCGGTGGAAAATCTGATATCACTGGTGTTCAGATGTTGCAGGTATGCATAAACACAATTCTCACATAATAGTTTCTAAT TTAATTTGTTCTGTTGAAAATGCTTCTTCTTCTATTCAATTACTTGTTTGTGGTTGTGTTGAATGTGTTTTGTTGAAATG TGTCAATGATGTAGAAAGAGTACCACAAATGGGAGCTTCTACGCAGGTCTTATGGTGCAGTGTTTGACATTGCTAACCCA CCTAAAGGTGAAATCCGGTTGAAGTTCCAAGTGAGTGATGGCAGTGCATTGCCTCATTGGGTGGGGCCTAAGTTTGCAAT CCCTGCAAATTGGAAGGCTGGAGCTACTTATTCCACAAAATTGGTGTAATTACAAGAAAAGAAACACTTTAAGATCCCAA TAAGAGTTATTGCTCTTTTGCCAAAGGCACTAGAATAATGGGTTACTTGTACTTTTTTTTAATCTCAAACTACATATATA TGGAGTATGAATAAAATAAATGTAGTACACTTTCTCTTTTACTCATATTTGATATTTGGCTTCCAATGCAAACATTTTTG TTTTTAGCACCAGC
CDS sequence (LotjaGi4g1v0245800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTTAACTTCAAGCACCAACTTGGCCTTATTTGTGTGATATTGATATTTCCAGCACTGTGTAACTGCAAGGAGTA TTATACTAAATCCAAAGCAACCTATTATGGCACCTCTGATGGCTATGGGACTCCAATTGGAGTTTGTGGCTTCGGAGAAT ATGGAAGAACGGCCAATGATGGTAATGTCGCAGCTGTGTCTGCTAGGCTATGGAAGAATGGAGCCGGTTGCGGTGCATGC TATCAGGTAAGGTGCAAAATACCACAATACCGTAATGACAATGGAGCATATGTGGTGGCAACAGACTATGGTGAGGGAGA CAGAACAGACTTCATCTTGAGCCCACGCGCATTCTCGAAATTGAGATGCAACAAAACTGCATCTGAAGCATTGAAGAAAC ACGGTGTGCTTGATATTGAATACAAAAGAGTCCCCTGCACATTCAAGGGCAACAACATCATATTTCAAATCACTGAACAC AGCAGAAACCCCGGTTACTTCGCCATCGTGATTCTCTATGTCGGTGGAAAATCTGATATCACTGGTGTTCAGATGTTGCA GAAAGAGTACCACAAATGGGAGCTTCTACGCAGGTCTTATGGTGCAGTGTTTGACATTGCTAACCCACCTAAAGGTGAAA TCCGGTTGAAGTTCCAAGTGAGTGATGGCAGTGCATTGCCTCATTGGGTGGGGCCTAAGTTTGCAATCCCTGCAAATTGG AAGGCTGGAGCTACTTATTCCACAAAATTGGTGTAA
Protein sequence (LotjaGi4g1v0245800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELNFKHQLGLICVILIFPALCNCKEYYTKSKATYYGTSDGYGTPIGVCGFGEYGRTANDGNVAAVSARLWKNGAGCGAC YQVRCKIPQYRNDNGAYVVATDYGEGDRTDFILSPRAFSKLRCNKTASEALKKHGVLDIEYKRVPCTFKGNNIIFQITEH SRNPGYFAIVILYVGGKSDITGVQMLQKEYHKWELLRRSYGAVFDIANPPKGEIRLKFQVSDGSALPHWVGPKFAIPANW KAGATYSTKLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 4 | 250 | 247 | 5.4E-120 | – | |
| PANTHER | 4 | 250 | 247 | 5.4E-120 | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| SUPERFAMILY | 16 | 151 | 136 | 9.07E-30 | ||
| Phobius | 19 | 24 | 6 | - | – | |
| Gene3D | 20 | 147 | 128 | 2.2E-30 | ||
| Phobius | 25 | 251 | 227 | - | – | |
| PRINTS | 27 | 42 | 16 | 1.3E-18 | ||
| PRINTS | 45 | 63 | 19 | 1.3E-18 | ||
| ProSiteProfiles | 46 | 151 | 106 | 21.817 | ||
| Pfam | 64 | 141 | 78 | 5.7E-10 | ||
| PRINTS | 67 | 85 | 19 | 1.3E-18 | ||
| PRINTS | 134 | 150 | 17 | 1.3E-18 | ||
| Gene3D | 148 | 251 | 104 | 1.7E-24 | ||
| SUPERFAMILY | 152 | 247 | 96 | 1.83E-16 | ||
| Pfam | 153 | 225 | 73 | 7.5E-15 | ||
| ProSiteProfiles | 165 | 248 | 84 | 15.317 | ||
| PRINTS | 193 | 207 | 15 | 1.3E-18 | ||
| PRINTS | 234 | 248 | 15 | 1.3E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
Expression pattern of LotjaGi4g1v0245800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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