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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0245900 |
| Transcript ID | LotjaGi4g1v0245900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nitrate transporter NRT1-2; TAIR: AT5G28470.2 Major facilitator superfamily protein; Swiss-Prot: sp|Q3E8X3|PTR52_ARATH Protein NRT1/ PTR FAMILY 2.8; TrEMBL-Plants: tr|A0A1J7IYG0|A0A1J7IYG0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0245900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59753917..59756760) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAACACAGTTAGAAACAGAACAGCAAAAAATGGAGAATGTGAGGACTCATTCACCTTCTGCACTGGAGGAGCAAGAA CCTATTCCACACTGTCCTTCTCCTGTTTCACCTAGAGAACCAGGAGGGTGGAGTTCTGTCAAATACATCATAGGTATTTA TTTGATCTCACTATTTAACAACAATCAATGTTGTCAGTAGTCACAAACATCATTAACTTCCCACTATTTTAATGCATTAA TGAATGTTGTTGATTTCTTTGCTTTTCACAGGAAATGAGTCATTTGAGAAATTGGCATCCATGAGTTTGATATCAAATCT AACAATGTACCTGCTCACCAGCTACAATCTCAGTGGCATATATGTGGTTAATGTGGTTCAAATCTGGAATGGATCCTCCA ACATTGCTTCATTAGTCGGTGCTTTCATTTCTGATACTTATCTTGGAAGGTTCCACACACTCCTTTATGGCACTTTTGCA TCACTTCTGGTAAGGAAATCAACATCTATCTCCTAATTTCCATGCACATAACGTGTTTGATAAAAAAAAATTATCCTATG TACTTCCGCTTTCCAGAATATCATAACTTATAATGTAACCAATATGTATTGAAACAGAAATTATGAAAAGATGCTAACTT TGATTCATTGATTCACTGATGGGGGTATTCATACAGGTTTAGAATCTAATATACTAAGTGGTCTAACAGATGGTTAATTA TTAATGTTAAATCATTAACAAAGTTTGAAGTTGTGAATCATTAACTGGTACAAAGATCCTTTGTCCTCATTTGATGTCCA CTTCCTCATCTCACCAATAAAATTGTGCTGTGTAGGCATGAATGTGGCTATTATAACTTTACTTTAGGATTTCTCTCCCA GTCCCACTATCAGATGGCTAATTAACTTTAGGACAAAACTTAGGGGTGCAACTATAGCATGACGTGTGGGCTGAAAAAGG AGTAATTGAGGGAAGTTATGACATGAAAAATATTTCCGAAGTAAGTAATTCAGTATTCTATTAGGCAAGCATAAACAGTA CACATAGAGTAATGTATCTAAGTTGTCTCCTGAACTTGTGTTATTGAGCATTGCATCAAGCTTTCAAATCCCTTATTGAT TCATTATCAGCTTGGATTGTATTTGACAGGGTATATTGACCATGACCCTGACAGCAGCTATACATCAATTAAGGCCACTT TCCTGCAAAGAGAGACCCAATTGTCAATGGCCACATCCTTGGCAACTAGGTATCCTCTTTGCAGGTCTTGGACTCTTATC CATTGGAGCTGGGGGCATTAGGCCCTGCAACATTGCCTTTGGTGCTGACCAATTTGACACCAACACAAAAAAAGGCAGGG CGCAATTGGAGAGCTTCTTCAACTGGTGGTACTTCACTTTCACCATTGCACTCATTGGAGCACTCACATGTGTTGTCTAT ATTCAAACCAATGTCAGCTGGACCTTAGGCTTTGCCATTCCAACCATCTGTCTCGCTTTCTCAACGCTCATCTTCCTTTT CGGCCGCCACACTTACATCTACAAGAAGCCTCAAGGGAGCATCTTCTCAGACTTGGCCAAGGTGGTTTCAGCAGCATTTA GAAAAAGAAAACTAAACGCTTCTGGGAGAACCCTTTATGATCCTGCTCCTATAGATTTGGAAAATGCTCCCCTTGTTCAG ACAGATAGGTTCAAATTCCTTGATAAGGCTGCTATAATAGCTGATCCAAGTGAATTGAACAACCAAGGCATGCCAAGGAA TGCTTGGAGACTTTGCAGTTTGCAACAAGTCGAACGCCTCAAATGCTTGATGGGAATTCTACCAGTTTGGGTGACAGGAA TCTGCACTTTCATTGTAATGGATCAGCAGAACACTTTTGGGGTTCTTCAAGTTATTCAAACCAATAGATCCATTGGACCA CACTTCAAGGTTCCACCAGGTTGGATGAACCTGATATCAATGCTAGCACTTTCAATCTGGATATACATTTATGAGTGCAT CTACATTCCTCTAGCAAAGAAAATCACCAAAAAGGCCACAAGATTAACCATGGAACAAAGAATCAAAATTGGTGTTTTTC TATCCATCCTGTGCATGATTGTGGCTGCAATTGTTGAGAAGAAGCGCCGCGACTCGGCTATAAGACACGGAACCTTTCAT TCACCCATGAGCTTTGTTCTGTTGTTGCCACAGTTTGCACTGTCAGGCCTGAATGAAGTCTTTGCTGCTGTTGCTATCAT GGAGTTCTTCACCTTGCAGATGCCAGAGAACATGAGAACTGTTGCTGGGGCAGTTTTCTTTCTGAGCTTGTCTATTGCAA ATTACATTGGTTCTCTGATTGTCAATGTTGTGCATAGAGTAACATCACAGAAAGGAAGGACACCGTGGATTGGTGGTCAT GATTTGAATCACAATAGGCTTGAGTACTACTATTATCTTATTGCTGCCTTGGGAGCTTTGAATTTTATCTACTTCAATTT CTTTGCTAAAAAGTATTTGAGAAATAAGAAGGTGCAACCAGTGGATTTAGATATGGTGTTGGAAATGGTAGGCACCGAGA CAAAGGGAAACATGATCATAGTGTCCTCCTGATAGAGTTTTAATTACTCCAAAAAGTCAAGTTCTTTGGTGCTTTGTGTT TTGCTTAGAGAAGCTAGTTTTGGTCTGGTTGTAATATACAATTTATTATTATCCTTTTTTATGTCTTGAACACTTTAAAA TGTTCCCAGTAAGATACTAGTAAATTAGTCTAGGGATTCAATTTGATTAAATTTTACCTCCACTAGGTATTGTTATTTGG TCATATATGTTAGCACTTCCTTTCACAAATTACTAAATAATCAA
CDS sequence (LotjaGi4g1v0245900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATGTGAGGACTCATTCACCTTCTGCACTGGAGGAGCAAGAACCTATTCCACACTGTCCTTCTCCTGTTTCACC TAGAGAACCAGGAGGGTGGAGTTCTGTCAAATACATCATAGGAAATGAGTCATTTGAGAAATTGGCATCCATGAGTTTGA TATCAAATCTAACAATGTACCTGCTCACCAGCTACAATCTCAGTGGCATATATGTGGTTAATGTGGTTCAAATCTGGAAT GGATCCTCCAACATTGCTTCATTAGTCGGTGCTTTCATTTCTGATACTTATCTTGGAAGGTTCCACACACTCCTTTATGG CACTTTTGCATCACTTCTGGGTATATTGACCATGACCCTGACAGCAGCTATACATCAATTAAGGCCACTTTCCTGCAAAG AGAGACCCAATTGTCAATGGCCACATCCTTGGCAACTAGGTATCCTCTTTGCAGGTCTTGGACTCTTATCCATTGGAGCT GGGGGCATTAGGCCCTGCAACATTGCCTTTGGTGCTGACCAATTTGACACCAACACAAAAAAAGGCAGGGCGCAATTGGA GAGCTTCTTCAACTGGTGGTACTTCACTTTCACCATTGCACTCATTGGAGCACTCACATGTGTTGTCTATATTCAAACCA ATGTCAGCTGGACCTTAGGCTTTGCCATTCCAACCATCTGTCTCGCTTTCTCAACGCTCATCTTCCTTTTCGGCCGCCAC ACTTACATCTACAAGAAGCCTCAAGGGAGCATCTTCTCAGACTTGGCCAAGGTGGTTTCAGCAGCATTTAGAAAAAGAAA ACTAAACGCTTCTGGGAGAACCCTTTATGATCCTGCTCCTATAGATTTGGAAAATGCTCCCCTTGTTCAGACAGATAGGT TCAAATTCCTTGATAAGGCTGCTATAATAGCTGATCCAAGTGAATTGAACAACCAAGGCATGCCAAGGAATGCTTGGAGA CTTTGCAGTTTGCAACAAGTCGAACGCCTCAAATGCTTGATGGGAATTCTACCAGTTTGGGTGACAGGAATCTGCACTTT CATTGTAATGGATCAGCAGAACACTTTTGGGGTTCTTCAAGTTATTCAAACCAATAGATCCATTGGACCACACTTCAAGG TTCCACCAGGTTGGATGAACCTGATATCAATGCTAGCACTTTCAATCTGGATATACATTTATGAGTGCATCTACATTCCT CTAGCAAAGAAAATCACCAAAAAGGCCACAAGATTAACCATGGAACAAAGAATCAAAATTGGTGTTTTTCTATCCATCCT GTGCATGATTGTGGCTGCAATTGTTGAGAAGAAGCGCCGCGACTCGGCTATAAGACACGGAACCTTTCATTCACCCATGA GCTTTGTTCTGTTGTTGCCACAGTTTGCACTGTCAGGCCTGAATGAAGTCTTTGCTGCTGTTGCTATCATGGAGTTCTTC ACCTTGCAGATGCCAGAGAACATGAGAACTGTTGCTGGGGCAGTTTTCTTTCTGAGCTTGTCTATTGCAAATTACATTGG TTCTCTGATTGTCAATGTTGTGCATAGAGTAACATCACAGAAAGGAAGGACACCGTGGATTGGTGGTCATGATTTGAATC ACAATAGGCTTGAGTACTACTATTATCTTATTGCTGCCTTGGGAGCTTTGAATTTTATCTACTTCAATTTCTTTGCTAAA AAGTATTTGAGAAATAAGAAGGTGCAACCAGTGGATTTAGATATGGTGTTGGAAATGGTAGGCACCGAGACAAAGGGAAA CATGATCATAGTGTCCTCCTGA
Protein sequence (LotjaGi4g1v0245900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENVRTHSPSALEEQEPIPHCPSPVSPREPGGWSSVKYIIGNESFEKLASMSLISNLTMYLLTSYNLSGIYVVNVVQIWN GSSNIASLVGAFISDTYLGRFHTLLYGTFASLLGILTMTLTAAIHQLRPLSCKERPNCQWPHPWQLGILFAGLGLLSIGA GGIRPCNIAFGADQFDTNTKKGRAQLESFFNWWYFTFTIALIGALTCVVYIQTNVSWTLGFAIPTICLAFSTLIFLFGRH TYIYKKPQGSIFSDLAKVVSAAFRKRKLNASGRTLYDPAPIDLENAPLVQTDRFKFLDKAAIIADPSELNNQGMPRNAWR LCSLQQVERLKCLMGILPVWVTGICTFIVMDQQNTFGVLQVIQTNRSIGPHFKVPPGWMNLISMLALSIWIYIYECIYIP LAKKITKKATRLTMEQRIKIGVFLSILCMIVAAIVEKKRRDSAIRHGTFHSPMSFVLLLPQFALSGLNEVFAAVAIMEFF TLQMPENMRTVAGAVFFLSLSIANYIGSLIVNVVHRVTSQKGRTPWIGGHDLNHNRLEYYYYLIAALGALNFIYFNFFAK KYLRNKKVQPVDLDMVLEMVGTETKGNMIIVSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 103 | 103 | - | – | |
| PANTHER | 20 | 573 | 554 | 3.8E-290 | – | |
| PANTHER | 20 | 573 | 554 | 3.8E-290 | ||
| CDD | 37 | 562 | 526 | 0.0 | – | |
| SUPERFAMILY | 50 | 565 | 516 | 1.22E-20 | ||
| Pfam | 101 | 527 | 427 | 2.6E-77 | ||
| Phobius | 104 | 124 | 21 | - | – | |
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 125 | 143 | 19 | - | – | |
| Phobius | 144 | 163 | 20 | - | – | |
| TMHMM | 146 | 168 | 23 | - | – | |
| Phobius | 164 | 189 | 26 | - | – | |
| TMHMM | 189 | 211 | 23 | - | – | |
| Phobius | 190 | 211 | 22 | - | – | |
| Phobius | 212 | 216 | 5 | - | – | |
| TMHMM | 215 | 237 | 23 | - | – | |
| Phobius | 217 | 238 | 22 | - | – | |
| Phobius | 239 | 329 | 91 | - | – | |
| Phobius | 330 | 350 | 21 | - | – | |
| TMHMM | 333 | 350 | 18 | - | – | |
| Phobius | 351 | 376 | 26 | - | – | |
| TMHMM | 377 | 399 | 23 | - | – | |
| Phobius | 377 | 397 | 21 | - | – | |
| Phobius | 398 | 417 | 20 | - | – | |
| Phobius | 418 | 435 | 18 | - | – | |
| TMHMM | 420 | 435 | 16 | - | – | |
| Phobius | 436 | 454 | 19 | - | – | |
| Phobius | 455 | 480 | 26 | - | – | |
| TMHMM | 455 | 477 | 23 | - | – | |
| Phobius | 481 | 491 | 11 | - | – | |
| TMHMM | 490 | 512 | 23 | - | – | |
| Phobius | 492 | 514 | 23 | - | – | |
| Phobius | 515 | 538 | 24 | - | – | |
| TMHMM | 539 | 558 | 20 | - | – | |
| Phobius | 539 | 559 | 21 | - | – | |
| Phobius | 560 | 593 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0245900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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