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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0246400 |
| Transcript ID | LotjaGi4g1v0246400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nitrate transporter 1.2; TAIR: AT1G69850.1 nitrate transporter 1:2; Swiss-Prot: sp|Q8H157|PTR19_ARATH Protein NRT1/ PTR FAMILY 4.6; TrEMBL-Plants: tr|K7KML4|K7KML4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0246400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59804422..59805345) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCACAAGTCCATCCCACACAACTGAAATCGGTGGTGAAGTTGAAGAAAGTAACACTACAAAAGAGGATCAGCTAAG TCAAAGGACTCAAACCCCAACAGAAAGCCTTAAATTCCTTAATAAAGCAGTGATGGAACCAGTTCATCCTATGCTGCAGT GCACAGTAAAGGAAGTTGAAGAGGCCAAGGTAGTATTAAAGATCCTTCCCATATTCATGTCCACCATAATGCTTAACTGT TGCCTTGCTCAGCTATCAACCTTCTCAGTCCAACAATCAGCCACAATGGACACCATGCTTGGTTCCTTCAAGGTCCCACC AGCTTCTCTACCTGTGTTCCCTGTTCTCTTCATCATGATCCTTGCCCCACTCTACAACCATTCCATTGTCCCATTTGCAA GGAAAGTGACCAAAACTGAGATGGGCATAACACATCTACAGAGAATAGGGACAGGGCTATTTCTCTCTATTGTGGCAATG GCAGTGGCTGCTTTGGTGGAAACCAAGAGAAAGAAAACAGCTGCTGAATTTGGTTTATTAGATTCTACCAAGCCTCTTCC CATGACATTCTTGTGGGTGGCTTTTCAATACTTGTTTCTTGGTTCTGCTGATCTTTTCACTTTGGCTGGGATGATGGAGT TCTTCTTCACAGAGGCACCATGGAGCATGAGGTCATTGGCCACAGCACTCTCATGGGCCTCACTGTCCATGGGGTACTTC CTGAGCACTGTTCTTGTGTCCATTATTAATAAGGTCACAGGAGCTTTTGGACACACACCATGGCTCTTGGGTAGCAACTT GAATCATTATCATCTTGAGAGATTTTATTGGTTGATGTGTGTGCTTAGTGGACTAAATTTTATTCATTATCTCTTCTGGG CCAATTCCTACAAGTACAGAGGTTCACCAAGGTCTGGATATTAG
CDS sequence (LotjaGi4g1v0246400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACAAGTCCATCCCACACAACTGAAATCGGTGGTGAAGTTGAAGAAAGTAACACTACAAAAGAGGATCAGCTAAG TCAAAGGACTCAAACCCCAACAGAAAGCCTTAAATTCCTTAATAAAGCAGTGATGGAACCAGTTCATCCTATGCTGCAGT GCACAGTAAAGGAAGTTGAAGAGGCCAAGGTAGTATTAAAGATCCTTCCCATATTCATGTCCACCATAATGCTTAACTGT TGCCTTGCTCAGCTATCAACCTTCTCAGTCCAACAATCAGCCACAATGGACACCATGCTTGGTTCCTTCAAGGTCCCACC AGCTTCTCTACCTGTGTTCCCTGTTCTCTTCATCATGATCCTTGCCCCACTCTACAACCATTCCATTGTCCCATTTGCAA GGAAAGTGACCAAAACTGAGATGGGCATAACACATCTACAGAGAATAGGGACAGGGCTATTTCTCTCTATTGTGGCAATG GCAGTGGCTGCTTTGGTGGAAACCAAGAGAAAGAAAACAGCTGCTGAATTTGGTTTATTAGATTCTACCAAGCCTCTTCC CATGACATTCTTGTGGGTGGCTTTTCAATACTTGTTTCTTGGTTCTGCTGATCTTTTCACTTTGGCTGGGATGATGGAGT TCTTCTTCACAGAGGCACCATGGAGCATGAGGTCATTGGCCACAGCACTCTCATGGGCCTCACTGTCCATGGGGTACTTC CTGAGCACTGTTCTTGTGTCCATTATTAATAAGGTCACAGGAGCTTTTGGACACACACCATGGCTCTTGGGTAGCAACTT GAATCATTATCATCTTGAGAGATTTTATTGGTTGATGTGTGTGCTTAGTGGACTAAATTTTATTCATTATCTCTTCTGGG CCAATTCCTACAAGTACAGAGGTTCACCAAGGTCTGGATATTAG
Protein sequence (LotjaGi4g1v0246400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSPSHTTEIGGEVEESNTTKEDQLSQRTQTPTESLKFLNKAVMEPVHPMLQCTVKEVEEAKVVLKILPIFMSTIMLNC CLAQLSTFSVQQSATMDTMLGSFKVPPASLPVFPVLFIMILAPLYNHSIVPFARKVTKTEMGITHLQRIGTGLFLSIVAM AVAALVETKRKKTAAEFGLLDSTKPLPMTFLWVAFQYLFLGSADLFTLAGMMEFFFTEAPWSMRSLATALSWASLSMGYF LSTVLVSIINKVTGAFGHTPWLLGSNLNHYHLERFYWLMCVLSGLNFIHYLFWANSYKYRGSPRSGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 63 | 63 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| Pfam | 20 | 261 | 242 | 1.9E-55 | ||
| Gene3D | 20 | 305 | 286 | 8.1E-89 | – | |
| PANTHER | 23 | 301 | 279 | 4.8E-161 | – | |
| PANTHER | 23 | 301 | 279 | 4.8E-161 | ||
| CDD | 58 | 294 | 237 | 2.1537E-133 | – | |
| Phobius | 64 | 85 | 22 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 86 | 104 | 19 | - | – | |
| Phobius | 105 | 125 | 21 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 126 | 145 | 20 | - | – | |
| Phobius | 146 | 166 | 21 | - | – | |
| TMHMM | 149 | 168 | 20 | - | – | |
| Phobius | 167 | 185 | 19 | - | – | |
| Phobius | 186 | 208 | 23 | - | – | |
| TMHMM | 188 | 210 | 23 | - | – | |
| Phobius | 209 | 228 | 20 | - | – | |
| Phobius | 229 | 249 | 21 | - | – | |
| TMHMM | 230 | 249 | 20 | - | – | |
| Phobius | 250 | 274 | 25 | - | – | |
| TMHMM | 275 | 297 | 23 | - | – | |
| Phobius | 275 | 294 | 20 | - | – | |
| Phobius | 295 | 307 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0246400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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