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LotjaGi4g1v0246600.1

Overview

Field Value
Gene ID LotjaGi4g1v0246600
Transcript ID LotjaGi4g1v0246600.1
Lotus japonicus genome version Gifu v1.2
Description Mitochondrial outer membrane protein porin; TAIR: AT3G01280.1 voltage dependent anion channel 1; Swiss-Prot: sp|Q9SRH5|VDAC1_ARATH Mitochondrial outer membrane protein porin 1; TrEMBL-Plants: tr|A0A0L9TRN9|A0A0L9TRN9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0246600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:59808457..59811643) extracted from Lotus japonicus Gifu genome v1.2.

TTTGTCACCATCTTTAAAGTGTCATGAACAATAGCTAAAAATTGTTTATGGAAATTTCGTTTTATACATACTGCAATCAT GTGAACCATTTAGTACAAGAGGAAACTTCCTTTACCCTTTTCTTCCCAATAAATTATCGTGCCAACAAATCACAAAAAGG TGAATCACAAATAAATTTTTTGATTTCTAAGCATTCATTTTAGAAAAAAATGATCAGCTCTCCGGGGATTTATTTTGATA TTGGGAAGAAGGCTAAAGGTTTTATCAACTCCTCATTATGAATTCTTTTCCTTTTTGATCATTCCCACTTCCCAGTAATA TTTTGACACAAATTTGTTTACTTTTCTATTAGGTGTTCTTCACAAGGACTATGTTCAACAACCACCAATTCACTTTCACT ACCAATTCATGGACTGGAATATGGACCTCGCTTGTCAAGGTAATGTGAAGATCAACTTCATCCTTTTCTTTACATAACTT CTAGTTGAAATATGTTCTTTATTACCATCTTGGCATGGAAATCTATGGAACCAGTTACATAGCTAGAATACTTGTACTAG TGGTGTCACACAATTCAAAGCACGATAACTTCAGAAGTTACACCTTATAACTTCTTCACGTAAGCGATTATGAGCTTTCT ACCACAAAATGTGTTTTGGTTATATGGTTGGAACTTCATTATTAAATCACTTTTGGAGAGAAGCTACATTGTAGCTTCTG GGGACGACTTGCTTTGAATTAGGTGTACATTGTCAATCCAAACATCATATTAGACCTCAAAGAAGTCCACTAGTGAATTT CTTAGAACTCTGAAGACTTTTGCTGCCATATCTGTAACAGTTGAAGAAATTGTACCTGGATTCAAGAGCCTTTTCAAATG TACCATACCTGATTCTGGGAAGGTAAGCCTATAACTTTTTACTGGCCTCTAAACTTTAACCATTACTATAATCTATTAAT CTTCAATCTTAAATGTTGATTTTTGTTTTCATCTGAAATCATAATGAATTCATAGGTGGAACTACGATACTTGAACAATT TTATTGGGATTACTGGATGCATTGGATTAAGAGGAAACATAGAAAGAGGATATGATCCTGTTCTTAACTTCTCAGGCCTT ATAGGAACAAGCCTTCTGTCACTTGGAGCCAATGTTGCTTTTGATATACCAACAAGAACAATCGACAAGCTGAATGCTGG CTTCAACTTCAAAAGTTCCTTCCTTGATGCTTCCTTGACCATGTGAGATAATATCCCTCAAGAAGTAGACTAAATTTATC AAAAAAATGGATGACAAACATCAATTTGTGACCTACAAACTAACTTAAGATTTTTGAATTTAATCTCATGTTTGGTTCCA GGGAAAAATACTCTAGAATCACTTCTTGTTAGAAGCTACAAGTCTTACAGCATGTTTGGATTAACTTATTTTTCTACGTA ATCAACTATGGTGCCCAGAAGCTACTTATGAAAGTTTCTCCATTGATTTTGGCTTCAGATATTTAGTGCATGTTTGAAAA TTCTTCTACAATTGATTCTGAAGCCAAATTCAATTATGGGAAGAAACTTAATTACATGGGTAGCTTATGGTTGTCAAAAT TGATTCAGAGAAAATGTTCCTAGATTCTGTGTGAATTGCATGGTTGGTTGAACGGTTGATTCACATTAGAAGGAGTTTTG ATTCAGGGAGGAACTACTCCTAGTAGCTTCTGGGGTAGCATAATTGATTTTGAAAGATCATACAGACATGCTATAAGTTT GGAATGTCATGCTGAAGTTTGGTGTTATGTTGCAGGCATGATAGGTTTGACACACTGAAAGCCACCTGTTATCATGAAGT GAACCCCCTAACCAAGACTGCCATTGCAGCTGAGGTAAAGTACAGCTTGTCAATGAAGGAAACTGGTGTTACCATTGGTG CTCAGCATGCAATTTTTCCTCAAACTTTGGTAAAGGCTCGATTCGACACATCTGGAAATGCAGGTGCTGTTATTCAACAA GGGTTTTGGCAGAGATTTTTCATAACTATGGCTGGAGAAGTGGATTTTGGGGACCAAACTACCCATCCCAAGGTTGGAGT ATCCATGGCTCTGAAATAGTAAATGCAAATGAGATAAGCTTTTGTCTCCAATTGAGAGGTTTTTGGATGCAAGGGGTGAT AAAACAAGGAAGCAAACTGGATGTGAAACTTCTAAAAATCTTGGATGAGCACTTTTGCATAGTATGACGCCATGTCTAGT AGTACTACTAGTAGATATCTCTATCACTTTTGCCTGTTTATAGAATTGCTTTGTTAATAGCATGTTTGGATTAGCTTCTC TTTCATCAAAATCAATTCTAGAACCTGTAAGCTATCCATAGAAGCTTCTCTTTATAATTGATTCTAGTTTTAGATGCATT GGATTCTTGAAGAATTACTTTGATGACAAAATTCCTTTGTAGGACTAATATGGTGATACCATAATGTTTGGAGTACCAAT TTAGTGCATGATTGTACTTAGTTCATGTTGGTCAAAAGCACATTCAATCCAATGACACGAGAGACATGGATTGGTTAAAC ACACATTCAAACTACCTCGGAATGTGCACGGACAGAAATACAAACATGCATTTAGCCGTTTACTTTGATACAAAAATCAC ATAACACACTGCAAACAAATACAGCCAAAGGCATTAAGCCATTATAGCACACCACCGTTCACTATACACTCCAATACAAA CCAGATATGATCGGAAGGAGTACAAACTACTGATGAGAAGCCTGAAGAAGTCCATTGCGGATTTGACTAGCTACATCGCG AACAGCACCGGGTCCATGAGGAATAAACACAGCAGAGGACTTGGAGGCAGCACCAATCTCTTTCATTGTGTCAAAATACT GAGTGACAAGGACCATGTCCATGACATCTTTTGCACTTGTCCCCGGTACATTCACTGCGAATCCAAGCACACTGTCTCTC AAGCCATTAACAATTGCTTGGCGTTGGCGCGCAATGCCGAGACCAGAAAGATATTTAGCCTCGGCCTCACCCTCGGCTCG CTTGATTTGCAAAATCTTCTCTGCCTCTGCCTTCTCAGTAGCTGCCAACCTCAATCTTGCAGCTGAACAAGGACAGAAAA CATTGGAAGAAAATCAGGCAATCATAAGTCATACAATAGTCTGTTTGGATACGAACTTATTGGAGGT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0246600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATCAGCTCTCCGGGGATTTATTTTGATATTGGGAAGAAGGCTAAAGGTGTTCTTCACAAGGACTATGTTCAACAACC ACCAATTCACTTTCACTACCAATTCATGGACTGGAATATGGACCTCGCTTGTCAAGTTGAAGAAATTGTACCTGGATTCA AGAGCCTTTTCAAATGTACCATACCTGATTCTGGGAAGGTGGAACTACGATACTTGAACAATTTTATTGGGATTACTGGA TGCATTGGATTAAGAGGAAACATAGAAAGAGGATATGATCCTGTTCTTAACTTCTCAGGCCTTATAGGAACAAGCCTTCT GTCACTTGGAGCCAATGTTGCTTTTGATATACCAACAAGAACAATCGACAAGCTGAATGCTGGCTTCAACTTCAAAAGTT CCTTCCTTGATGCTTCCTTGACCATGCATGATAGGTTTGACACACTGAAAGCCACCTGTTATCATGAAGTGAACCCCCTA ACCAAGACTGCCATTGCAGCTGAGGTAAAGTACAGCTTGTCAATGAAGGAAACTGGTGTTACCATTGGTGCTCAGCATGC AATTTTTCCTCAAACTTTGGTAAAGGCTCGATTCGACACATCTGGAAATGCAGGTGCTGTTATTCAACAAGGGTTTTGGC AGAGATTTTTCATAACTATGGCTGGAGAAGTGGATTTTGGGGACCAAACTACCCATCCCAAGGTTGGAGTATCCATGGCT CTGAAATAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0246600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MISSPGIYFDIGKKAKGVLHKDYVQQPPIHFHYQFMDWNMDLACQVEEIVPGFKSLFKCTIPDSGKVELRYLNNFIGITG CIGLRGNIERGYDPVLNFSGLIGTSLLSLGANVAFDIPTRTIDKLNAGFNFKSSFLDASLTMHDRFDTLKATCYHEVNPL TKTAIAAEVKYSLSMKETGVTIGAQHAIFPQTLVKARFDTSGNAGAVIQQGFWQRFFITMAGEVDFGDQTTHPKVGVSMA LK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11743:SF35
1 242 242 2.5E-122 –
PANTHER
PTHR11743
1 242 242 2.5E-122
IPR001925
Gene3D
G3DSA:2.40.160.10
34 242 209 4.3E-30
IPR023614
Pfam
PF01459
39 236 198 3.3E-27
IPR027246

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005741
Cellular component Mitochondrial outer membrane The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope.
Subterm of
GO:0008308
Molecular function Voltage-gated anion channel activity Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
Subterm of
GO:0055085
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
Subterm of
GO:0098656
Biological process Anion transmembrane transport The process in which an anion is transported across a membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0246600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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