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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0247400 |
| Transcript ID | LotjaGi4g1v0247400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; TAIR: AT1G32210.1 Defender against death (DAD family) protein; Swiss-Prot: sp|Q9ZWQ7|DAD1_CITUN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; TrEMBL-Plants: tr|V7CLM9|V7CLM9_PHAVU Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1; Found in the gene: LotjaGi4g1v0247400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59885815..59887837) extracted from Lotus japonicus Gifu genome v1.2.
TTTTACTATGGAGGTAGTGTTGTGAACTTGTGAGTGTATCACAAAATTACAAAGTGTTAAAGAGAATGGCAATGTCTACA AGCAAGGATGCCAAAGACCTTTTCAATGCTCTTTGGTCTGCTTATTCTGCAAGCCCCATAAATCTCAAGGTTCTTCCTCT TGATCCCTCTATTTCTTCATTAGTCTTTACTCTTACGGTTTTACCTAACACCACCTTATGTCCTCCTTCAGATCATTGAC CTCTATGTCGGGTTCGCCATTTCCACTGCCATCATTCAGGTACTTCCCGACAATGAGTCAATTGTTGCCACATTTGTCTT TTTAACACTTGTTTAATGATATCTACATGTGAGATTAGCAAATATTGTACCTATGTTATATATATATATATATATATATA TATATATATATCAACCTTTGGTGATTGTTGCAGTTCTCAATATGAGAGTGAGATTAGTCTGTACCAATCCTTTTATTTGG ATTTGTTTGATGAGGGGTACAGTTGTCAATTTGTTCATTTTGATACTGTATCATTGCTTAGACAATGCCCAAACTTTCTT TCTCCCATATTTTTCTTACATATCCAAACAAGCCAGTTTCCCATTTTTACTCCTAATTAACTCTGTTCTCTATTTATTTT CTCCCTAATTCAATTAGTCCAAACAATGCATATAAGAGATTGCAATAAACATAAACTAGGTGATGCCAAAACCTTAGCTA TCCAAGCAAAAAAAAGTATTGTGATAGAGTGGATTGAGAATTAGGAACTCCATAAATTTATAATCTTGCTTTACTGGATA TTCTTCAAGTTACTAGTTTGATGAATTCTTACTTTTAATGCTTTGATTAGAACTGTACAAGTGAAATTAGTTTCTTCATG AAGATTCAAGGTTGGTTAGTAGCTAGGTTTATGTTAAATTTACTTGCTCTTGTTTAAACTTCAATTTTTCTTTTTTTTTT CTTTATGACCAGGTAGTTTACATGGCTTTGGTGGGATCATTTCCATTTAATTCCTTCCTTTCAGGAGTACTTTCTTGCAT AGGGAGTGCAGTTCTGGCTAGTAAGTGGCAAAGGTCTATACAATTTGCAGGCTAGCTAGTTACACACACACACACACATA TATTTCATTCAATACACTACAAGTACTAGGTGCATATGAGTTTAGTTCTGGTTTTTCTTATCATTGTTATCATCCTTTAC CTTGAACCAGTTTGTCTCCGGATCCAACTGAATAAAGACAATAAGGAATTCAAGGTAAAAAATCTTTTCTTGTGTAATTT AATCTTTGAGCTGATGCATGCGGGCCAAATTGAAACCTGCAATTACTCATGCAAGTTGCAACTGATATATTTTTAGGTTC ATTTACTTTTATATTTCATAATGTATTTCAAAAACCTAGTGAACTTATGGAGTTTCAAATTCTGATGCCTGCATTTTGAC TTGACAAAACAAAGCATGAAGAAAACGAGGGGATGTGTTGTCTGCGTATTGTTTTCTTCACGTGATATATTCATACAGTT ATTTGGTCTTCCATCATACTGCAGGATCAACCACCTGAGCGTGCTTTTGCAGATTTTGTTCTGAGCAATTTGGTGCTCCA TTTGGTGATCATGAACTTCATCGGTTGAATTGGCTTCTGTGTGGCAATGATTTACTTGCTCCATTTGCATGATACCACTT ATGAAGATGAAACAATAATACAAGTCACATGTAGGTGTAGGTGTACTGTGGCTGTGGCTCATGAATCAGAATTCATGATG TATTTCTTTTTTTTTGACCAAAAGATTCAGGAACTCAAGCAGCTTATAACTTAAGAAATGCATAAATATCCTTTATCAAT CCATCTCTATTCTTTCCTAGTCCAGTAGTCCTCACTTTACATTGCCACCATGGCTTCTTTCAATAACTCCCCCATTGGCT TACTCACCTAGCTCTCCCTAAGCCAATCCTATTTGTTATGGATTCTATATTGTAGTTTGATGAATAAGGTATCACTCAAG GAATGTATGAATGTCAACCTAAC
CDS sequence (LotjaGi4g1v0247400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGTCTACAAGCAAGGATGCCAAAGACCTTTTCAATGCTCTTTGGTCTGCTTATTCTGCAAGCCCCATAAATCT CAAGATCATTGACCTCTATGTCGGGTTCGCCATTTCCACTGCCATCATTCAGGTAGTTTACATGGCTTTGGTGGGATCAT TTCCATTTAATTCCTTCCTTTCAGGAGTACTTTCTTGCATAGGGAGTGCAGTTCTGGCTATTTGTCTCCGGATCCAACTG AATAAAGACAATAAGGAATTCAAGGATCAACCACCTGAGCGTGCTTTTGCAGATTTTGTTCTGAGCAATTTGGTGCTCCA TTTGGTGATCATGAACTTCATCGGTTGA
Protein sequence (LotjaGi4g1v0247400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMSTSKDAKDLFNALWSAYSASPINLKIIDLYVGFAISTAIIQVVYMALVGSFPFNSFLSGVLSCIGSAVLAICLRIQL NKDNKEFKDQPPERAFADFVLSNLVLHLVIMNFIG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 115 | 115 | 1.3E-42 | ||
| PANTHER | 1 | 115 | 115 | 2.1E-56 | ||
| Phobius | 1 | 29 | 29 | - | – | |
| Pfam | 11 | 115 | 105 | 7.1E-38 | ||
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 30 | 50 | 21 | - | – | |
| Phobius | 51 | 55 | 5 | - | – | |
| Phobius | 56 | 76 | 21 | - | – | |
| TMHMM | 58 | 80 | 23 | - | – | |
| Phobius | 77 | 95 | 19 | - | – | |
| TMHMM | 95 | 114 | 20 | - | – | |
| Phobius | 96 | 114 | 19 | - | – | |
| Phobius | 115 | 115 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Oligosaccharyltransferase complex | A protein complex that is found in the endoplasmic reticulum membrane of eukaryotes and transfers lipid-linked oligosaccharide precursor to asparagine residues on nascent proteins. In yeast, the complex includes at least nine different subunits, whereas in mammalian cells at least three different forms of the complex have been detected. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0247400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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