Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0248200 |
| Transcript ID | LotjaGi4g1v0248200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing protein; TAIR: AT1G74510.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9CA63|FBK29_ARATH F-box/kelch-repeat protein At1g74510; TrEMBL-Plants: tr|A0A0S3RG77|A0A0S3RG77_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0248200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60076039..60078529) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGAACCAGAGGAAGAAGATACACTGAGAGTGAGAGAGAGAATCAAAAGGCTCATACCCATTTCAACTTCACTGCTCC TTGTTCTAAATTTGTGAGCTTTTCTTCCAACGCTCTCGTTTTTCTTGCTTTGCTTGATCAATCACTGTTTTTCATTTTCT GTTTCTTTCCAGCATTTTTCTGCATGTCTATCGTTTTTACCTGCTCAATTTCAGGGTTGAAGAAAATGGGGGAGAACGGG TTATTTGGGATTGTAGCCAATGCAAACTAAACGTGTTCTCTTTTTTGAAAATAAAAATTAACAGTTTTTATTATTTTACA GAATTCTGCTGTTTCTGAATTTGTATAAATGCATGTTGTCATTTGGATTGAGCTTTGTGTATCTGATTAATTCTCGTGAA TTCCCTTTTTTCACGAGATTCTAGATATCTGATTTTGAAAAAATTCCATTGCATATCTCGATTTTACTTGCTGATTAGTG ATTAGTGATTAGTGATTAGTGATTAGTGATTATGGTTGGTAGACTGGTTTCACCGCTTTGATACTTATTGCTGTGTCGGC GATCTCTCTGTGAATGTGCATGATTCTGCATTTATTTTAGTGCTCTCTTGCGTAAGAAATCGTTAATCGGTGAAAATTGT TTGAATGTGTTGTTGTTTGCTGCTATCTAATGGATATGGTGTTTGCATGATTGGATAGGGTGTTCTCTGGACTTAGGGGG GAATATATATCCGATCGCTATGGTATATGTCGATAGTAAGAATTTTTGATATTGATGTAGTGGAGTTTGAATCACTGTTA TCTATCTGATTAATGGATGTTTTGTTTCAATTTTTGATGGGTAGGAACCAGGTTCACAATTTTCATCCACCATGTTGGAG AAACAATCCTTTCTCATAGCAAGGGACTTGCCAAACTCATGTGAGCAAGAGAGTGAGTGGGTTTACAATGCTCACCTTTT GACCGATCTCTCAGACGATAAGCACCCGGTAGAAGAGGGAGAAAGGAACAAGCTTTCTGGTGATACTGAGGGAGAGGACA CTGAGATGGATGTGGATTGTCTTATACCTTCACAGGACCAAGGGAATGACCAGAATCATGCAGGTGTGATGGTGGATGAT TCAACTTTGCTCATTCACCAGCTCGGTCGGGACATGTCGATCAATTGTCTCGTCCGATGCTCAAGGTCTGATTATGGCTC AATTGCCTCGCTGAACCGGAGTTTCTGGTCTCTCATTCGGACCGGAGAGCTGTATAGGCTCAGGCGGCAAATGGGTATTG AAGAACATTGGGTTTACTTCTCTTGTAACATCATTGATTGGGAAGCATTTGATCCTAATCGTGGCCGATGGATGAAGTTT CCCAAAATGAATTGGACTGAATGCTTTATGTGTTCAGATAAGGAGTCCTTGGGCGTCGGTACTGAGCTTCTTGTTTTTGG AAAGGAAATTTTGGCTCCTGTCATTCATAAATATAGTGTTTTGACTAACACTTGGTCAAGAGGTATGGAAATGAATGGTC CCAGATGCTTGTTCGGTTCAGCTAGCCTCGGAGGAATTGCCATAATAGCCGGCGGTTCTGATTTGCGCGGAAACATCTTG AGTACAGCTGAGCTTTATAACTCTGATACTGGAACATGGGAGACTCTTCCAAACATGAACAAAGCAAGGAAATTGTGTTC TGGTGTATTTATGGATGGAAAATTTTATGTCCTTGGCGGGCTTGGACCTGGCCACTCAAATCATCTAACATGCGCTGAGG TGTTTGATCTTAAGACAAGAAAATGGAGTGAAATACCCAACATGTTTCCTGCACGAAATGGAGGAGTAGGGGTGAGTAGT ACACCAGTCGGTGCTGGGGCACCTCCTTTGGTTGCCGTTGTAAATAATGTTTTGTATGCTGCAGATTATGAACAGCAGGA ATTGAGGAGGTATGTTAAACACAACAACTCCTGGGTTACCCTTGGAAGACTTCCTGATGGTGCAGCCTCTTTGAATGGCT GGGGATTAGCCTTTCGGGCATGTGGAGATCGGCTAATTGTTATTGGTGGGACTGGTGCTTATCATGGAAGGGAGATTGAA GTTAGTGCTTGGGTCCCAGATGAAGGTGCACCACAGTGGAACCTGCTTGGCAGAAGGTATTCAGGGAGCTTTGTGTATAA TTGTGCAGTGATGGGATGCTGAGGTGTTTGATTTTAATGAATAGTGGTTTCGGGATGGAATTAACATTCTTCACTTATAT CTGCCCTCTCTTTTAGGGGAAATTTTAGGTCTTATTTAAAATCATAGATACAGTTTCAGAAGGTTTACAGATCATTGATG TTCTCTTCTTTTTCCTTTTTCGTTGGTCTGAATCTTATCCTTTAAATGGCCATTAGGGCTTTTCAAATGTTGGCATCATG ATGTAGCTAAATGTGAATATTTTTGAGCTCCTGGTATATGTTGGCCCATTTTTCATAAGTTCGATGAAAGCAATACAGAA TAGTACTTGGC
CDS sequence (LotjaGi4g1v0248200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCAGGTTCACAATTTTCATCCACCATGTTGGAGAAACAATCCTTTCTCATAGCAAGGGACTTGCCAAACTCATG TGAGCAAGAGAGTGAGTGGGTTTACAATGCTCACCTTTTGACCGATCTCTCAGACGATAAGCACCCGGTAGAAGAGGGAG AAAGGAACAAGCTTTCTGGTGATACTGAGGGAGAGGACACTGAGATGGATGTGGATTGTCTTATACCTTCACAGGACCAA GGGAATGACCAGAATCATGCAGGTGTGATGGTGGATGATTCAACTTTGCTCATTCACCAGCTCGGTCGGGACATGTCGAT CAATTGTCTCGTCCGATGCTCAAGGTCTGATTATGGCTCAATTGCCTCGCTGAACCGGAGTTTCTGGTCTCTCATTCGGA CCGGAGAGCTGTATAGGCTCAGGCGGCAAATGGGTATTGAAGAACATTGGGTTTACTTCTCTTGTAACATCATTGATTGG GAAGCATTTGATCCTAATCGTGGCCGATGGATGAAGTTTCCCAAAATGAATTGGACTGAATGCTTTATGTGTTCAGATAA GGAGTCCTTGGGCGTCGGTACTGAGCTTCTTGTTTTTGGAAAGGAAATTTTGGCTCCTGTCATTCATAAATATAGTGTTT TGACTAACACTTGGTCAAGAGGTATGGAAATGAATGGTCCCAGATGCTTGTTCGGTTCAGCTAGCCTCGGAGGAATTGCC ATAATAGCCGGCGGTTCTGATTTGCGCGGAAACATCTTGAGTACAGCTGAGCTTTATAACTCTGATACTGGAACATGGGA GACTCTTCCAAACATGAACAAAGCAAGGAAATTGTGTTCTGGTGTATTTATGGATGGAAAATTTTATGTCCTTGGCGGGC TTGGACCTGGCCACTCAAATCATCTAACATGCGCTGAGGTGTTTGATCTTAAGACAAGAAAATGGAGTGAAATACCCAAC ATGTTTCCTGCACGAAATGGAGGAGTAGGGGTGAGTAGTACACCAGTCGGTGCTGGGGCACCTCCTTTGGTTGCCGTTGT AAATAATGTTTTGTATGCTGCAGATTATGAACAGCAGGAATTGAGGAGGTATGTTAAACACAACAACTCCTGGGTTACCC TTGGAAGACTTCCTGATGGTGCAGCCTCTTTGAATGGCTGGGGATTAGCCTTTCGGGCATGTGGAGATCGGCTAATTGTT ATTGGTGGGACTGGTGCTTATCATGGAAGGGAGATTGAAGTTAGTGCTTGGGTCCCAGATGAAGGTGCACCACAGTGGAA CCTGCTTGGCAGAAGGTATTCAGGGAGCTTTGTGTATAATTGTGCAGTGATGGGATGCTGA
Protein sequence (LotjaGi4g1v0248200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPGSQFSSTMLEKQSFLIARDLPNSCEQESEWVYNAHLLTDLSDDKHPVEEGERNKLSGDTEGEDTEMDVDCLIPSQDQ GNDQNHAGVMVDDSTLLIHQLGRDMSINCLVRCSRSDYGSIASLNRSFWSLIRTGELYRLRRQMGIEEHWVYFSCNIIDW EAFDPNRGRWMKFPKMNWTECFMCSDKESLGVGTELLVFGKEILAPVIHKYSVLTNTWSRGMEMNGPRCLFGSASLGGIA IIAGGSDLRGNILSTAELYNSDTGTWETLPNMNKARKLCSGVFMDGKFYVLGGLGPGHSNHLTCAEVFDLKTRKWSEIPN MFPARNGGVGVSSTPVGAGAPPLVAVVNNVLYAADYEQQELRRYVKHNNSWVTLGRLPDGAASLNGWGLAFRACGDRLIV IGGTGAYHGREIEVSAWVPDEGAPQWNLLGRRYSGSFVYNCAVMGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 446 | 436 | 2.5E-213 | – | |
| PANTHER | 11 | 446 | 436 | 2.5E-213 | – | |
| MobiDBLite | 45 | 67 | 23 | - | – | |
| MobiDBLite | 45 | 64 | 20 | - | – | |
| Gene3D | 152 | 443 | 292 | 1.0E-39 | ||
| SUPERFAMILY | 156 | 443 | 288 | 4.58E-46 | ||
| SMART | 195 | 238 | 44 | 13.0 | ||
| Pfam | 227 | 273 | 47 | 1.7E-9 | ||
| SMART | 239 | 286 | 48 | 1.6E-6 | ||
| Pfam | 275 | 321 | 47 | 1.9E-10 | ||
| SMART | 287 | 335 | 49 | 0.78 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0248200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…