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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0253000 |
| Transcript ID | LotjaGi4g1v0253000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heparanase; TAIR: AT5G07830.1 glucuronidase 2; Swiss-Prot: sp|Q9FF10|HPSE1_ARATH Heparanase-like protein 1; TrEMBL-Plants: tr|K7MKF8|K7MKF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0253000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60685076..60689851) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTCATGAGGAAACAACCTCACCCAGCTCAATTTATATCGGACACATGACACATCTGAGACTGAGACAGGTCCTATTC AACCGCCACTACCTACCCATAACCACAAACAAACAATGTTAATGTCCTCCTCGTTCCTTCCCAATGTGGCTGTTTCTTCA CAAACTTTAACCTTACCACTCCCTCACTGAAACGCAACGAAACTAGAAAGTTATCATTCTTTTGGCAGTTCACGCAACCC CCACCATTATTATTCACTCACACGTTATGCCTCACACTTGAGCTTCTTCTTCACTCTCCTCCTATATTTACCACTGGTGG ATGAATCATCCAAGCAGGGCTCAGGTTGGCCACCTAAATACATTTTTCTTGTTTTTTCACCATTTCTATATCTTGGTGTT TTTAAAGTTTTCTCTTTCATTCTGTATATCATCCTTTTGTTTTGGTTTAGATTTTTGCCTTCTGGGTTCATCTTGCATTG TGGAAAGAAGTGGTTTAGCTAAAGGTAATAATGGCTTAGGTGATTGCAGGTGAAAACCAGTTTTTCTTATTGTAACGTAT GATCTGAATTGATAGACTGATGAGTTCTTAAATCTGTTAATGATTTCCTCATTTTAATATATATACAGTGAAGGAACTAT TTATTGGTTTAAATTCTGGTAACCTTTTAGTAAATTGTCATTAAACCATTCCTAGATAGAAGCTATATAAACTTAGAGAT TTCTGGCCTTTTTCACTTTTTTTTTTCTTGAGAAGCCAAAAATTCATTTGAAGAAGCGCAAAGGGTGCTTCAACTCATAT ACAAATGCAATTATAATAAACCTTACCAGTTATTGTTCCTATTGTGAAGTCTTATGTGTGTCTTTAGCCCTGAAAATATG AAAACAGAACATGTGTTTATGCACAAAAGCTACCCTCAATTTTATTATGGAAGCTAAGAAATACGTTTTCAAACATTTTG AAACTCCGGAACATGTATTGGACATCGAAAAATTTCTCATGGAACATATTAAAATGTGATGAAATGGATGTGATAGTAGC ATGTAGCTGTATCTATAGAAATTAGATCTCTCATTTCACCTTGAATGCAAACATAACTGCTGCATTTTCATAACCCCTGC TACAATTATTTTATTTTGGAGTTTGTGATTCATTACGCTTTTTTATTTAATAGACATTGCTATTTTCTGTAAGCAATGAG TATTATAGTTTTCCATTTTTAACGAAGCTTAGACAATCATAAAATTCATTATCCTTTTCTGTTTTGTGTTCTGTGGTTTC TAACAACCTTGGACTAATCATTATGTAGAGTTACTTCAGCTAAAAAGCTTAATGCCATGTCTTCAAACTGTCAGATACAA ATACTTGCAAATATGTAATGTGATTTCAAAAGATATGTCTATAAATTGCAATTATGTCTGAAATTTTTAATTTTTTTACT GCAGTTAATTCGATCAAAACTGAGCTGGGATTGGTTCCTGTTACAATTACCTACTAATGGCATTCCGCGTCGCCATATTT CTCTTTCTGGCTTCTCTCTGTTCGACTCTAGCGCAAGATGTTAAACATAGTTCAATTTCAATAGAAGGATCTCAAGCTAT TGCTGAAAATGATGATAACTTTATCTGTGCTACACTTGATTTGTGGCCTAATGAAAAGTGTGACTACAACTATTGCCCCT GGGGGAATTCTTCTATCTTTAATTTGGTGAGTATACTTTGTTACTCGTGTAAATACTACATGAATTAACTCTAGAAAGCT TCATAGCAGTTTTAGTCATTATTTAATGTGGAATTGTTTTTCAGGACTTGTCTGATCCTGTTCTTACCAAGGCAATCCAA GGTCTGTGTATATTTGCAATGTGCATGTCCATACGATTTTACATTAGTCAAGTTTGTAAAGGTTTTAAATTGTGGTTGTG GTCGCAGTTGCGTGGACTCAAAAACCCTTTACGCAAGGCCACAATTGCAGTTGCGGACCACAATTTAAAACCCCAAAGAT GATAGCACTCAAACTGTTTTGTGGTTTCTAAGCAGCATTGCATTGTAATTAGTAGTGTCATTTTTCGCAAGCCTGATGTT ATTCTTTCTGCAATGGTTGCCTGATAGCTCTCAAGCCTATGAGGATAAGAATTGGAGGTTCTTTGCAAGACCAACTCCTG TATGAGGCAGGAAGTTTGAATTTCCCTTGTCGTCCATTTCGAAAGATGAAAGGTGAATTGTTTGGATTTACACACGGATG CTTACAAATGAAAAGGTGGGATGAGCTGAATCGTTTTTTCAACGAGACAGGGTGAGAATTTAACATTGAGATTGTTGTCT TTACCATCTTCTCAAGCCAAAACAGAATTAAGAAAAATAAAATTAGATCCTCTTTTAAGCCTGCAACAACTCCCTGTTTG AAAGAGCTTATTTGAGCTTATTTCATAGCAGAAAGGGGAGGGAAGGGATCCTAATCAATGATTTAACTTACTTGGAGTCT TACACATGCAGGGCCCTTATCACATTTGGCTTGAATGCACTCATAGGGAGGCACACGGAGATGCATAAAGCTTGGGTAGG AGACTGGGACTCTACAAATGCTTACGACTTCATAAATTACACTGTTTCAAAGGGATACAAAATTGATTCATGGGAATTTG GTAAGACTGAAGAAGACAGAGCTATTTGTCATATAGCTTATATTCATTTTTGCTTCATTGGAACTTATTCTTGCATATGC TGCCATTTAGGTAATGAATTGAGTGGTAAGGGAATTGGTGCAAGTGTTGGTGCTTCACAGTATGGGAAAGACTTGATTAA GCTTAAGCAAATTATAAACAAATTGTACAGCAACTCTGAGTTCAAACCTTCACTTATAGCACCTGGTGGATTCTTTGATA AGGAGTGGTATGAAAAGTTACTTCATACTTCAGGTTCAGGCGTAATCAATGTGCTTACTCATCACATATATAATTTGGGC CCAGGTTTGCTTGCCACTTCTTCTTTTTCCATAGTTATTCTTAGAAATTTAATATTGAAACATATCTAGATAATGGATGT AAAACAAAGCAGTTATGTGGAAGTGTAAAAGTATTATCTTCTAATTCTATGCTTCATTTCAAATTTCTTGTGAGTAGTAT GAAAGTGACATCATTTTCAATTAGTTGAGGGTATCAGTAATACTAACTTTCTTGAAAAACCAAAGTAGTGCAAGAAAAAT GATGAAATCAGGTGGTACATGCCTCATTTCCCTTAAGCAAGTTCTTGTGAGTGGAAAAAACTCTCACTAGGAGAGTTAGC CCCACCATGATGTGGATGTTCGCGACTCGAATAGAACAGTCTCTCGTGAAGGATACCTTGTGGTGCACAAAAAAAGTTAT TTACTGTGTTTACTTGTGAAAATGCTATTTTCTGCCATTTGTTATTAGTTTACAAGTTAATTTCTCTTTTTAGGCAGCGA TGAGAGTCTTGACAAGAAGATTCTAGATCCTGAGCGCTTGAGCAATGTAGAACCAACTCTTAGAAGTCTTTCTGAAACCA TTAAAAAACATGGTCCTTGGTCTTCTGCATGGGTAGGAGAAGCTGGTGGGGCATACAACAGTGGTGGTCGTCATGTGTCT AACAGATTTGTGAATAGCTTTTGGTAATGTTGGTCCTTCCTTATTTTCTGTTCCTCCTTTTAATGCTATATGCATTGAAG CTAATTTCTAAATTCTGAAATTTGAGTGACTTAAAGGTACTTAGATCAACTTGGACTAGCATCCAAATACAACACTAAGG TTTATTGCAGACAGACTTTAGTTGGAGGAAACTATGGCCTTCTCAACACCACCACTTTCGCTCCCAATCCTGACTACTAC AGGCAAGTGCATGTAAATTGAAAAATGAAAAATGAAGGGGGGGAAGACAATTTTGATTTGTTTTCTTAAATTATTGCAGA GTTATTATAAAGTATATTTTATAATGCTCAATATGTCTAATCCTATTTCTGGTGTTGGTTTTGAGCAGTGCGCTTTTGTG GCATCAGCTCATGGGAAAGACTGTTCTTGCAGCTACTACCAGTGATGATTTTTTTCCTTTTTTACGCATGTATGCCCATT GTTCAAAAGACAGAGTAAGTGCCTCGGAATGTATTATTTTTCCGTTTTAATACTTTCTATCGCTAAACCAAATGGGCTCT TAGGTGCATGTTAATCAATTATGGGCAGAAGCTTATGTGAGTAGCTTCTGGATTTCAGAATTGATTCTGTGGAAAATGAA GCGCATCCAAACATGCTATAAATAAATGAAATATTTACAGTAGTAATTTTAGCATTCCTCTAATTCTGAATTTCATTCTC CAGGATGGTGTAACATTACTGCTGATCAACTTAAGCAACGAGACTCATTTCTTACTCAGTGTTGATGAGCATATGACTGT GAGAGATGGTGTAAATAAAGATTCTAAAAGCATCCACATGGAAGCTTCATTGTCTGGTCATTTAAAGAAGGCATTTTCTT TTGTTGGAACAAAAGGATCAGATGTCATGTTCAGGGAGGAGTATCACTTAACTGCAAAAGATGATTACCTTCGAAGCAAA ACCATGTTGCTGAATGGTAATCCAATAGAGTTAACAAGTGATGGAGAAATTCCTACGTTGGCTCCTGTAAGCAATCATGT ACATGCTCCAATATATATAACTCCTGTATCCATTGCATTTATTGTATTCCCCAACTTTGATGCTCCAGCTTGTGCTGGAC ACAGATAATTTTAATGAAAAGGTTTATTGAATCTTGTAGACTGACTGAGTATTAGG
CDS sequence (LotjaGi4g1v0253000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTCCGCGTCGCCATATTTCTCTTTCTGGCTTCTCTCTGTTCGACTCTAGCGCAAGATGTTAAACATAGTTCAAT TTCAATAGAAGGATCTCAAGCTATTGCTGAAAATGATGATAACTTTATCTGTGCTACACTTGATTTGTGGCCTAATGAAA AGTGTGACTACAACTATTGCCCCTGGGGGAATTCTTCTATCTTTAATTTGGACTTGTCTGATCCTGTTCTTACCAAGGCA ATCCAAGCTCTCAAGCCTATGAGGATAAGAATTGGAGGTTCTTTGCAAGACCAACTCCTGTATGAGGCAGGAAGTTTGAA TTTCCCTTGTCGTCCATTTCGAAAGATGAAAGGTGAATTGTTTGGATTTACACACGGATGCTTACAAATGAAAAGGTGGG ATGAGCTGAATCGTTTTTTCAACGAGACAGGGGCCCTTATCACATTTGGCTTGAATGCACTCATAGGGAGGCACACGGAG ATGCATAAAGCTTGGGTAGGAGACTGGGACTCTACAAATGCTTACGACTTCATAAATTACACTGTTTCAAAGGGATACAA AATTGATTCATGGGAATTTGGTAATGAATTGAGTGGTAAGGGAATTGGTGCAAGTGTTGGTGCTTCACAGTATGGGAAAG ACTTGATTAAGCTTAAGCAAATTATAAACAAATTGTACAGCAACTCTGAGTTCAAACCTTCACTTATAGCACCTGGTGGA TTCTTTGATAAGGAGTGGTATGAAAAGTTACTTCATACTTCAGGTTCAGGCGTAATCAATGTGCTTACTCATCACATATA TAATTTGGGCCCAGGCAGCGATGAGAGTCTTGACAAGAAGATTCTAGATCCTGAGCGCTTGAGCAATGTAGAACCAACTC TTAGAAGTCTTTCTGAAACCATTAAAAAACATGGTCCTTGGTCTTCTGCATGGGTAGGAGAAGCTGGTGGGGCATACAAC AGTGGTGGTCGTCATGTGTCTAACAGATTTGTGAATAGCTTTTGGTACTTAGATCAACTTGGACTAGCATCCAAATACAA CACTAAGGTTTATTGCAGACAGACTTTAGTTGGAGGAAACTATGGCCTTCTCAACACCACCACTTTCGCTCCCAATCCTG ACTACTACAGTGCGCTTTTGTGGCATCAGCTCATGGGAAAGACTGTTCTTGCAGCTACTACCAGTGATGATTTTTTTCCT TTTTTACGCATGTATGCCCATTGTTCAAAAGACAGAGATGGTGTAACATTACTGCTGATCAACTTAAGCAACGAGACTCA TTTCTTACTCAGTGTTGATGAGCATATGACTGTGAGAGATGGTGTAAATAAAGATTCTAAAAGCATCCACATGGAAGCTT CATTGTCTGGTCATTTAAAGAAGGCATTTTCTTTTGTTGGAACAAAAGGATCAGATGTCATGTTCAGGGAGGAGTATCAC TTAACTGCAAAAGATGATTACCTTCGAAGCAAAACCATGTTGCTGAATGGTAATCCAATAGAGTTAACAAGTGATGGAGA AATTCCTACGTTGGCTCCTGTAAGCAATCATGTACATGCTCCAATATATATAACTCCTGTATCCATTGCATTTATTGTAT TCCCCAACTTTGATGCTCCAGCTTGTGCTGGACACAGATAA
Protein sequence (LotjaGi4g1v0253000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFRVAIFLFLASLCSTLAQDVKHSSISIEGSQAIAENDDNFICATLDLWPNEKCDYNYCPWGNSSIFNLDLSDPVLTKA IQALKPMRIRIGGSLQDQLLYEAGSLNFPCRPFRKMKGELFGFTHGCLQMKRWDELNRFFNETGALITFGLNALIGRHTE MHKAWVGDWDSTNAYDFINYTVSKGYKIDSWEFGNELSGKGIGASVGASQYGKDLIKLKQIINKLYSNSEFKPSLIAPGG FFDKEWYEKLLHTSGSGVINVLTHHIYNLGPGSDESLDKKILDPERLSNVEPTLRSLSETIKKHGPWSSAWVGEAGGAYN SGGRHVSNRFVNSFWYLDQLGLASKYNTKVYCRQTLVGGNYGLLNTTTFAPNPDYYSALLWHQLMGKTVLAATTSDDFFP FLRMYAHCSKDRDGVTLLLINLSNETHFLLSVDEHMTVRDGVNKDSKSIHMEASLSGHLKKAFSFVGTKGSDVMFREEYH LTAKDDYLRSKTMLLNGNPIELTSDGEIPTLAPVSNHVHAPIYITPVSIAFIVFPNFDAPACAGHR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 545 | 545 | 3.2E-272 | – | |
| PANTHER | 1 | 545 | 545 | 3.2E-272 | – | |
| Phobius | 5 | 15 | 11 | - | – | |
| Phobius | 16 | 19 | 4 | - | – | |
| Phobius | 20 | 546 | 527 | - | – | |
| Pfam | 26 | 341 | 316 | 1.9E-155 | ||
| SUPERFAMILY | 39 | 385 | 347 | 3.4E-54 | ||
| Gene3D | 63 | 383 | 321 | 2.9E-61 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Hydrolase activity, acting on glycosyl bonds | Catalysis of the hydrolysis of any glycosyl bond. |
Expression pattern of LotjaGi4g1v0253000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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