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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0253100 |
| Transcript ID | LotjaGi4g1v0253100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNAP25 like protein SNAP33; TAIR: AT5G61210.1 soluble N-ethylmaleimide-sensitive factor adaptor protein 33; Swiss-Prot: sp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP33; TrEMBL-Plants: tr|I3SMA3|I3SMA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0253100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60693509..60695459) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTAGTTCAAAGAAATCTCCTGTGAAGGTTGCTAAGCCTAGCTCTGTTGGTCCGGTGTATCCTGTTAAATCCGGGTC GAACCCATTTGATTCGGATGATGAGGGAAATGATAACAAAAAGTATAATTCCTCACGGAAGACCTCCTCAGAACGTGCAC TTGCTACGCTAGAAGTTAACACCAATCCTTTTGATGACGTTGATGATACTAAGAAACCTTCATCATCTTTGTATGCCGCT CCATCCGCTGACAGGAACAGATATAGGAATGATTTTCGTGAATCTGGTGGAGTAGAGAATCAGTCGGTGCAGGAATTGGA AAGTTATGCTGTTTATAAGGCTGAAGAGACTACAAAATCAGTCAACAATTGTTTGAAGATAGCAGAGAACATAAGAGAGG ATGCTACCAAGACTTTAGTCACTCTTCACCAACAGGGTGAGCAAATTACCAGGAGTCACTATGTTGCTGCTGACATTGAT CATGACTTAAGTCGGGTATAGTCTCTTGTCAATTAATACTTTTGTTTCAATTTTCCTATATGGGTGGCTTGGTAATGTTG TTTTACACTTGTGATGACACTCTGTTACTTCATACATCGAACTCTTCTGGTTATGCAATCCTTTAAAAATCAGATCAGTA TTCTGAGTATTCTGGACAAGAACTGACTAAGTTTTGGCTCTTATTTCTGCTTCCAGGGAGAAAAGCTTTTGGGAAGCCTT GGTGGCCTCTTCTCCAAAACTTGGAAGCCGAAGAAGACACGTGCAATAAGAGGCCCTGTTATTTTTGGAGGTTGATATTT TCTCTGTGTATGTTTCTTTCCCAATTTCGAATCACTTTGGGTTATCATAGGTATAATGTGCTTCTTCATGATATGCAGAT AATCCAGTTAGCAGACAGGCCAACCACTTGGAACAGAGAGAGAAGTTGGGATTGACTTCTGCACCCAGAGGGCAAACTAA GATGCGAACCCCACCTCACGAATCATCAACTGCACTTCAAAAAGTTGAGGTTCGTATCAACTAGTTGCAGATTTTATTGT TGTTGAAAGCCAGTTTAACATGATAAAGCTGTAGCTTCTTCCTGATATTAATGTGATTAATATGTGTTGGCGATTTTCTA CTATTATTTTAGCTCTAATGACCAGATCACTTACTCTGCATCTAGCTTATAAAAAACAAAACTTACTTTGCATCTAAACC AGTTTTGACTACAATCATCAATGATTTTGTTTGCATTCTCCTTTCATGTTTCCCCCATTAACCACCTTGACTCTCTACTC ACTGTTAGGTTTGACTTGGATAATTTCATTTGGGATTTTCCTCTTTGCCTTGCTTGATATTATATTTATTGTTGATATTC AATTCAGCTACTAAAGAAAATGTCTTGAAACAGTTTGAAAAAGGGAAGCAAGATGATGCACTTTCGGATTTAAGTGATCT GTTGGGAGAGCTTAAAGACATGGCCATTGACATGGGATCCGAAATTGAGAGGTTAGTCCACCACATTCTATTAATTGTTG TTTTCTCGAACTTTACCTTCAAGTGATTCTCGAACTCTCTCTCCTCCCATACGGATTTAGATCTTATCATGTGAAGTTTT CACATAATTTTGTTTTGTTGAAGTTTCTATTAATCTCCCTCTTCATCCCTTTTCATGTGTGTTAAATCAGTGATTCTGGT GAATATTTATGAAGTAAAACATAAAGACAAACTTTAACATAACAATTTCATTTCACATGAGAGGATTTAAATTGACATCT TGACTTGGCTCTATCTGCATCAACTTTCTGAAGAGTTTGAGTTTTGTTCAGGTTGTCATAATTAATAGTTATTTGGTTGT GAATGTTGCAGGCACAATAAAGCTCTGAGCCATCTAGATGATGATGTGGAAGAGTTGAATTTCCGAGTGAAAGGTGCTAA TCAAAGAGGCCGTCGTTTGCTTGGAAAATAA
CDS sequence (LotjaGi4g1v0253100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAGTTCAAAGAAATCTCCTGTGAAGGTTGCTAAGCCTAGCTCTGTTGGTCCGGTGTATCCTGTTAAATCCGGGTC GAACCCATTTGATTCGGATGATGAGGGAAATGATAACAAAAAGTATAATTCCTCACGGAAGACCTCCTCAGAACGTGCAC TTGCTACGCTAGAAGTTAACACCAATCCTTTTGATGACGTTGATGATACTAAGAAACCTTCATCATCTTTGTATGCCGCT CCATCCGCTGACAGGAACAGATATAGGAATGATTTTCGTGAATCTGGTGGAGTAGAGAATCAGTCGGTGCAGGAATTGGA AAGTTATGCTGTTTATAAGGCTGAAGAGACTACAAAATCAGTCAACAATTGTTTGAAGATAGCAGAGAACATAAGAGAGG ATGCTACCAAGACTTTAGTCACTCTTCACCAACAGGGTGAGCAAATTACCAGGAGTCACTATGTTGCTGCTGACATTGAT CATGACTTAAGTCGGGGAGAAAAGCTTTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAGCCGAAGAAGACACG TGCAATAAGAGGCCCTGTTATTTTTGGAGATAATCCAGTTAGCAGACAGGCCAACCACTTGGAACAGAGAGAGAAGTTGG GATTGACTTCTGCACCCAGAGGGCAAACTAAGATGCGAACCCCACCTCACGAATCATCAACTGCACTTCAAAAAGTTGAG TTTGAAAAAGGGAAGCAAGATGATGCACTTTCGGATTTAAGTGATCTGTTGGGAGAGCTTAAAGACATGGCCATTGACAT GGGATCCGAAATTGAGAGGCACAATAAAGCTCTGAGCCATCTAGATGATGATGTGGAAGAGTTGAATTTCCGAGTGAAAG GTGCTAATCAAAGAGGCCGTCGTTTGCTTGGAAAATAA
Protein sequence (LotjaGi4g1v0253100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSSKKSPVKVAKPSSVGPVYPVKSGSNPFDSDDEGNDNKKYNSSRKTSSERALATLEVNTNPFDDVDDTKKPSSSLYAA PSADRNRYRNDFRESGGVENQSVQELESYAVYKAEETTKSVNNCLKIAENIREDATKTLVTLHQQGEQITRSHYVAADID HDLSRGEKLLGSLGGLFSKTWKPKKTRAIRGPVIFGDNPVSRQANHLEQREKLGLTSAPRGQTKMRTPPHESSTALQKVE FEKGKQDDALSDLSDLLGELKDMAIDMGSEIERHNKALSHLDDDVEELNFRVKGANQRGRRLLGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 305 | 305 | 2.8E-144 | – | |
| MobiDBLite | 1 | 100 | 100 | - | – | |
| PANTHER | 1 | 305 | 305 | 2.8E-144 | – | |
| MobiDBLite | 31 | 47 | 17 | - | – | |
| Gene3D | 97 | 175 | 79 | 5.6E-21 | – | |
| SUPERFAMILY | 101 | 171 | 71 | 1.18E-17 | – | |
| SMART | 106 | 173 | 68 | 2.5 | ||
| CDD | 109 | 172 | 64 | 1.43542E-20 | – | |
| SMART | 235 | 302 | 68 | 1.8E-5 | ||
| Gene3D | 237 | 304 | 68 | 4.9E-21 | – | |
| SUPERFAMILY | 239 | 303 | 65 | 6.11E-14 | – | |
| CDD | 245 | 301 | 57 | 2.58073E-16 | – | |
| ProSiteProfiles | 245 | 302 | 58 | 14.014 | ||
| Coils | 271 | 291 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0253100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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