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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0254200 |
| Transcript ID | LotjaGi4g1v0254200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carbohydrate-binding X8 domain protein; TAIR: AT1G18650.1 plasmodesmata callose-binding protein 3; Swiss-Prot: sp|Q9FZ86|PDCB3_ARATH PLASMODESMATA CALLOSE-BINDING PROTEIN 3; TrEMBL-Plants: tr|I3SJQ7|I3SJQ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0254200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60838620..60843100) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATATATGATAGAAGAAAAATAATATAGTGTTAAATGTCTAAAAATATCATTACAACTTCACTGCACAATAGTCTA TACACAGCAATCCACTCTTCTCTATGCTATATTTTGTCCTGTTACTCTCATCTGATCTCACATTGTCTGTCACGCACCAC TCTCATCTCTTCTCTCTCTCACAAGTCTGAACCTAGCTGAGCTGTACCACGTTTTTATCCAGAAACACCATTGCCGCCTC TCCTAACCCTTCTCTGTTCTTACCCTTAACATGGCAGCTCTTGCTCTTGTAGTGCTTCTTCTGGCCACTCACTTCCATTC CAATCTTGCTGCAAGTATGCTTTCAAACCACTTTTTCTCTTTTTCTTTTCCTTCTCCCTTCTCTCAACAACTCAAAGCTT CAAAATATTACTTGTTTAAACATGGAGTCAGATCTTCCCCTGGTTTTAAATATTCTGAATGCTTGATCTCTGTCTATGCT TTCTTTTTTCTCACAACATCTTCAAATATAATTTTTTTATATATTTCTTTCTGCATTTCATCCCTTCCTTGCGTAGTGTT CTGTATATTGTGATTTCTGTCTCATGGTTGTTCAAATGAGTTTCCATTTTTTACAATTTTACTGAAAATTTTAACTTTTT TTGCTCTGTTTCTTCCACATTTGTTGTTTTCTATGAACTGAAAAATCTTGTGCAAACTCTGGTAGATGCTGCTACTTGGT GCATTTGCAAGGATGCAAGCGATGCAATCCTGCAGAAGACATTGGATTATGCTTGTGGAGCTGGTGCTGATTGCAACCCA CTCCATACAAACGGGCCTTGTTTCCAACCAAACACTGTCAGAGCTCATTGCAGCTATGCAGTGAATAGCTTTTTCCAGAA GAAAGGTCAAGGACAAGGGACCTGTGACTTTGCAGGAACAGCCACTGCTATTACATCTAACCCCAGTATAAATCTTCAAT CTCTCTTTTCCTTTTTTGTTTTTACATTTTTCTTGAACAAAAATGGTAGCTAATTAACCCCTTTTTTTGGTTCTCTGTTT TTCTTGTTGTTGATGAGCAGGCATTGGTAGTTGTGTCTACCCTTCAAGCGCTAGGTATGCATTTGATCCCTTAGTTTCTC AGATTCTCATTTTTTTCTGGCTTCTTGTTAAGAATCATTCTGCAACTCATTTGAAAATGAAAATAAATGATGGGGAAAAG TTTATGTGAGTTATTTGGTCTTCAAGCATATTGATAGTAGTATAACTAATTAGGTGTTGGTATAGTTGTTAGGAAGTTAG ACCCTCATTAGGGTGTGAACTGTGAACACAAGTTTAATGGGTGGAGTCCTATTCATGGAAACCTGGTCAAATTGGGTGAA GTTGTAGTTATCATTAACATTAAGAACTTTTCATGCCGGCGGGGCCTTTACAAGCGGTGCCGCTTGGCCCTCGAGTGCAA AGGTAGAAGGGAACTTGACTGCAAGACCCACCTAGGTGATCCGACGGTGCTGAGTGGTAGGGTCTAGCTCAAAGGATAAA AGTTACACTAGGGATAACAGACTGATCTTCCCCAAGAGCTCACACCGACGGAAAGGTTTGGCACCTTGATGTTGGCTCTC TGCCCCCGGAACAACTATAGTTTTCTAAAATGGGCGGGGACGGGCATTCAGGTTAGGGACCAAAATTGTTGATAGCAGTA CCGGTGATTTTATCATAATGGGGACTGGGGTACTTGCATAGATTAGTCATTCACATGAGAGGGTTCTCTTTGAGTAATTG GGTGGGGACATTGCCTTGCTTGCATTAGGTCATTGACATATTTGCACCATGACAATTTCAAGTGTGTAGTGTTCTAGCAT TTTCAAGCTTTTATATTGAGAAGGGTGCTATGATTAAAAGTTAAAACTGATCAATGATTATGATGATTAGTAAAATTTGA TAATTGCTTGCAATGTTCTTTTTATATGCAACTTTTTTGACTTACCCGTACATTGATTAAATAGGGGAAAACTTTATTCA ATCCAAACATGCCCTCCTCAGTGAAATTATTTGCTAGATGTTACACGAACAGGCACAAAATCTAGCACATGCTCAATCTC TATCATTTGTCTATTTTTATTTATTTTGCTTTACACACGTGGTCCCATTTTTATCATTTGATTTTGACAATATTTTAATT TCACGTTGATGCCTCCAACTCATTTGCCCAATTAATAGCCGTTGCAGTGAGACAGTGAGCTTTTAACTTCATTCATCATA GATGCGGCTATAATTGAGATCCAATAAATTGAGTTTTGAAATGAAAAGTGCAGCATCATTAGCAAAAGACAAGTTTGTTC CAATTGAACACGCTTGTGTCTTGCTTTTATGTTTTTTTGCCTTTATTGAAGAATAAAAGTTTAAAAAACCCATGACAATG TAAATGAATTTACATAAATATTTAGTTGGATTTAATCATTTTATTTTACTATATAACTTAATTAAGATTTAACAAATAAA TAAGAAGTAAGATGAAAGTATGCGATTGAATGACTACAAAATATTTGCATCATCGAATGTATATTAATAATTTTAACTAC TGTTCTTTTCATATTAGTTTATAAATATGCTTTTTATAATATTTATCTATTGAGTACTAGATAAAGAAACAAGTTTAATT GATAAAATAACAGTTAATTCTATTTTATTATGAGAATCATTGAAATGGAGTTAAATTTGTGCGTGTCAGCATTGAAGTTT GATTTATTTAATTTTTTATATAGTCTCCCATGCTAGCATTTGAGTGAGTTCATGGGCCAGTAATTTTTAAATTTGATCTT GTGATGATAAGAGACAAACAAAAGCCGCAAGGACAGACAGGGTCCTTGAGATATGGTCCATCAATTTTCCGAAAGGCGAG ATCTTCTTGATGTTTGTGTACCTGTCTTGGCGGTTCTTCATTTTTATTCTAACAAGTTTTGTTGGGTATTGATTTCATAT TGGAGGTTTGTTAAAGTAAGAGTCATGGCATAGATGAATGATGGGGTAGTGAGATTGAATATCTACGGGTGACTCATATA TGACATCTCCAATAAATAATCTAGGATATGTTTTGCTATCATTTTAGAATTTCAGGTTAGGCCTAACCTTGCCTCAAAAG TAAGTTTAGAGGTGAGAATTATATTCCCATATATAAAGATTATCTAGGTTATATTACTAATCAATGCGAGAGGAAATCGA AAACTTTAGGGGTGTCAATGAGTTAGTGCTATGGCCTATGGGGGAAACTTGTTAGTTCTTCAAATGTTTGTTGTGTTTGA AAATTCTTCTTACAATCAATTATTAAGCTAGATAAATTTTGAGGATAAGTTTATTAGAGTAACTTTTTAATTTCAGAATT GATTTTGAGAACAGAAAATCTAATTCAAACATGCTACATGTGTGAGTGCATGAGCATCAATTATAAAGTTAAATGTTAAT TCTGATGTGAAGTTTCTTCAAGTAGTTTTTGGATTCCATAATTAATTTAGAGAGAACATAAGCTGATCTTGACAAGCTAT CATTGGCTTATTGCAGTTTTAAATTTTTTTAGAAAGCTATCATAGAAAGGCTTAATGCATGTTTATAAATTCTTTTATAA TTGAATCTGAAGGCAAAATTAATTATGAGAAAAAGCTGACTACTGGTTCCTTTTCCTAATCAGCGCTTCTGGCACTAGTA CAACCCCAGTGACAACTACACCATCCTTGGGCACTACCCCTTCTTCCACAGGCACTCCATCAACAACCACAGGCACTCCA TCAACAACCATTGGTATTCCATCAACAACCACTGGCACCACTCCATATAGCACAACTCCTGGGGTGTTAGGTGGGATTGG CACTGGTATGGGGCCTTCTGGAACTGGCATTGATGACAGTCATGGCGGGCTTAGACTTTTGGACATTGCTTTGTTCTCTC CATTCTCAATCACCCTCTTCTATGGCTTGATAATGCTTTTGTGGGCTTGAGAAGAAAATTGACCATGAATGTGGCCTGTT ACTGTACCAATGAATGTGTTGTTTTTTAGGTATTGGACTTTGAGTCTTGAGATGTTAGCTTTTGCTTATTTTATTTTATT TTTCTCCACCTCCATCCAGTTCATGGGTTTAAAGAGATGGGCTTTTGATTAGTTATTTAATTTGATTAGAATTTGGCAAC TCATGTTCTTAGGTTCCTTGTTAGTTAGTATGGAGAAGTACAGAAAATATTAATATTGTCAATGAGAAGGAACTGAGGAG ACACCTCTTTATCTATCAACTAGTTGGAGGTTTCTAGAATGACTTTGTCTGAAAGCTTTTAAATGTATGGGGTTTTTAAT TAAGTGCATCTTTGGATACACGGTGGAAACCACCATAAAGTTCAAATCATGGTGGAAAAGATAAGCGAAATTGTTTTTTA GAATTGTTTGAGGTTAAAATACACTGATGTTAAAATCATGGTGTAGAGTCATAAAAGATGAGTGAAGTTGTAATTGTCCA C
CDS sequence (LotjaGi4g1v0254200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTCTTGCTCTTGTAGTGCTTCTTCTGGCCACTCACTTCCATTCCAATCTTGCTGCAAATGCTGCTACTTGGTG CATTTGCAAGGATGCAAGCGATGCAATCCTGCAGAAGACATTGGATTATGCTTGTGGAGCTGGTGCTGATTGCAACCCAC TCCATACAAACGGGCCTTGTTTCCAACCAAACACTGTCAGAGCTCATTGCAGCTATGCAGTGAATAGCTTTTTCCAGAAG AAAGGTCAAGGACAAGGGACCTGTGACTTTGCAGGAACAGCCACTGCTATTACATCTAACCCCAGCATTGGTAGTTGTGT CTACCCTTCAAGCGCTAGCGCTTCTGGCACTAGTACAACCCCAGTGACAACTACACCATCCTTGGGCACTACCCCTTCTT CCACAGGCACTCCATCAACAACCACAGGCACTCCATCAACAACCATTGGTATTCCATCAACAACCACTGGCACCACTCCA TATAGCACAACTCCTGGGGTGTTAGGTGGGATTGGCACTGGTATGGGGCCTTCTGGAACTGGCATTGATGACAGTCATGG CGGGCTTAGACTTTTGGACATTGCTTTGTTCTCTCCATTCTCAATCACCCTCTTCTATGGCTTGATAATGCTTTTGTGGG CTTGA
Protein sequence (LotjaGi4g1v0254200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAALALVVLLLATHFHSNLAANAATWCICKDASDAILQKTLDYACGAGADCNPLHTNGPCFQPNTVRAHCSYAVNSFFQK KGQGQGTCDFAGTATAITSNPSIGSCVYPSSASASGTSTTPVTTTPSLGTTPSSTGTPSTTTGTPSTTIGIPSTTTGTTP YSTTPGVLGGIGTGMGPSGTGIDDSHGGLRLLDIALFSPFSITLFYGLIMLLWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 198 | 198 | 8.9E-62 | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 198 | 198 | 8.9E-62 | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 23 | 10 | - | – | |
| Phobius | 24 | 193 | 170 | - | – | |
| Pfam | 25 | 95 | 71 | 3.4E-19 | ||
| SMART | 25 | 108 | 84 | 1.7E-40 | ||
| MobiDBLite | 114 | 163 | 50 | - | – | |
| TMHMM | 191 | 213 | 23 | - | – | |
| Phobius | 194 | 213 | 20 | - | – | |
| Phobius | 214 | 214 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0254200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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