Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0255900 |
| Transcript ID | LotjaGi4g1v0255900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhomboid family protein; TAIR: AT1G18600.1 RHOMBOID-like protein 12; Swiss-Prot: sp|Q9FZ81|RBL12_ARATH RHOMBOID-like protein 12, mitochondrial; TrEMBL-Plants: tr|A0A072V1P2|A0A072V1P2_MEDTR S54 family peptidase; Found in the gene: LotjaGi4g1v0255900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60982676..60990096) extracted from Lotus japonicus Gifu genome v1.2.
AATTACACCAAAGAGTTCAAACAATGCAGAGGCTTGTCCGCAAGGTGGTGGTTACACTCCCACACCACCACCACCACCAC CATCAACCCAACCTCTCCTTCAACAACTCTCTCCGCCACCGTATCTTCCACACTAGTGGTGGCAGCGCCCACATTCACCA CCACACCCCGAAACCTACACAGCTAGGTCACCCATTTCATCGTTTTCACTCATGGCACTCCTCCAACTCCAACCACACCA AAATCCGATCGTGTCTCTCCCAACCAATCATCGCATTCAACGCTCTCCGGCGAATCAGCCTCCTCAACTGCAGGCCCAAG CCTCCCGCTCTTCATTCTAGATTCAATTCCAACCGGAGTTATGGTTCTTACCGACGTCGTGGTGGTTGGTAATTTTCCGT AAGATTGTCGATGCATTAGCCTGCATAATCGGTTCATTTTACTTGTTTTATGCTAAAGTTTAATCGTTTTGCTCACCCTG AATTTTTCCGATTAGAATCATGGCTGAGGTTTATTTAGGGTTTATGGGGTTTTTGCTTGTGATTGTTTTGTTTCTCAACT ATATTTCTTGATTTTATTATTTGGTTGGAAATGGTTGATTTAAATTGAAATTGACTTTGATGGAAGTGATTTGTGTGTGG AAATAGATATATCAGAAGCAAGTTTGTACTTTGTAGAACAAGGTAGCATAAAATTTTGAACACAATGCAAAAGCAGAGCC ATTATTTTAAACATGTTTGTAGTTGCGATTGGAAGTATAATAGTGGATGAACTGTCATTAGAAGCTTTAGGGTGGCTCCA CTAGAAATGTCAGAAACTCGTAAGAAGTTGCACGTTTCTCTGAATTTTCAAAATTTTGAGAATCTGCCAATGCTGGTTTG CTCAACTAGTTAAAGAGATGTTGATCACACTACACTATGCACTCTCCATGTGCTTGGACTCAAATGCTTGGGGGAGCCTT CAACCAATAATTCTTCATGGGGTCATCTAATCCTAATCATTACCCTTGTGCCCTGACTAAGTATGGGAGTAACTTATCCT ACATATCCTAAGTATTTTTTTCCTGGCAGATAGTAAAGGGCCTATATTCCTCCACATTGTAAATTGGAAATTCAAATTTT ATAATTTTAATATCAGAAGTGTTTGTTATTGCTATTTGGAAAGAATGAAAAAGTAGAAGAAAGAGGATCAGATGAAACTC CCATTTAGAGAACATGTCATTTTTAGCTTATAATGAGCAGCATGAAGACTATACCTTCTGAGTTCCATTTTTGCATTTAC CGATTTACATGTTCTTATAGTGTTGTCAAATGTCAAATAGCGGATATTGCGACGCTATAGTGTAGCGCTTTGAGGGCTCA CCGCTATCCGCTTTTTGCCACTATTTTCCTCGATCTGCGATTAACAACACTGGTTATTTACGATAGTAAAGTTCAAATGT TAATCCGTTGTAGCAAGTCCTTCTGATTCTTCTTATTCGTGCATCATCAACAAAAGTCTTATCCCACTAAGTTAGGTCGG CTATATGGATCATCCAATACCCATTGAGCTTGATCAAAAACCAAATTTTGTGGGATATTATTCTAATTTTGCGGGATTCT AAATTGTGCATCACTCCAACAAAATGCTTGATGCTTTACATTTCATTGCTATTTTCATATGTGCAACTTGTAATTAGCAT AGTTGTAATGCATTCTCATCGTGCCTATAAATCAACCTGGACGTGGCAGACAATTATGCACCCTATTATCCTTTCATTGA CCATTTGTTTTATTCTTTATGCTGGTGAAACTCTGAATTTTCTTGTAACTCTCTTTTAATATTGAAATGCAGATAAAAGT ATTTCCATCAAAATAATCCTATGCAGAAAAGCCATGATTTTTAATACAAATGTTTAGACTGTTTAATATGATATGGTAAA TTCAATAAATATATTTTTTCTTATTTGCAGGAACTCTTGGTTGGACACGCTAACACCCGATAACATGGTTTTCGGCTTGA TTATAGCCAATACTGCTATTTTTTTGTTATGGAGGATAGCAGATGAAAAGTTTATGATAAATAACTTTACTGTGAGTTTC TTGATTAATAAACTCGGTGATGCCTCTTGTAAATATTATTTTCCTGCCATTGCTTTGTACGTAAATCCCATCTGTGTTGC GGGTGCATCAAAGACAAATACTGTTTTGGAAATTCTTCATTGTGATAGTGTTATATATAACATTACTGTCTTTGATGGTG TGTCTGTACCCTTATCTTATTTTTGTTGAGTATAGAAAGAAAATGAACAGGAGTTTTGATACTTAAAATAATTCTTCCTA ATAGCTGTAAATGTAACAACCTAATCTCAAGTTGAAGTTTATTTTTTGGAGATACTATGAGACACTTAGACCAAGTCCAT ACCTGATGCATATAAGTTAGAATAGATTCCATCAAAGTAATGGTTATTGCTAGTATGGTATCACCTGTGCGAAAAGGCTT GGTTGTTGTTGTTAAGGTACTTTAGCAGCTGTTTATGGATGAAGTTGGGAAATATGGTATTTCAGTGTTATTCTCTGTAT GGATTTAACGTCTTCTAGAGTGCTAATTTATTTATTTTCTGTTAACAGATCTCTTTGGACAATATTAAGAGTGGGCGCTT GCACACTTTGATTACCAATGCATTCAGTCATGTAGATGCCTGGCATATAATTTCCAACATGCTTGGACTCTACTTCTTTG GAACGAATGTGTGGTTGCCTCTTCTTGAATTATTATTTTTTTTATTATTTCTCTCTCGTCTCTTTCCTTATATTGTTTTG GGTTGGCATGTATATATAAATGAAAAAGAAAAGAACAATATGTCACATGGTTATGAAATTCAGAGTCCAAAACACAAGTT TCGTGCAAGAATTATATAATATCTTGAATTTCTTATCGCATTCTAGATTATCAGGCTTGTGCATTGGGTGGCTCTTCCAG AATTTCTGTCTCTTGAAATTTGTTTTTATTACTTATCATTATCATACGATAAATATCTCAAATATACTGAATATAAATCT AGTAATCACATAGCAGGTTTTTAGTTATACTATTTTCCATAATAACTTTTGGCTTTAAATTAGATGAAAAATACCAAATC GACTATATATTTTATCGTATGATGCCATTTCTGTCGTTCTCTTCAATTTTCTTGTTTTTTTTTATGGGCTTACGTACTCA TAGTGATAAATACGTTAGGATTCATTCAGTTTATAGTTTGTTGGTATCATTGTGATTAGGTGTGGTATTTTGCCGTCAGC AGCGTTTTCTTTTCTTAGATTGTAAGAAAAGACAATAGGAGAAGGAAGAAGAACCTAACACATGGGATGCTAACTATTGG GTTTGTAGTTTAATGAGTTACTACTATATGTTGATAGTTTTGGAGCATAAGATTTAAAGATTGTGATTTTATCAAAAGAA GAAAGATATTTTTGTCATTGGCCATCCCCTAAAATCTAGTTTGATTTATTTCTGTTCATTTGTTGCTTCTCTCTTATTTT TCTTGTTGATAGTTGATACGATGTCTTTTCCTAACACATGGAATGTTAACTATTGGGTTTGTAGTTTAATGAGTTACTAC TATATGTTGAGACTTCTGGATGATAAGATTTATAGATTGTGATTTCACCTAAAGAAGAAATATATTATTGTCATTGGCCA TCCCTAAAATGCAGTTTGACTTATTTCCGGTGCTTCTCTTATATTTTTCTTGTTGTTTCTCTTTTCCATTTTGGTGCACA CAGTAAACATATTCTTTCATTCACAACATTGGCTTGTTAAGAACTCAGATACCATCACTTAAATGATAAATTTCTTGCTT TTATCTTTCTAAAATGAATAATTTATTCTATTAGTTTCCATTACTCATTACTTTTTCCCCTTGGCTTTAAGCAGGTTGTA AGCAATTTTGGACCTGGATTTTTGCTGAAGCTGTATCTTGCTGGGGCAGTTGGTGGTTCTGTTTTCTACTTGGTGCATCA AGCCTATAAGGCTCAATCATCAAAGGTCCTGTATTGATTGAAAGGGATAAAATGTCCGTGACCTTTTTCTTCGCATTTTC TGTGCGACAGAAAATGGAAAAAAATCTTCATTTGAAGTCTACCATAGCAACTAGAATAATTAATATGCCAATTCTTCAAT CACAACCTTTGATATATCAATTCCTAGATCTTACTTTCATTTTGATATACCTGTAACAGGGGAAAGTTTTAAATCTAAAA CCTATCTTCAGATATGTGGTACATTTGATTCTGAAGTAGCAATCTATGAATGGTCTTTCTATATTGTTTTGATAGAGCAT ACAATGATAATAGACATATTTTGTGCCTAAGGTGACTTGATTGGTTTCATTAAAATATGAGCAACAGTTAATATTTATAC TCTTGTTGGTTGGAACTGACATATTTTTTTAAATACTTTACGAGATGTGAAAAATCTTTATCTATATTTTTTACCGAGGT TTTAATGTTTCTCTTCAAATGTTTGATACATTTGTTTCAGAAGTAACATCTATAAATGAACTTTCCATATTGTTTTGATA AAGCATACAATGATAAAAGGCATATGTTGTGCCTAAGGTGACTAGGTAAGTTTCATTACCAAGCAACAGTTAGGGCTCGT CTGGTTACCCGTTTCATTTTTCATTAAGTGTGTTTAGTTTACTTTTTGTAAAGAAAAAGTGTCTCGGGATGTATTACTTT CCCATTTTCATACTTTTTGGCTGGAAGTAACATATTTGTGTGAAATACTTTACAAGACATGAAAAATCCTTATCTACATT TTTAGTGTGGTTTTAACATTTCTCTTCATTTTGTTTGCAACAGGGCTGGAGATTTAGCAATCATTCAAAAGAATTGGCAT TGGTAAATTTTTAGTTACTATTCTATAATAACCTTCTCTTCTTCAGGGAGTGTAGGATGTGTTTTTGTGATAACAGATGT TCTTGGTCTGACTTGTTGACTATGATTTTTATCAGCAATGCATTCAGGGAATTATTTATGTTTTTAATCTGTGTTAATTC CCTTGACGATTCTTCTATAGTTCAATTAAAAACTCGAATGAAAGAGGATTTTTCTACATACATTTAATTTTGTTGTTGCA TAGCATGGCCAGATCGAAAGTTCCTTTCTGTTGTGATTGTGATGCGTTCAGTGAGTTAATTCCATTTTGGTTCTAAACTT TTTTTACTATTATTACCTTTGAGGCACGCATCGTTATGTAAATGAGCTGTCATTACCTACCAGAATTAATCAATTATATT CTGATCACTAGACTCCATTAAGTTCTCCTAGTCATAGGAAATGTCCATTAAGTTCTCCTACAATTGCTTCCGTCAAATTA TAGTGAGATTATCAAGTTACTTTCGTATATGCATTAAAAATTACTATTTGCTTGTATCACTTGTGTGTTGTCACATTAGT TAAAGTCACTGCATGAGATTAATTTAACTAGAACTTGGCAATAATTAGGGGGCAAGTGGAGCTGTGAATGCAGTTATGTT GCTTCAGATATTCCTCTTTCCAAAAGCAACCATCTATTTCGATTTATTTATACCAGTTCCTGCAATCCTGTTGGTAAGCT CTTCTCAACCTTATGCTAAGTCAAAACTGTGATCTTTGTAAGATGGAGACTCACACATCCTTTTCTTCTGTCTTATAAAT TGTTGACAATTAAGGGAGTCTTCATGATAGGGAAAGACATGCTCAGGATAATGGAGGTATGATGGACTGACTCTCTTAAG GTGTACTAATCATGTTTACTATTTTTGATAGCACTTTCCACCTCGAGCAGCTAGTTGTAGACAAATATATAATGCCAGAC TTGTAATTACTTGTTTTATGACTCCAACACAGTTTCTATAAACTCAAGAGTAAGCGCTTTATGGCAATAAGCGCTTATTC TTAAGCTAATTTGAGAAGCTTATTGAAATGATCTCCAAATAGATCATAAGTAGGTCAAATGCTTATTCATAAGCTAATTC TAAGTAGCTTATGAAAAAAAACTCAAAACAGCAGAAAGGTAGCTATTTACATAAGCTCTCACAAAGACTTGCATATGCTC TTAAGCTTAAATAAGCTCTTCCAAACAGGGCCTTTAATATTTTAAGAATTGTCAAATTTATGCCATCCAGTTGGGGTCTG TCCTTGTTGTGAAATTACTGTATAAACCACTTGTCTTTTTGTTACCACTTGCGTTGCGTTATGAAATTTCTGTATAAACC ACTTGTCTATTGAATTGATTATTTCCTGCATATCTTTTGAACTTCACTTCTCGCATATTTCCATGGCAGAATATGAAGAA TAATCGTTGGTTTTCTATTTGTAGGGAGACACTAGTATATCAGGATCTGCACATTTGGGTGGTGCTACTGTTGGAGCTAT AGCTTGGGCTCTAGTTCGGAAAGGAAGATTCTAAATCCTTTTTCATACCTCAGTAAACCCGATTCTTTACTTGTTAATTA CCATTAAAGGAGTTGTTAATATTGACACATGAGTTGCTGTTCCTTTTTGTTTGTCTGTAATGAATTACCATAGCTTAGGT ATCATTGTTAAGTTATTGGGTTAAATTTGAATTACTAACAGTTGCTGCTGCTTTACAAGCTCCTATTAGTTACAATGATT TATTCAATTACTAACCCAGAAACCTTCCCTCGTCAAACCCATAAGGGCATTGTTACATACACCACTCACCACCTTCGCCC CAAAACACACCACACCCACTTTATCAAAAACCCAAAAAATACTCTTCTCCTCAACCTTCTACTCACTCTTTCCACGATAC TCTCACACCATTCTCCCTTACCATCTTCTTCCACAACTCTCCTCACTACTTTCTTTTCCAACATCCTCACCATCACTCCA CACCACTCTGCTCACCCTTTGACCACCATTTTTCGCTTCTGCAGCAACAATGATGAAGCTTCTCATGGTGTGGGCGATCT CAACAATAGCTTCCAGATTTATGTCATCACTACTCCGAGCTTATTTTCAATAGCTATTTATGTCATCACTACTCCGAACT AATTTTTGGTATGCAACAATAGCTTCCAGATTTATGTTGAATAATTATATCTTCACACTCTCACCTCCAAAATGAGGTGT GGAGAGGTGGAGGAAGAGAGAGATATGAAGAAAGGAGAAAGAAAGTAAAGATGTGATAAGTGATTTGATTGATAGAAAAA AGATAAATAGATAGAAATGAAGGTGGAAAAGCAGTGGAGAGGTGTGTATGTATCATAACTCGATTTATGTTTGCAAAACA TTAGTCAAACAAGGACTATGTGTTTTTTTTATCTACCAAAAAAAAAGTTAATTGTTTCTTTATAGTAAATAATTAAATTA CTTATTAGCAAAGATTTTTTAAAGAATTATTTAAGAATAAAACTGTAAATTTGAATTGAAG
CDS sequence (LotjaGi4g1v0255900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGGCTTGTCCGCAAGGTGGTGGTTACACTCCCACACCACCACCACCACCACCATCAACCCAACCTCTCCTTCAA CAACTCTCTCCGCCACCGTATCTTCCACACTAGTGGTGGCAGCGCCCACATTCACCACCACACCCCGAAACCTACACAGC TAGGTCACCCATTTCATCGTTTTCACTCATGGCACTCCTCCAACTCCAACCACACCAAAATCCGATCGTGTCTCTCCCAA CCAATCATCGCATTCAACGCTCTCCGGCGAATCAGCCTCCTCAACTGCAGGCCCAAGCCTCCCGCTCTTCATTCTAGATT CAATTCCAACCGGAGTTATGGTTCTTACCGACGTCGTGGTGGTTGGAACTCTTGGTTGGACACGCTAACACCCGATAACA TGGTTTTCGGCTTGATTATAGCCAATACTGCTATTTTTTTGTTATGGAGGATAGCAGATGAAAAGTTTATGATAAATAAC TTTACTATCTCTTTGGACAATATTAAGAGTGGGCGCTTGCACACTTTGATTACCAATGCATTCAGTCATGTAGATGCCTG GCATATAATTTCCAACATGCTTGGACTCTACTTCTTTGGAACGAATGTTGTAAGCAATTTTGGACCTGGATTTTTGCTGA AGCTGTATCTTGCTGGGGCAGTTGGTGGTTCTGTTTTCTACTTGGTGCATCAAGCCTATAAGGCTCAATCATCAAAGGGC TGGAGATTTAGCAATCATTCAAAAGAATTGGCATTGGGGGCAAGTGGAGCTGTGAATGCAGTTATGTTGCTTCAGATATT CCTCTTTCCAAAAGCAACCATCTATTTCGATTTATTTATACCAGTTCCTGCAATCCTGTTGGGAGTCTTCATGATAGGGA AAGACATGCTCAGGATAATGGAGGGAGACACTAGTATATCAGGATCTGCACATTTGGGTGGTGCTACTGTTGGAGCTATA GCTTGGGCTCTAGTTCGGAAAGGAAGATTCTAA
Protein sequence (LotjaGi4g1v0255900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRLVRKVVVTLPHHHHHHHQPNLSFNNSLRHRIFHTSGGSAHIHHHTPKPTQLGHPFHRFHSWHSSNSNHTKIRSCLSQ PIIAFNALRRISLLNCRPKPPALHSRFNSNRSYGSYRRRGGWNSWLDTLTPDNMVFGLIIANTAIFLLWRIADEKFMINN FTISLDNIKSGRLHTLITNAFSHVDAWHIISNMLGLYFFGTNVVSNFGPGFLLKLYLAGAVGGSVFYLVHQAYKAQSSKG WRFSNHSKELALGASGAVNAVMLLQIFLFPKATIYFDLFIPVPAILLGVFMIGKDMLRIMEGDTSISGSAHLGGATVGAI AWALVRKGRF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 133 | 133 | - | – | |
| PANTHER | 28 | 329 | 302 | 1.3E-78 | – | |
| PANTHER | 28 | 329 | 302 | 1.3E-78 | – | |
| Gene3D | 132 | 326 | 195 | 2.8E-22 | ||
| SUPERFAMILY | 132 | 328 | 197 | 1.31E-34 | – | |
| Phobius | 134 | 152 | 19 | - | – | |
| TMHMM | 135 | 152 | 18 | - | – | |
| Phobius | 153 | 172 | 20 | - | – | |
| Pfam | 168 | 327 | 160 | 6.3E-29 | ||
| Phobius | 173 | 199 | 27 | - | – | |
| Phobius | 200 | 210 | 11 | - | – | |
| TMHMM | 207 | 229 | 23 | - | – | |
| Phobius | 211 | 229 | 19 | - | – | |
| Phobius | 230 | 249 | 20 | - | – | |
| TMHMM | 250 | 269 | 20 | - | – | |
| Phobius | 250 | 268 | 19 | - | – | |
| Phobius | 269 | 273 | 5 | - | – | |
| Phobius | 274 | 293 | 20 | - | – | |
| TMHMM | 274 | 293 | 20 | - | – | |
| Phobius | 294 | 304 | 11 | - | – | |
| Phobius | 305 | 325 | 21 | - | – | |
| TMHMM | 306 | 325 | 20 | - | – | |
| Phobius | 326 | 330 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0255900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…