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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0256400 |
| Transcript ID | LotjaGi4g1v0256400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT1G69170.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6; TrEMBL-Plants: tr|A0A0L9TSL5|A0A0L9TSL5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0256400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:61086640..61091251) extracted from Lotus japonicus Gifu genome v1.2.
CACAAAGCAAACCTCTACAGTTTCAATGGAGTTTAGGAGACCGACGCAGCAGTGACACTATTTCAAGTTTCAAGTACACT TCTTCAAGTAAAGTGACACACTTTCTTTCTTTCTATCTATATCTCTTTCTCTCTCTCACCACTTGACTTGGGCAACTAGT AGTTTTCCTTTTCTCATCCCCTCAATGTCTTTCTCTTTCAGTACAATAATACTACTATATGGATTCTGTGTTATTTGCCT CCTTCATCTCCTCTGCTTAAGCTGACACACTCTTTTCATTCATCATCATCATATTCACCCCCTTTCTTTTCGTTTCTCTT CACGTGCTCCTCTGACATTTTTCTGCTCTCTTTCTTGCCTCCTACTTGGGTTAATCTTCTCTTCTTTTTCTCACCTTTTC TTTTTTATTTATTTGTCAGGAATGAACATGAACTACAACAAAAACTTGTGGCTTCAGGGAGAGTAACCAAAAATCTTTGC TGCTTTTCTCTGTCTGTTTTGTTGGGCACTCGTTTGTCGTGGCCTGTGTACAACAAAAATGCTTTTTCAAGCCTCTCCAA TGGTTCCTTTCTGAGGCTGAAATTTAAGCTCAACTTTTTTAGCTACAGAATCACTGTTAAACCGAACTGGCTTCTTGTTT CTTTCTCACTTTCTCTCTTGCTTCCTGATTCTGTTGCATGTGATGGAATCTTGGAGCTTTGTCTCTGAGGATCAAAAGGG GTATTCACTTTCACCTCCCAACACTCTTGGTAGAAGTAAAAATTCATTCTTAGGCTGGGAATTGAACACCCCTTGTAGTT TTTCCACCGACATCAACATGAGTCAGCAAAACGTTGATAATCAACCAACTGAGGAATTGGGTTTTCCTGATATGTTGGGT GGGAAACAGCAATTTTCTGATCATGATCTGGTTTGCAGTGTTCTCAACAGAGGTGAATCAAATTCCTCCAAGCTTACTTC AAACTCTGTGGCGGTTTCTAACGGTCGGGATTCCTTCATTGATTTGAAGCTGGGGCGTTTTGCTGATCATGGAGATTCAC ATGCCTTTGATTCAGGATTTTCCAGAAGAGTTCCTATTTTGTCTTCTTCTGAGTCATCAACACCACCCAAGAGAGTGAGA GCTTCAGGGATGCACTCTCAGACTGCATATTGTCAAGTCTATGGCTGTAACAAGGATCTAAGCTCATGTAAAGACTATCA CAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCCACAGTTATTGTGAATGGAACTGAGCAGAGATTTTGTCAGC AATGCAGTAGGTTGGTCAATTTTTCATGATTTCTTCTCTGGAATCTTTGTTAATTCAAGGCTGTTTTTGTAAGCTGAATT TTTGTTGATACACAAACTTATTTTACCTGCTTATAGCATGTTTGAATTGGCTACTATTGTCCTAGAATAAATTTGGACAC CAGAAACTACTTAGTTCATGTTTGAATACATGGACGGTGAGAGTCAAAATCACGATGGACTGAACCAAAGTAACTTGCCT TAGCTTTTGGAGCTATCCATTGTGATTTTGGTCAGAAGCTACTTAGTCTATGTTTGGATACACGGAAGTGAGTCAAAATC ACGGTGGCCCAGACCAAAGTACCAGGATTTTGGCTTTACCGTGGTTTTCCATCATGTATCCAAACAAAACTTTCTTAGAA TTGATTTTGGCTTTAGAATCAATTGTAGAAGAATTCCAAACACACTATTGTTATGCTTATGAACTGTAAATTGTTGCTCC ACTAACTTTTCTACTTCACTGAAATGGACAAGCTTGAAATAAGAAGCTGCGTTGGTATATGATGTATAGTTCTGCTGAAA TGTTTTGCTTGTTATACAGGTTTCATTTGCTCACTGAATTTGATGATGGTAAGCGCAGCTGCCGTAAACGCCTTGCAGGC CATAATGAGCGGCGAAGAAAACCACAATTGGGTATTCACTCCGGAAAGTCCGGGAGGTTGCTTCAGCCATGTGGTGGTAC TGATATAACTCTGCTCTCTACTTCACACTTCCCTTTACTCTCATGGTCCCGTTCCTCCTTTTGGCTTATGCACATTCATC ATTGCATTCTTCAGTTATTAAGTTCCATGTAATTGACTGCTTAACTATAAGGAAAATGCTTTTGTTGGAAAGGTTTTTCA TGTGTACTAATGAATATTAGGCTAAATATAAGTGAACGGTTTCACAGTTACTTTTAAACAACTTCACATAGACCAGACCC AAGATTTGTCATACATTACTTCGTTTTGTGCTCACCTTCATCAGAATCATGACGATCTTTTAGTAAATAGCATTTTTTCT TTTCAATAAAGGATTCATTGGATGTGTGGTGGATGTAAACCATAAAAGCATGTTTTCTTTTCAGTTGTCTTTAAGTGAAT GTGGATCCATGTTTAACCCTTGTTTCACGTTTGGTGTCTGGGAAAGTCGGATCTCAGTTTCCAAGCAAATGAACGTGCTT TCAAGCAAAAGCAAACACACCCTTATTCAAAGAGAATAATGGTGTTATCACTGAGGGGAAGAGATTTTCTGTCACTAAAC ATGCCCCCCCTCAGGAACTATGTTTTCTCCTTATGATCAATCATTAACTTATACCTGTTTACTAATAGAATGAAGTCTAA TTGACAGTAATTAGTTCCCTACTTACCTTTCATAATACTAACCTTAAGGTTCCAGCATATATCTTGGCTGTTACTACTCA TTTTCTATCTGATTAAAAGGCGGGAAAAGGGTGAAGCCAACCTTAACTGTGATAACTGATGCCAATTTTCTCTGCTTTTG CAGTCATTATTTGATATCGGAAAAATGGTTTGATTTAAAGTTTTATAAAGATCTTATGGTTCTTGCAGATAGCAGATTCC AGGGAACAAAGCTCACACCAGCATCTTTTATCGTCCCAGAGATGCTCCCTAGTGGGATCATGCATCCTGAGAGATATGAA ATAGGTGGCTTCTGGAGACCTATAATAAAAGCAGAATGTGGGGGTGGCTTTAAACATCTTTCTTCTATGTCTATTACCAA TGGACATCCTATGTCAAGATCTCTATTTCCTTCACACAACCAAAAACAATTTCCCTTTCTTCATCATGAAAATGGTGCCG CGTCCACTACCGAAAGCATCTTCTGTGATAGCAATGGCCAATATCCACCTTCCCTCGGGGCTGCCCAAAATTCTGGTTTA CGACCACTATTCCACGACACCTCCTTAGGAAGTGAGGACTTCAATGTTTTCTACACACCATCAACTGTTCAGGGATTATC GGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCACAATCCCAGAACTCGCCAAGCCAATCGTCAGGAATTCCTT TGGCTCACCCCTTTGTTATTCCCAGCAGCCATAGCCATCACTACAGCATGAGTCAGGTCTCGGAAAAGATAGGAATAAGC TCACACACTTCTTCAAGCCGTGTGTCGGATGGGTTTCCATCAGAACTAAATCATGCAGATGGAGGTAATCTCGGTCCTGC ATTGATATCAGACAATCATGATATTGTCCACTTTGGAATGGCAGATGGGATTTTCCAACAATCAGATTTTGTGAGCGTGA AAGATCGTCTTTCCTGTGAAGATGATGCGACCATTGACTTGCTCCAACTGTCATCACAGCTTCAGCGAGTGGAGCATCAG CGGCAATCCTTGCAGCTAAAGCAAGAGAATGATTCTCCGTGCACTCTCCGGATTACTTAAGGTGCCTTGAAATGGTATGT CGTTCTGTTTTGTTAAATTTTACAAACTGTTTTCTCCATGCAAACTATGTTCGCACTAGATCAAGATCCTCCGAGGCTCC GACCCCAAATGGTGTCTCATTCTCTATCCCACCAATGAGATTGTGACATGTCAATTAAAAGCCATCCATGTAAAGTTTTA AATTTCATATCCTTGTTTTTTTTAATTGGCATGACATAATTTCATTGGTTGAGACATAAATGATAGTACATCTCATTTGG GAACAGAAGATCTCAATCAGTTAGCACTTTGCTCCAGACAAACTTGTTTTGCACTAGCCTGAAATCATGTTTCATTTGAT GCAGGGTAAAAGTTGTGCAGCATGTGACATACACCTATGCCAATCATCTTAGACAATGTAGAAGACAAGGAAGTAGAAAC TTGGTGCTATTCCCATCAGATGCTAACTATTTGGATCAATTTGGTTGTGCTGATTTGGAGGAAGAACTTGTGAGTAGAAT AGCTTACCGTGTAATCACGTGAGGCTACATCAATTTTTGTTTGTTGGGACTAAAAAAGTTGTCCCTCTCAGTCTTAATTT ATCCATGCGGATGTAATAAACTAGAGCCTTAGATGCATCAAAATGTTCTCTTCTGGGCATAAATACTGATACCCGATTTC ATGAATCTGTCATTGACTTTTTTAAGGTCATAATGAAGTGTTAATGCTATGCAGTAATGTGAACCAAACAGTAGAAGATA GCTTCATCATGTTAGATCAAGGAAGATAAGGAGTTTTCCTTTTTTTAATGAAAGGGTAATGATACATCACTCTGACAGAG GCAGAAGGAAATTCATCAATCCACTCTGGAAGAGGCCAGACCAACTCACAAG
CDS sequence (LotjaGi4g1v0256400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTTGGAGCTTTGTCTCTGAGGATCAAAAGGGGTATTCACTTTCACCTCCCAACACTCTTGGTAGAAGTAAAAA TTCATTCTTAGGCTGGGAATTGAACACCCCTTGTAGTTTTTCCACCGACATCAACATGAGTCAGCAAAACGTTGATAATC AACCAACTGAGGAATTGGGTTTTCCTGATATGTTGGGTGGGAAACAGCAATTTTCTGATCATGATCTGGTTTGCAGTGTT CTCAACAGAGGTGAATCAAATTCCTCCAAGCTTACTTCAAACTCTGTGGCGGTTTCTAACGGTCGGGATTCCTTCATTGA TTTGAAGCTGGGGCGTTTTGCTGATCATGGAGATTCACATGCCTTTGATTCAGGATTTTCCAGAAGAGTTCCTATTTTGT CTTCTTCTGAGTCATCAACACCACCCAAGAGAGTGAGAGCTTCAGGGATGCACTCTCAGACTGCATATTGTCAAGTCTAT GGCTGTAACAAGGATCTAAGCTCATGTAAAGACTATCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCCAC AGTTATTGTGAATGGAACTGAGCAGAGATTTTGTCAGCAATGCAGTAGGTTTCATTTGCTCACTGAATTTGATGATGGTA AGCGCAGCTGCCGTAAACGCCTTGCAGGCCATAATGAGCGGCGAAGAAAACCACAATTGGGTATTCACTCCGGAAAGTCC GGGAGGTTGCTTCAGCCATGTGGTGATAGCAGATTCCAGGGAACAAAGCTCACACCAGCATCTTTTATCGTCCCAGAGAT GCTCCCTAGTGGGATCATGCATCCTGAGAGATATGAAATAGGTGGCTTCTGGAGACCTATAATAAAAGCAGAATGTGGGG GTGGCTTTAAACATCTTTCTTCTATGTCTATTACCAATGGACATCCTATGTCAAGATCTCTATTTCCTTCACACAACCAA AAACAATTTCCCTTTCTTCATCATGAAAATGGTGCCGCGTCCACTACCGAAAGCATCTTCTGTGATAGCAATGGCCAATA TCCACCTTCCCTCGGGGCTGCCCAAAATTCTGGTTTACGACCACTATTCCACGACACCTCCTTAGGAAGTGAGGACTTCA ATGTTTTCTACACACCATCAACTGTTCAGGGATTATCGGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCACAA TCCCAGAACTCGCCAAGCCAATCGTCAGGAATTCCTTTGGCTCACCCCTTTGTTATTCCCAGCAGCCATAGCCATCACTA CAGCATGAGTCAGGTCTCGGAAAAGATAGGAATAAGCTCACACACTTCTTCAAGCCGTGTGTCGGATGGGTTTCCATCAG AACTAAATCATGCAGATGGAGGTAATCTCGGTCCTGCATTGATATCAGACAATCATGATATTGTCCACTTTGGAATGGCA GATGGGATTTTCCAACAATCAGATTTTGTGAGCGTGAAAGATCGTCTTTCCTGTGAAGATGATGCGACCATTGACTTGCT CCAACTGTCATCACAGCTTCAGCGAGTGGAGCATCAGCGGCAATCCTTGCAGCTAAAGCAAGAGAATGATTCTCCGTGCA CTCTCCGGATTACTTAA
Protein sequence (LotjaGi4g1v0256400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESWSFVSEDQKGYSLSPPNTLGRSKNSFLGWELNTPCSFSTDINMSQQNVDNQPTEELGFPDMLGGKQQFSDHDLVCSV LNRGESNSSKLTSNSVAVSNGRDSFIDLKLGRFADHGDSHAFDSGFSRRVPILSSSESSTPPKRVRASGMHSQTAYCQVY GCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGTEQRFCQQCSRFHLLTEFDDGKRSCRKRLAGHNERRRKPQLGIHSGKS GRLLQPCGDSRFQGTKLTPASFIVPEMLPSGIMHPERYEIGGFWRPIIKAECGGGFKHLSSMSITNGHPMSRSLFPSHNQ KQFPFLHHENGAASTTESIFCDSNGQYPPSLGAAQNSGLRPLFHDTSLGSEDFNVFYTPSTVQGLSGISDSCALSLLSSQ SQNSPSQSSGIPLAHPFVIPSSHSHHYSMSQVSEKIGISSHTSSSRVSDGFPSELNHADGGNLGPALISDNHDIVHFGMA DGIFQQSDFVSVKDRLSCEDDATIDLLQLSSQLQRVEHQRQSLQLKQENDSPCTLRIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 22 | 538 | 517 | 3.2E-225 | – | |
| PANTHER | 22 | 538 | 517 | 3.2E-225 | – | |
| Gene3D | 147 | 218 | 72 | 3.8E-34 | ||
| ProSiteProfiles | 154 | 231 | 78 | 32.547 | ||
| SUPERFAMILY | 155 | 235 | 81 | 2.65E-39 | ||
| Pfam | 157 | 230 | 74 | 3.3E-31 | ||
| MobiDBLite | 223 | 242 | 20 | - | – | |
| Coils | 506 | 526 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi4g1v0256400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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