Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0257400.1

Overview

Field Value
Gene ID LotjaGi4g1v0257400
Transcript ID LotjaGi4g1v0257400.1
Lotus japonicus genome version Gifu v1.2
Description O-fucosyltransferase family protein; TAIR: AT5G15740.1 O-fucosyltransferase family protein; Swiss-Prot: sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910; TrEMBL-Plants: tr|A0A072URS3|A0A072URS3_MEDTR GDP-fucose O-fucosyltransferase-like protein; Found in the gene: LotjaGi4g1v0257400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:61267165..61271895) extracted from Lotus japonicus Gifu genome v1.2.

CACAAGACTACAAGAGACCCTTGTTATAAATACAGCTGGGTCTGGTTCATACAGTACTGGTACTGGTGTGGGAGTGTGTG TGGGACAAGCCAAGCCAAGCCAAAGCCAACCAAACCAAACCAAACCAAACCCTGTGAGCTTAACCATGGTTAAGTCAGCA CGGGTGTTTGTGACCATGTGTCAACCCCGAATGTCTTTGTGTTTTTGCGTTTCATTATTCTCCATTTCCTCTTTTTCCCA CCCCCTCCACTAATCAACTCCGATCACTCTCCGCCGCCAGCCACCACGCTCCGCCGCCGCCGCAGCATTCTCAATTCTCC CCTCACACGTTTCCATTCCACGAAGATCCATTTTCTTCTGCGGTTACTGTTTCTACAAGCGTTGTTGTGGTTGTTCTTCG CTGAAGAAGAAGAAGAAGAAGAATCATCCCTCACCGGAGAGAGAGAAAAAACAGTGTAATGCGCGTCGGAATTCAACTTC GTTGATGCTATTTCTTCTTCTTCAACTGTTGGCATTGGCGGATGATACTATTCTCCTGATTCCTGAGTTCATCGATCCGG TGTCGTTTCGGGGAAGCTCGGATCTCGCGGATTTCCTTGATTGAATCCACATTTTAGGGTTTCTGGTGCGGTGAGATGTG TAGGCCGGAGAGTAAGAACAACAGGTGGCAAGATTTCCGTTGGATGGGTACGAAGGTGGAGAAGGAGAGAGGTGGACCAG GTTCAGGGTCATCGTCATCTTCATCTTCTTCATCAAGGTATAGAATGAAGCTTTGGTTGATACGCGGAACCGCATCGATT TTGTTGTGGACTTGCATCGTGCAGTTAACCGCTTTTGGTGATATGGGGTGGGGGCCGAGAGTGTTGAAAGGTTGGCCTTC TTGTTTTACTCACGACGACGAATCTTCCGCCGTCAGGGAAATCGACAGCATTGAGCTTCCATCTTCACGTCCACCACTTC TCCCTCCTAAGAGTGTGTATTGTATTTCCCTTCTTTGCTGCTTAATTTCATGCTTTTCGAATTTGTTTTTACTTGATTTC ATGGTGTTCATGTTAAGTTTTGTTTTGTTGTTGTTGTTGTTGTTGCATAAATTGAGGTGTTTTTGTTTTGTTTTTCCCCT GAAATCAGGACTTTACAAGAACAATGGGTACCTTATGGTGTCGTGTAATGGAGGATTGAATCAAATGAGAGCCGCGGTAA GTGTTTGACGCATCACACATGCGGTTAGCTTGTCTTGTTTTCCGGTTGCTTTTCTGATTTGCTGATTCAATTGTATAGAT ATGTGACATGGTGGCAATTGCAAGATATTTAAATGTCACGCTTATAGTCCCTGAATTGGATAAGACATCCTTTTGGGCTG ATCCGAGGTGAGTCTCGCCTCCTTCAATCAGTTTATGTTTCAGAATTCAGAGACAACCTTATCGATGTTGGTGGGATTGA AGGAATCCTGCCCTTTAATGTTGAATGAGGATCAATTCTGAATGATGTTTGTTACTTTTATGTCTCAGTGAATTCCAGGA CATATTTGATGTGGATCATTTTATCACGTCCTTGAGAGATGAGGTGCGGATATTGAAAGAGTTGCCTCCTAGAATCAAGC TGAGAGTGGAACAGGGGTTACATTACAGCATGCCACCGGTTAGCTGGTCTGACATATCTTACTATAAGCACCAGGTCAGT TTGTGGTATCCCTGAGCCAATTAGAAACATGCTTTAGCCTAAACAACTATTAGCTTAGCTTGTGATTGCAACTTTTGGGC CGTGTAACTCAATTATGTTTTCTTACAGTTTCTCCTTTGCTAACTTAAGGTAAATGACATGTTAATTCTTGTAGATTCTA CCCTTGGTACAAAAGTACAAAGTTGTGCATTTAAATCGAACTGATGCTCGTCTGGCCAATAACGGTCAGCCTATGGAGAT TCAGAAGCTGCGCTGCAGAGTTAATTTCAGTGCTTTGAGATTTACTCCTCAAATAGAGGAGTTGGGGAGAAAGGTGATCC AGCTTCTAAGGAAAAATGGTCCATTTCTGGTCCTTCATTTGAGGTATGAGATGGACATGTTGGCATTTTCTGGCTGTACT CAAGGTTGTAACCGTGATGAGGTTGAAGAGTTGACAAGAATGAGGTGATTATTAGCCTGCATAATTTGCAGTTCCATAAT CATAATTTAATTTTTTTTTCTGTCACTTGGGCGTTGAAAAGGGATTTGGTATAAATCTCTCAAATTTGAATTTTTGGTGC ATTGGCAGATATGCGTATCCTTGGTGGAAAGAAAAAATAATTAATTCTGACTTGAAAAGAAGAGACGGCCAATGTCCCTT AACACCTGAGGAGACTGCCCTTACGCTTAGGGCTCTTGACATTGATCGGAGTATTCAAATCTACATCGCAGCTGGGGAAA TATATGGTGGGGAAAGGAGAACGGCAAGTCTTTTGAAGGAGTACCCGAAATTGGTAATTTTTAAAGTTCAAGGCCACATG GTGAATTCATAATGTTTGTCATTGTTTGATGTCCTTACCATTTGCTTTTGTGCTCTTTTAAAACAGGTTAGGAAGGAAAC ACTGTTGGAGCCATCTGACCTTCAGTTCTTCCAGAATCATTCATCTCAGATGGCAGCATTGGATTATCTTGTCTCATTAG AAAGCGATATTTTTGTCCCTACGTATGATGGAAATATGGCAAAAGTAGTTGAGGGCCATCGCAGGTATAATTCTGCTATA AAATACATTATTTTTGTGCCTAAGCTACTTTCCATTGCTCCTTGGCATCTCTACCAATTCACATACTAGTAAACTGGTCA TTTTAACATTTCGTGGGTAATGCTCGAGTGTCTTGTTGAAATACTAAAAATATTTTTCTTCATACTGATACAATATTTGT ATTCACATCATCTGAGCGATCAAAATGCATTTTTTGTCACTTAGTTATGATCCAAACCACAATTTCTGGCATAGTTTAGT TTCAGCGTCTCCCATTATCAATACCACTTTGCCAAGTGAGTTGACTTTTTGCCCTCCAATGCTTGTGCAGATATCTCGGG TTCAAGAGAACAATTTTATTGAACAGAAGGCTCCTAGTTGATTTGATAGATCAGTACAACAATGGAGTACTGAACTGGGA TGAATTCTCTTCAGCCGTGAAGGAATCTCATGCTGATCGCATGGGCAGCCCAAGTAAAAGGTTGGCAATCCTTGACAAAC CAAAAGAAGAGGATTATTTCTACGCCAATCCACACGAGTGTTTAGAACCATCAAATGATCCGTTCAGTAGTACGTGACTA ATGCGTTCTGGAAGTAATGAAATTTACTTGTGCCATCTCCTGATGCACTTGGTTTTCTGCCACGGATATCGAGATAGTTC TCTATGCAGTTTTAGCACAGATGAAAGCTTTTTGTATCAAAGAGGCAGCCATGGTGACCCCAGGTTGGGGATGGAATAGC CTTCACAGAAGTTCTAGTCACGCAAAGAAGCTAAGGGGATACCTTATATTATATATATATGCAAATAATCCATCACATTC ATGTATAGAAGGTAGAAGCTACCCTGCCATTACAGGGTGATAGCAGTTCAAACAACATTGTACAAGGAGGACTTCTTACA AATTTGGATAACAAGAACTGCAGTTCATGTAAGCTTAATTCATTGGTATTTGCTTCTCTTTTTCTAATTTTCTTATATAA ATATATACTTTTTTTCTCTCTTTTTTTAGTCCACCACCATCATTGTGATTTTCAGGATTATACAGTATAACAATTTGTTT GTTCGTGTACTATTGACTCCTATTTCATATTTTTTTTTTGGTCTGATGGGGAATACTAGCTAGGCTGGATGGTCTTTTTG TATTTTCTATTCTCTCATTTTTATTTATACTGACAATGAGTGTCATTGATAACCAATTCTTAATTGCTACTAATTGCAAA CTTATCTATCTATCCTAAGGTAGATCAAAAGGGAATTCTTCTCCTCTTGTGACTATCTAGCATGTCATTGTCTTGCTTGT AAGGTTATATTAAATTGGTAAGCTGGAATTTTCATTGTTTGGACTTTGAAGCCTATGTTCCTGAAAGAGACAAGCTACAA ACGCATCCAATAAAAGTGGTGCACTGTTATATTCTTTATTTTATTTCACTTGTGGTTTTTGGAGGAATATGCTTTGTTTG ATCTTGCAAGTTTGTTGATTGTATTGGACCAAACGAATGCGGCTACAAGAGTATATTTATTTATTTATTTATTTATAGAT TCTGTATTATTTTTGGTACCTAGCTGGAAGATCCTCTCAATTTTGATTGGTTCCACCCCCATCACCATCAAATTTTGTTA TTTTGTTGGAAAATTAACTTGCCCATTTTCCGATCCAATGTAACCGGGAGAAGAAGTATGCACCAATCTGTTCATTACAA AATATTATCTATAATATTTTAAAGTGAGATATCATTAGCTAATTCAATTTACAAACTCGAATAGCCTATAAAAAACTGAT AATAAACCATTATTTTTTAACTTTGAGGTTATCAAATGTGAGCATGGCCATTGTCATATGAAGCCATTATGCTTTGCTGT CTGTACTGGTCTGAGGCCTCAATGTAATGTACTCCCTCCGTTCCTATATATAAGTCTCAAATAACTAATTCTTTTAGATT AAGAAAAGTAGTTACTAGTAATAAATTTGTAAAAAAAATGATTTATTTTCCTAGATTACCCTTATTTACTTTCCTATGAT TTTCTCTCTCC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0257400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGTAGGCCGGAGAGTAAGAACAACAGGTGGCAAGATTTCCGTTGGATGGGTACGAAGGTGGAGAAGGAGAGAGGTGG ACCAGGTTCAGGGTCATCGTCATCTTCATCTTCTTCATCAAGGTATAGAATGAAGCTTTGGTTGATACGCGGAACCGCAT CGATTTTGTTGTGGACTTGCATCGTGCAGTTAACCGCTTTTGGTGATATGGGGTGGGGGCCGAGAGTGTTGAAAGGTTGG CCTTCTTGTTTTACTCACGACGACGAATCTTCCGCCGTCAGGGAAATCGACAGCATTGAGCTTCCATCTTCACGTCCACC ACTTCTCCCTCCTAAGAGACTTTACAAGAACAATGGGTACCTTATGGTGTCGTGTAATGGAGGATTGAATCAAATGAGAG CCGCGATATGTGACATGGTGGCAATTGCAAGATATTTAAATGTCACGCTTATAGTCCCTGAATTGGATAAGACATCCTTT TGGGCTGATCCGAGTGAATTCCAGGACATATTTGATGTGGATCATTTTATCACGTCCTTGAGAGATGAGGTGCGGATATT GAAAGAGTTGCCTCCTAGAATCAAGCTGAGAGTGGAACAGGGGTTACATTACAGCATGCCACCGGTTAGCTGGTCTGACA TATCTTACTATAAGCACCAGATTCTACCCTTGGTACAAAAGTACAAAGTTGTGCATTTAAATCGAACTGATGCTCGTCTG GCCAATAACGGTCAGCCTATGGAGATTCAGAAGCTGCGCTGCAGAGTTAATTTCAGTGCTTTGAGATTTACTCCTCAAAT AGAGGAGTTGGGGAGAAAGGTGATCCAGCTTCTAAGGAAAAATGGTCCATTTCTGGTCCTTCATTTGAGGTATGAGATGG ACATGTTGGCATTTTCTGGCTGTACTCAAGGTTGTAACCGTGATGAGGTTGAAGAGTTGACAAGAATGAGATATGCGTAT CCTTGGTGGAAAGAAAAAATAATTAATTCTGACTTGAAAAGAAGAGACGGCCAATGTCCCTTAACACCTGAGGAGACTGC CCTTACGCTTAGGGCTCTTGACATTGATCGGAGTATTCAAATCTACATCGCAGCTGGGGAAATATATGGTGGGGAAAGGA GAACGGCAAGTCTTTTGAAGGAGTACCCGAAATTGGTTAGGAAGGAAACACTGTTGGAGCCATCTGACCTTCAGTTCTTC CAGAATCATTCATCTCAGATGGCAGCATTGGATTATCTTGTCTCATTAGAAAGCGATATTTTTGTCCCTACGTATGATGG AAATATGGCAAAAGTAGTTGAGGGCCATCGCAGATATCTCGGGTTCAAGAGAACAATTTTATTGAACAGAAGGCTCCTAG TTGATTTGATAGATCAGTACAACAATGGAGTACTGAACTGGGATGAATTCTCTTCAGCCGTGAAGGAATCTCATGCTGAT CGCATGGGCAGCCCAAGTAAAAGGTTGGCAATCCTTGACAAACCAAAAGAAGAGGATTATTTCTACGCCAATCCACACGA GTGTTTAGAACCATCAAATGATCCGTTCAGTAGTACGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0257400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCRPESKNNRWQDFRWMGTKVEKERGGPGSGSSSSSSSSSRYRMKLWLIRGTASILLWTCIVQLTAFGDMGWGPRVLKGW PSCFTHDDESSAVREIDSIELPSSRPPLLPPKRLYKNNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSF WADPSEFQDIFDVDHFITSLRDEVRILKELPPRIKLRVEQGLHYSMPPVSWSDISYYKHQILPLVQKYKVVHLNRTDARL ANNGQPMEIQKLRCRVNFSALRFTPQIEELGRKVIQLLRKNGPFLVLHLRYEMDMLAFSGCTQGCNRDEVEELTRMRYAY PWWKEKIINSDLKRRDGQCPLTPEETALTLRALDIDRSIQIYIAAGEIYGGERRTASLLKEYPKLVRKETLLEPSDLQFF QNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRYLGFKRTILLNRRLLVDLIDQYNNGVLNWDEFSSAVKESHAD RMGSPSKRLAILDKPKEEDYFYANPHECLEPSNDPFSST
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 46 46 - –
PIRSF
PIRSF009360
8 506 499 1.2E-178
IPR024709
PANTHER
PTHR31741:SF64
31 514 484 4.4E-286 –
PANTHER
PTHR31741
31 514 484 4.4E-286 –
TMHMM
TMhelix
46 68 23 - –
Phobius
TRANSMEMBRANE
47 68 22 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
69 519 451 - –
Pfam
PF10250
120 440 321 2.1E-74
IPR019378
CDD
cd11299
120 445 326 1.66495E-161
IPR024709

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0257400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…