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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0261500 |
| Transcript ID | LotjaGi4g1v0261500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin, putative; TAIR: AT1G18530.1 EF hand calcium-binding protein family; Swiss-Prot: sp|Q9FZ75|CML15_ARATH Probable calcium-binding protein CML15; TrEMBL-Plants: tr|I3SUX2|I3SUX2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0261500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:62450384..62452715) extracted from Lotus japonicus Gifu genome v1.2.
CACACTTCTCAAATTGTAAAAAATGATCCCAAATTATCAAAGATACAATCATACAAAGCACCTATGATTAAATTAGTGCT AAGAATCTTGGACACGACAATTCCTCTGAGTTTCCTAGAAGTCAATGAAAAGGTTCCACACTTCCACCGACGCGTTTTCC ATTCACACACTTCCCTTCAAAAGAATAGAGAAGAAAATTTATATCAGTCCTTCTATTCTCTTCAACATATCTATAGTTCT TTTCTCTGCATTGCCAATTTGCTATATCATTCTTTTGCAGTTAGAGACTAACATCAACTTTCCATTTGGGGGACATAATA TTGTGATTCTTATTTTGCTCCCTCTATTGATATTGAACATGTCAAAGCTCCAAGTTCAACAACTCAACCAGTTAAGGGAG ATTTTCGCGCGATTCGACATGGACTCAGATGGCAGTTTAACCATGTTAGAGCTCGCGGCGCTTCTCCGGTCACTGGGGCT CAAGCCCTCAGGGGACCAACTCCATGATCTGTTATCCAACATGGACTCAAATGGCAATGGTTCTGTGGAGTTTGATGAAT TGGTGAGGACCATTTTGCCTGACTTGAAGAATAATGCAGAGGTATTGCTGAATCAAGAACAGCTTCTTGATGTGTTTAAG TGCTTCGATCGCGACAGCAATGGCTTCATTTCAGCTGCAGAATTGGCGGGGGCAATGGCCAAAATGGGCCAGCCCCTCAC GTACAAAGAGCTCACGGAGATGATCAGAGAGGCTGACACGGATGGTGATGGTGTGATTAGCTTCAATGAGTTTAAAACCA TCATGGCTCGCTCTGCCTCTGATTTCTTAGGCCTCAGCAATTGGAAAACTGAGCTTCAGCAATGAAATTGAACATGTTTA TTTCACTAACTAATTATAGATTCTTGATTTTTTTTTTCTTGTTGGATGTGTAGCTTGTGATGTAATGATTTTTGTGGTGT GGTTTCAATTAGAACCATGGAATGGAATGAAATAAGGATATCCGGTTTGCCTTACATTATGTACATTAGTAGTAGTACTC TTGATATTCTTTATTTCAGCTAAATTGAAGAGCTCTCTTTTTCCCTTTTTGTTGATAGATCTGGGGTTGGTTCAGGATAA TATTCTGAGGAATCACTTCTGCCATCCCCTTTCCTCCCTTGAATCTGAATTTTGTTTGGATGTTTTTTGTTTACAACTCA GTTCCACCAACATGTAGAGAGATAAGAATGGAAGAGAAAGAAATATGAGATATGATTAGTGATGTTTTAGGAAAATGAGA ACAGATAGGAAGAGAAAATTAGTAGGAATGTATCAAAACTCATTTTGTTTTTATGGTTTTAAGAAGAGTTTATTTATGAG TACCTCTTTGATATATCAGAAGAGTATATAAACAATTGAGAGCATATCTTACTGAGTTACAGTTTTAGTATTTTAGATCA TCTGGTTCCTGTATTTTTTTCTTTTCAATATGAAGCATGATGGCACATATCTAGATGATCATTTGTTGATGTTAACCCTT CCTGATAAGAAATTTAGAACCAATGTACCAACTTTCTGAAAGTCAAATTATTTACAAGCATATTCCAACAAAGCAGTTTA TTATTTTATTGTTCAAAATAATAGTCAATGCATCAAGAAAGCCAGTTAGCATATCCAGCAATGAACATGAGCTGAACTGC TTATGTTAGCAGTTAAATCCCAATCAAGAATTTTCCCAATTTCTCTCCTCATTGAAGGACAAAACCAAGCTTTGACTTCG CTCACTATCAGCCGGATCCATCACCAGCTGGAATCAATTGCTGCAGGCTTCCCTAGACAAATATTTTCGTTCAAGCAAGA CGGCAAAATTAAGGAGTCAAATCACCTGATTCCATTAAAAAAAGTCAGTGAATCATTATTTGATTCATAAGATCGGTGTA AAGAAATCTTTCAGATGTACCCCCACCATGGTTTTGAGTGGTGGCTCATCGTTCATGCTATCTATAATGGGCTGGCTTAC TCTTCCAAAGTCCAACTCAATGTTGCTGCTGGTTGAACCCTAATGCACAAGAACCTAGATTAGAGTTTTGAGCTCATTGA GAACATAGCCAAAAATCACCACTAATAGACTAATGAGAGATATTCTTTATTTTAGCTAACCTTTAGAGCTCTCTTTTTCC TTTGTTAATAGACCTGTGGTTGATGGAGGACAATATTCTGAGGAACAACTTGTATCACCTCTTTTCCTCTCTGGAATCTG AATTTTGTTTATATGGTTTTAAGAAGATTTTATGGTTCCCTCTTTGATTTGTCAGGAGAGTAAATTAACCATTGAAAGTA TATCTTGCTGAG
CDS sequence (LotjaGi4g1v0261500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGGTTCCACACTTCCACCGACGCGTTTTCCATTCACACACTTCCCTTCAAAAGAATAGAGAAGAAAATTTATAT CAGTCCTTCTATTCTCTTCAACATATCTATAGTTCTTTTCTCTGCATTGCCAATTTGCTATATCATTCTTTTGCAGTTAG AGACTAACATCAACTTTCCATTTGGGGGACATAATATTGTGATTCTTATTTTGCTCCCTCTATTGATATTGAACATGTCA AAGCTCCAAGTTCAACAACTCAACCAGTTAAGGGAGATTTTCGCGCGATTCGACATGGACTCAGATGGCAGTTTAACCAT GTTAGAGCTCGCGGCGCTTCTCCGGTCACTGGGGCTCAAGCCCTCAGGGGACCAACTCCATGATCTGTTATCCAACATGG ACTCAAATGGCAATGGTTCTGTGGAGTTTGATGAATTGGTGAGGACCATTTTGCCTGACTTGAAGAATAATGCAGAGGTA TTGCTGAATCAAGAACAGCTTCTTGATGTGTTTAAGTGCTTCGATCGCGACAGCAATGGCTTCATTTCAGCTGCAGAATT GGCGGGGGCAATGGCCAAAATGGGCCAGCCCCTCACGTACAAAGAGCTCACGGAGATGATCAGAGAGGCTGACACGGATG GTGATGGTGTGATTAGCTTCAATGAGTTTAAAACCATCATGGCTCGCTCTGCCTCTGATTTCTTAGGCCTCAGCAATTGG AAAACTGAGCTTCAGCAATGA
Protein sequence (LotjaGi4g1v0261500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRFHTSTDAFSIHTLPFKRIEKKIYISPSILFNISIVLFSALPICYIILLQLETNINFPFGGHNIVILILLPLLILNMS KLQVQQLNQLREIFARFDMDSDGSLTMLELAALLRSLGLKPSGDQLHDLLSNMDSNGNGSVEFDELVRTILPDLKNNAEV LLNQEQLLDVFKCFDRDSNGFISAAELAGAMAKMGQPLTYKELTEMIREADTDGDGVISFNEFKTIMARSASDFLGLSNW KTELQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 31 | 51 | 21 | - | – | |
| Phobius | 52 | 56 | 5 | - | – | |
| Phobius | 57 | 77 | 21 | - | – | |
| TMHMM | 61 | 78 | 18 | - | – | |
| SUPERFAMILY | 74 | 229 | 156 | 2.29E-40 | ||
| Gene3D | 76 | 155 | 80 | 2.3E-18 | – | |
| Phobius | 78 | 246 | 169 | - | – | |
| PANTHER | 81 | 238 | 158 | 1.5E-78 | – | |
| PANTHER | 81 | 238 | 158 | 1.5E-78 | – | |
| ProSiteProfiles | 85 | 120 | 36 | 13.509 | ||
| Pfam | 88 | 147 | 60 | 1.4E-10 | ||
| CDD | 89 | 148 | 60 | 3.84831E-13 | ||
| SMART | 89 | 117 | 29 | 0.012 | ||
| ProSitePatterns | 98 | 110 | 13 | - | ||
| ProSiteProfiles | 121 | 156 | 36 | 9.297 | ||
| SMART | 125 | 153 | 29 | 3.2 | ||
| ProSitePatterns | 134 | 146 | 13 | - | ||
| Gene3D | 156 | 238 | 83 | 1.5E-24 | – | |
| ProSiteProfiles | 162 | 197 | 36 | 14.151 | ||
| Pfam | 165 | 227 | 63 | 1.7E-13 | ||
| SMART | 166 | 194 | 29 | 3.7E-4 | ||
| CDD | 166 | 228 | 63 | 5.7287E-19 | ||
| ProSitePatterns | 175 | 187 | 13 | - | ||
| ProSiteProfiles | 198 | 233 | 36 | 14.709 | ||
| SMART | 202 | 230 | 29 | 1.5E-8 | ||
| ProSitePatterns | 211 | 223 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi4g1v0261500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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