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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0269200 |
| Transcript ID | LotjaGi4g1v0269200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dynein light chain-like protein; TAIR: AT5G20110.1 Dynein light chain type 1 family protein; Swiss-Prot: sp|Q86A88|DYL_DICDI Dynein light chain, cytoplasmic; TrEMBL-Plants: tr|G7JVC8|G7JVC8_MEDTR Dynein light chain type 1 family protein; Found in the gene: LotjaGi4g1v0269200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63464208..63470844) extracted from Lotus japonicus Gifu genome v1.2.
TCCACGGGAGGCAATCCATTTTGACCTGATAACATCCACATTTTGGTAGAGTTAACTCTCCCAACAGGGTTATTTCCATA GACAAGTCCCGAACCTGAATCGAATATGTACGACTTGAATCAACTAACTTCGTAGGTTCAAAATCACAGCATCTGCCTAT GCTGTGTGGTGTGCTAGCTAGTGTCCAAAAACCTTACCACAAATTACCAAAGAGTCGATCTCTTTCTCATAAATGTTCAA CCAAACTTATTTCCTGGTCCTTATTGATTGTTGGTTAACCCCCAAAACGATATCAATCCAACAACGTGTAAGCATTCATG CTTGTTGCTAAAGACATGGGGAAAAATGTAGAAACTACAAAGTGGCAGATACAAGATAGTGACCATTTTATGGGGGTACC CAACAAATAGACGGTGGCAAGGGTAGGGGTCCGTGTATGCTGGCTGTCTAGAGGCATGCCACTGGGGGACAAAAATGCCC CAGAGACTAATCATTATTCGATTTTGAAGCATCAGACCAATATATATCAAATCTTATAGGTGAAATATATTAACACTCTC ATTTGTTATTACATCCTTGATCACAGGCACAAACACATGGGTTTCCCTTTACAAATATGTCAACTTCTTCTCAATAAGCA TTATTATAATAATTGCTCGAGATTCCAAAACATACCCTGTCAAACATTTATATATGTATGTATTTGCATTTCTCAATGCC TCATTAGTAGTTTCCATGTGGTGGTTCTAGTAATTGTTGTTCATTGATTCTCTAAAGAGTGTGCCTCAGAAATGGCTAAC CAAGACAAGAGAGGGTTCATGTACATTTACAAAGTTGGCATTGGAAATGGAAACCAGAGAAACAAAGAGCTAGAGCATGC TGTGGAGAAGGAAAAGAAATCGAAGTCGCGAAGCTGGTTGCAAAGGATAAGAAATCCGACTCGAACATTGAATAATGTTG AAAAGAGTGGCAACAGAAACTTGGAAGTTGGAGGATTTGTTGAGGCGAGGAAATCAACATCTTGCTTAGAGTTAGGATTA AGAGGAGGATTTGTGGAGGGAAGAAAGTCAGTGTCAAGCATGATAGAGGCATCATCATCACCAGCTGTAAAAGGGATCAT AGTTGAGGTAGGAAGAAAATCAGTGTCAAGCATGATAGAGGCATCATCTTCACCAGCTGTAAAAGGGATCATAGTTGAGG AAGGAAGAAAATCAGTGTCTCACATTGAAACAAAGTATGCTGCAGCAGAAAAAGCAAGAGGAGGATTTGATGAGGGAAGA AAATCAGTGTCTCAAATTGAAACATTTTCCTCTGTGGCTGCATATCTTCAGGTGAAGGTTTTGGTCTCAGACATGCCAAG CTTCATGCAAGTGCACGCCTTTCGTTGCGCTAGAAGGACACATGATAGCCAGGAAAAGTTTAGCAGCAAACACATAGCTC ATAACATAAAGAAGGTATGTATAGGAGAATCTGAGTAGAGATATAATTTGATAATGCAATGCTAATTACATAGTTTCCTA ATTGGGTATCACTTATATTTCATAATCTAGTATAGATACAGTTTCTCTTGTAGTATGCTTTAATTTGACCTCACCATTGA TGACCCTTGAATTAAGGTATTGGTTAATTTCACTCAATATAAAACTTCTGCCGCCATTTTCTCTATAGCTCCCTACTGCA AGTACTTAGCCTTGATTCTTAAGTTAAATGATTTAGATTGGTTAGTAAAAAGTTAAACTGGTCAAAAGTTGTAAACACTT GTCAGTTTGCTGCATAGGCAGCAGAGAATACGAGTTCAATTTCACTTCATCAAAATTCCCTTTAATATGGTGTTGTAGGG GTATGGAGTTAGGTGTTAGAATTATTAGTTCAGTAGATTGAGATGCAAAAGCCAGGAATGCTATTGAGAATATTTTTGGT TTTTCTTTTTGGAAGTTTGCTTCTTTGGATGATTGAGATATGTTCTATGAACCCCACAGAAGATTTAATGGTGAAAGGTG ACTAGACGAAACCTTGTGTTGAGACTTTCATTCTCTCTTCCTTTCTGTGTTTATTGGATAGAATAATTGAAGATGGTCCA ATACAATATTTATATCACTGATCTAGCAAACACCTATGAATGGATCTTATGATCTTGACCATTCAGAAGCTAATCTGATC AAATCTGAATCTGAATTACAAAATTCCCCAACACCCCATGTGTTCAACCCCCATGCCCCAAATGTTGTAGCTAATCATGC ATCTATTGATCTCAGAAAAAAAATGCATCCAATTAATGATATAATAATATTAGTTATCAGGTAGAGTCTCAAGTCCATGT GCACAGCAGAATTAAATAATTAAACAGGGTTTCTTCATTTATGTGTTTGGTCAGCAAGATTTATAAAATATATTGCATAC TTGTATACATAGTAGAAAATCTCCCTAAAGCTAAAATTATGGTGGAAAAAAACAAAAATTAAAGCAACTTGCTTTTACCC ACCATGATTTTGCCACACTGTAATTTTATGTCATGTATTTGAATATGCACATACAATTTCTCTTTTTCCAAAATAAAAAT GTTTTGGTAAATTCATTTGATTACAAATTTACATGTTATGTTCATGTGCAGGAGTTTGATAAAGCCTATGGTCCGGTTTG GCATTGCATTGTAGGCTCAGGTTTTGGTTCTTTTGTGACACATTCAAGGGGGTGTTTTCTTTATTTTTCAATGGAAAATC TATACATTCTACTGTTCAAGACCAAAGTTAAGAAGGCGGTGGATTGAGGTACATAATATATATTATCATATATAGAGAGA TATAGCAACGACTTTTCATGCTGGCAAAGTTTGTATTCAGATGTTTGTTTGTACATGAAAATTTAAATATAATCAAAGTT TCATTCATACAAATTGATTCTCTTTTGGTTTTGCTTCCTTGTTTTTTCCCTCAGATGTGTCAAATTAGTAATAGTATAAA ATCTGAAAGCTTATAAAATTGGGTTTCATTTTCTTATGGACCGGGAATCTGAGCACAGCTCATTTGGTTTATAATTCAGT CATGATAACAAGAGATATCTCATCGAATTTTTTATTAATTTAGAACACATTTTTCTTCTACTCATTTTTCTTCTGTTCCC ATTCACCGTCGCCGCTAGAATCCTCCTGTGAACCCACCACTTATCTCGCCTTGGCCAAATTAGCCCATTCAAGGCAAGCC CAACCCATCAGCTCATTCACGCATTACAAGAGAAGACTCGTTTTACCCACGCGCTTCCCAACTTTGCCACATGCGGCGTC GTCTGTAGGTTGATCTATGACCAGTAACACCATCCTTTAACTTGCCTCGGTGCTCATGTGGAGGGGGTTTCGCTGGTGAT GGTGGTGTTGGGTGGGAGTGGGATGAGAAGAAGGAAGAAGAAGATGAAGGGAATTATTGGTGCCTGAGTTTTGAAGATGA AGATAATGGTTAAATTTCTATGTTTAGGAGGGTTTTAAATTAATCAATTTATTTCCTTTTTTTAAAAAAATTTATAACAC TTGGCCTCATTAATCCCATGTGGCAATGTCACATGGGCAATCGGAGCTCCGGCGTTGACCTAGAGCTTCGGAGGGATGAA AACCAAATATTTTGGCAAATGTTAGGGACTAAAACCCACCTTTGCTCCGGCGAGGAACGAAAACCAAGCATTTTGTAAAG GATAGGGACGAAAAACTTATTTAAGCCTTTAAAAAATTAAAATTAAGAATAATTTACCATACATGTTAGGTGTCATGTTT TAAGATATAGAAATATCAAATATATACCCAAATTTTCCGGAGTCGAGGGGGTGGCATTTTTATAATTCCACCATTGTAGT GTCCTTTTCAATGTTTGTGTCATGTGGATTTTAGTTGTTTTTGGCATGCCCGTGTTGGTTGCTAAATGTACGTTTTGTTG TTCCGTTTTTGCCTTTTATAAGCTAAAACCAATTCAATTAGGTTACGTTAAGAAAAGTGAAGATACAAATTCAGCATTAT AGGAATGCCTTCCTTTTCGTTTTTCCCCATATAGGATGTAACCACCTTCATATGTTTTAGTTTTAAATCTTTCCTTCTAG TTTGAAACACCTAATCACAAAGAAAATGATTTTCTCAGTCAATGATAACTACAGAACTACTACTACCTATCGTGTAAAGA GGGACTAAAATCACTCATATACCAAACTAATGGGACTTAAATTAAGCGTAAAAAGCTAAATGGGCCTAAAGTATTCATAC ACTATACTAGAAAAATAAAAAAATGCAACTAAGTCTTATTTTGTTTTCAATTTCAAAAAAAAAAAAGTCTTAGTGTATGA TCATTTACCATATTTAAATAGCTCACTCGAATTGGATAATTTAAGAGCCACAAAAGATTGCATGAAGTGATAAGTTTAAA TCTTTACCACACAATGTTAAAGAGGAAGTAGAATTAATCATCTGAATTAAACATGTGCAAAGTGCCCTTTGGTGGACGTT TCTCCAAGAACCACCACACACAGAGCGTCTTGTCTTGTTTGTGTTAGGCGATTAGTTTAAGGTTGGTTGGTTGCTTTTAC CACTAAGTGCTACAAAATAACAAATTGTACATTCAGTGTGTGTTTAGTTTCACAACTTTTAGCTTTTAATTAGAAGCGTG ATTCTGCAGTAAGTTGAGCAGAGAAACAAACATTATCAAAGCATGTCATTTTTAGATCCCCAATCAAAATCTGAACGAAT TAAAAGAGCCCTGGTTGGTTCGGTTCAAATTTTACATTTTATACTTGGAACTCAAAGTGAATCGAACCAATAATAATCAG GTTGGTTAGGATCGGGTATGAATATTCCCAAATAAGAAAAAATTCTAGAATTCATATAATTTTGGTGGTAATTCGAACAG AAGATGCATAGGGTGGCACAATGGTGGCGTTGGCTAGAGGAGAATAGACCAAATCAAATGCATAATAAAACAAAACCTAA AATCACAAAGATTGGCTTGGCTAAGGGAAAGAGAAGAGAAGAGAAGAGAGTACCTACCTCTGCGATGGTGGAACTGACTC GAAGAACAAGAACAGAGGGCAAGCGGTGAGAGGACAAATGCTACGACGGTTGGAGGTGGTGCGGAAGGAGGCGACGACTG ATTAGATCTTTGAGGTGAGAGATGAGACAGCTTCGCATCGCAAGTGTGAGAGAAAATTATTTTCGAACCCATAACATTAA CCAAACCCCTAGTTTTGATTTCACCCGCGAGCCCAGCCCAGCCCAACCCGTTCTTTTGGCTGAGTCGGGTCTGGTCAACT AGATTGGTCGCGTCGACCCGACCAAGTAATAGTTCATGCTTTTCTTTTTTTAACATGATCAAATATCAAAGCACAAGAAC TAGTCCTCATACTCATAGTCCATTCAATTGTATTTAACTAACTCATCACACTATCAATTTTTGGTTCAACAACAACATAA ACCTCATATCCTTCTATTTTTTCTTTGGCCTATACTTTTGATATCAAATACTGCAGTAACTATCCTTCTATTTTTTCTTT GGCCTATACTTTTGATATCAAATACTGCAGTAACTACTAACTTCCTTCCTTGTCCTCAATTATGCCTCCCAATAAAATTA ACTTTGTGCATTCAAAGTCATATCTGAATAAGAGAAAGATAAAATCCTTGACTCAATTGACAATATTTCACCATGAAACA AGGATGAACATAGAAACCACTGAGATTTTTATGTTCTGGGAACTGTAAGAAACCCTGTTATGATATGATGAAATTTGGAC AAGCTTATCACACACATAAAGAAAGAAAAACACCCATATATGTCCTAGGAATTTACAAATAACAATCCCAAATCAAAAAC ACAAAATTGAAACAATCAAGGATACAAAACATGTTCATGAAAGACTAGTATTCATATTGGAAAATTTCAACAAATTAAGA AGCACCATCATCACCTTCACCTTCGTTTCTTTGACTTGGTATTGGCTTTACGCGTTCCAGCTCCGCCGCCACCAGCTGGC TTCTGTTTCCCACCAAAGAAACAACAAGCTGCTACCTTCGGAGAAGGTGGGTCCTCCAACGGCGGAGCAACGTTGACCGT CCGATATGGGCCAGCTGAAGCTGATCCTGATCTGCTCCTCTGCAGACCCTGTCTCTGTTCTCTGGCACCACCTCCTCCTT CATTCTCTTGTTGGTTTTGGCTCTGGTCGGTGATTCCAGAGAGGAACTTGTCATCCCACACCAACCCAGAAGACCCACTT CTTCTGAATGATGAGACTGATTTCTGCAGACCCTCAGCCATCTTCCCTCTTGTTTCTCTCTCTATCTTTCTATGTGATGA TGGTTGAATTTGAAGGGAAATTGTGAACAACAACTAACAACTATTGGAAAATGATGATGTTGATGACTTTTGATTATTGG AGAGATAATGAGGTGGGAGAAAATGACAAATAAGGATATATAAACAAGAAAAACCACTAGGGGAATCTAAATGCTAGGTT TGGCCTTATGTTAATCTGTTATACTAGTTGCTTATAGTTGTTGCCAATCTTAGCATTAATTAGACATTAACTTCTTTTGA CTTCAATGCTAGCTTTGACTCACTACTGGATGCATTTCTCATTTACTCCAATTCTTTTAACATTGTGAGACTCTGGG
CDS sequence (LotjaGi4g1v0269200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAACCAAGACAAGAGAGGGTTCATGTACATTTACAAAGTTGGCATTGGAAATGGAAACCAGAGAAACAAAGAGCT AGAGCATGCTGTGGAGAAGGAAAAGAAATCGAAGTCGCGAAGCTGGTTGCAAAGGATAAGAAATCCGACTCGAACATTGA ATAATGTTGAAAAGAGTGGCAACAGAAACTTGGAAGTTGGAGGATTTGTTGAGGCGAGGAAATCAACATCTTGCTTAGAG TTAGGATTAAGAGGAGGATTTGTGGAGGGAAGAAAGTCAGTGTCAAGCATGATAGAGGCATCATCATCACCAGCTGTAAA AGGGATCATAGTTGAGGTAGGAAGAAAATCAGTGTCAAGCATGATAGAGGCATCATCTTCACCAGCTGTAAAAGGGATCA TAGTTGAGGAAGGAAGAAAATCAGTGTCTCACATTGAAACAAAGTATGCTGCAGCAGAAAAAGCAAGAGGAGGATTTGAT GAGGGAAGAAAATCAGTGTCTCAAATTGAAACATTTTCCTCTGTGGCTGCATATCTTCAGGTGAAGGTTTTGGTCTCAGA CATGCCAAGCTTCATGCAAGTGCACGCCTTTCGTTGCGCTAGAAGGACACATGATAGCCAGGAAAAGTTTAGCAGCAAAC ACATAGCTCATAACATAAAGAAGGAGTTTGATAAAGCCTATGGTCCGGTTTGGCATTGCATTGTAGGCTCAGGTTTTGGT TCTTTTGTGACACATTCAAGGGGGTGTTTTCTTTATTTTTCAATGGAAAATCTATACATTCTACTGTTCAAGACCAAAGT TAAGAAGGCGGTGGATTGA
Protein sequence (LotjaGi4g1v0269200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANQDKRGFMYIYKVGIGNGNQRNKELEHAVEKEKKSKSRSWLQRIRNPTRTLNNVEKSGNRNLEVGGFVEARKSTSCLE LGLRGGFVEGRKSVSSMIEASSSPAVKGIIVEVGRKSVSSMIEASSSPAVKGIIVEEGRKSVSHIETKYAAAEKARGGFD EGRKSVSQIETFSSVAAYLQVKVLVSDMPSFMQVHAFRCARRTHDSQEKFSSKHIAHNIKKEFDKAYGPVWHCIVGSGFG SFVTHSRGCFLYFSMENLYILLFKTKVKKAVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 271 | 268 | 4.0E-73 | – | |
| PANTHER | 4 | 271 | 268 | 4.0E-73 | ||
| SMART | 176 | 265 | 90 | 1.5E-38 | ||
| Gene3D | 178 | 265 | 88 | 1.1E-30 | ||
| SUPERFAMILY | 179 | 265 | 87 | 1.7E-28 | ||
| Pfam | 181 | 265 | 85 | 1.4E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. | ||
| Cellular component | Dynein complex | Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity. |
Expression pattern of LotjaGi4g1v0269200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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