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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0271200 |
| Transcript ID | LotjaGi4g1v0271200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT4G13730.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13; TrEMBL-Plants: tr|K7M077|K7M077_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0271200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63724024..63727421) extracted from Lotus japonicus Gifu genome v1.2.
CAACTGAGTTTCATATCCGAGTCACTGATGGAGAACCAGAACCAGAACAAACCCTTACTATCTCTACAACTCGTTCGATT CCTCTCGGTAAACTCGGTCTCAACTCACCCGCCATGCTCAAAGGCAAGTTCAAGCTTCCACCACCTACTGACAAGGCTGG GAGAATCTTTCCCGATCAACTCGGCAGCTTAATCGCCGGATTTGATGAAAATGGAAACCGAATCGAAGCGTCCGACATCG AACTCGAGCCCGGTGAAGAGCTGGAGCCGATTCAACCCGGCGGGTTAGGGTTTTACAGAGAGTGTGACGACGGCGACGGA GCTGGCGGCGATGATGGTGGTGATGAAGACAAGGACAGGAAAATCAGGCAGAGAACGAGTAAAGACGCTGTCACTCCGGT TTCGGTGCTGAAATCGATTTCGGTGGACGAGAAAAGATCGGATTTAGAATATGAGGTTGGAGGTGTGGATTTATTGGAGA ATGAAAATGGGAATGAAATAGTGGATTGTTTGTTTATCTGGTTAAGATTTCCTTTGATTTGATCTCACTTTTTGGTTTTT ACTTTTGTTATCTATAGCTTTCTAGAAGGGAGATTAATTTGGAAAAGTTGCAAAGAATTGCTAGCACTGGTATTCCTGAT GGAGGCGGTTTGCGCGCAACGGCATGGAAGGTTAGTGTTAGAATATCTGGATTTTCATCATTTTGGTGCTCACATTGCAT ATTAGTTTCAGCTTTCAGGATCAGATACCTTCATGTTTTGAAATCTTACTATAGTGAGGAATGTAATAGTATCTTGTGTT TATGACTTTGATTCATTATCTAGTGATGAAGATTATTAGATTAGCAACAATGTGCATTTATGTTCCATTTGTTGAAGTGT AAAATGCCTTTGATTGTGGTTATGTCTGCACACAAGCAGCAGCTCATTGTCCTGTTATGATTTCCACAACCAGCTACTCC TGGGTTACTTACCTTCATCCCATGATCTGTGGGAGATTCAATTAAGAGAGAATAGGCAAAAATACGCTAATCTGAAAGAG GAGCTTCTCCTGAATCCGGTAATGTATTGCTGATTTTTGCACTTTTCATATGTGCAGCTATATCTGCTCTGACATATGTT GTAGCTCCTGCATTTTAGTTCAGTTTCACTGATCTTATTGTTGAACATCAAACAGTCTGAACATATATGGAAGGATTATG AACATTTAAGTTCGACTAAGCTGCATGAGGACAATGATGTTGATGGCCCCCTAAGGCGACATGAAATTTCTGAGGAAGAT CATCCTTTGAGCCTTGCTAAGGCAAGTCTTTGGAGTCAATATTTTAAGGTAAGTTTCTCCTCCATTTCAAAGTTACTTTT GACTCCTTTAGGATAATGGAATTGATACTTACCACTATCAGTTCTTCTTCTAGCATACAGAGATAGTAGAACAGATAGAT CGAGATTTGCAGCGTACACATCCAGATATGCCATTCTTTTCAGGGGAGACATCATTTAGTAAAAAGACTAGGGTAAATGA ACCCCCAAATTCCTATAAGTTTTCTATTAATTTTGTTGTGAGTTTTAGTTTTATCTGAACTATTCATCAACCTCTTTCTT GCCAATTTTGTTTTCAGTGTAATAATAAATTTTCAGGTTTTCATCTCTAATTTGTATTTTATTTATTTATTTTGACAATA GGAAGCGATGAGGGATATTCTTATCCTTTTTGCCAAGTTAAATCCTGCAATTCGATATGTTCAAGGCATGAACGAGGTCT TGGCACCAATATACTATGTATTTAGTACTGACACTGACAAACAAAATGCTGTAAGCACTTTCTTGGTTGAAACTGGTTAC TATGTGACTAGCGCCAGCTCTAATACTTGTTCTCTGGATAAGGTTGTTGATTAAAGGAAGGTTGATCCTGTGTTTTAAAT TTCAAGTTTGAGTGTAACATATCTTACCATATTGCTTATGTAGGAAGCCACTATGATTCCTCTCTTTACCCCTTCATGTG CAGAAGCCTGAAAGTTTTACTGGTAGTCAATTTGGAATTTTAACTTGTTTTACACATGAACCAACACCAACCAAGCATGA TTTGGTGTCCTTTATAATAATATTGACCGATATCCATTACGCTGAACAACCACAAAACGTATAACTTTGCAGATCAGCTA TTTGACTTGGCCATTTTAGATTACATGATTGATATATAACAATTGTCATCCTTTCCATTCATCATATTTTGTTCCTCAGG ATCGTTTGCATAAATATCAGCTGACGTAAATATAATGTTATCTATTTTTTGTCAATAAGTATCATCCTTTTATCATTTAG TTGTGTTTTTTTTTTCTCTTAGGCCAATGCAGAAGCGGATAGTTTTTCTTGTTTTGTTCGAATCTTAGGTGACTCTGTGG ATCATTTCTGTCAACAATTGGACAATAGTTCCAGTGGCATCCTTGGCACACTATCTCGTCTGTCAGATCTGCTAAAAGTA AATGACCAGCAATTATGGCATCATCTTGAATTTATAACAAAGGTAGATCCTTCAAAAGTTTTTTAAATTCAACAGCTTGT TCAATTTTCCTCTGTTTAAAATTGATGCATGTAGTCTCTTAACAGGTTAAACCACAATTCTATGCGTTCCGGTGGATTAC ACTGCTACTCACGCAAGAGTTCAAATTTGAGACTATCTTGAGAATATGGGATACAATTCTGAGTAATCCTTTTGGTGTTC AGGTCTCTCTCTCAACTGAACTCCTCGGCAATCTCTTGGAATAAAATTGACGCTCAATGTAAATATTCTTACTCTATATT TCATGTTGTTTGGCTGCTTCAATATTTTTTTTTGCAGGATATGCTTCTTCGGATCTGTTGTGCTATGCTACTTTGCGTGA AAAACAGACTGCTAAGCGGTGATTTTGTAGCTAATATAAAGCTTTTACAACACTATCCTGATGATATCAACATAGAATAC CTCCTTCAGGTAGCTCAGTACATTAGTCCTGACACTTCTTCTTATCGTTTATCCCTTTGATTTATTAGGCATGTACATTG TTAGTAAAATTAACTTCTGAAGACTAAATATTTTACACCTAGCACAAGACATGTCCACGGGACCACTGGAGATGTTAAGG ATAGAGTTTATGAGCATCATGTTGCTTCCATGCGACAATGATGGACCCATCTTCATTTTCCTCTGATAATTATTTTCTTC TATGAGTTGAAGTGCTTCATGTTTAAAGCAATGTGAAATTGCTCTTGTATGCTTTGTTTGGTTTAATAAAGAAATGAGCA GAAAAAAGATGAATAGAGAGAAAAGTGTAGATTTTGTAGGTTGTTTAATATGATGGAAATAGAATACAGTGACTTCTGTC TCTTTGTTTGGTTGAATATAAGTCTATTATGTTTTAAA
CDS sequence (LotjaGi4g1v0271200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAAAGGCAAGTTCAAGCTTCCACCACCTACTGACAAGGCTGGGAGAATCTTTCCCGATCAACTCGGCAGCTTAAT CGCCGGATTTGATGAAAATGGAAACCGAATCGAAGCGTCCGACATCGAACTCGAGCCCGGTGAAGAGCTGGAGCCGATTC AACCCGGCGGGTTAGGGTTTTACAGAGAGTGTGACGACGGCGACGGAGCTGGCGGCGATGATGGTGGTGATGAAGACAAG GACAGGAAAATCAGGCAGAGAACGAGTAAAGACGCTGTCACTCCGGTTTCGGTGCTGAAATCGATTTCGGTGGACGAGAA AAGATCGGATTTAGAATATGAGCTTTCTAGAAGGGAGATTAATTTGGAAAAGTTGCAAAGAATTGCTAGCACTGGTATTC CTGATGGAGGCGGTTTGCGCGCAACGGCATGGAAGCTACTCCTGGGTTACTTACCTTCATCCCATGATCTGTGGGAGATT CAATTAAGAGAGAATAGGCAAAAATACGCTAATCTGAAAGAGGAGCTTCTCCTGAATCCGTCTGAACATATATGGAAGGA TTATGAACATTTAAGTTCGACTAAGCTGCATGAGGACAATGATGTTGATGGCCCCCTAAGGCGACATGAAATTTCTGAGG AAGATCATCCTTTGAGCCTTGCTAAGGCAAGTCTTTGGAGTCAATATTTTAAGCATACAGAGATAGTAGAACAGATAGAT CGAGATTTGCAGCGTACACATCCAGATATGCCATTCTTTTCAGGGGAGACATCATTTAGTAAAAAGACTAGGGAAGCGAT GAGGGATATTCTTATCCTTTTTGCCAAGTTAAATCCTGCAATTCGATATGTTCAAGGCATGAACGAGGTCTTGGCACCAA TATACTATGTATTTAGTACTGACACTGACAAACAAAATGCTGCCAATGCAGAAGCGGATAGTTTTTCTTGTTTTGTTCGA ATCTTAGGTGACTCTGTGGATCATTTCTGTCAACAATTGGACAATAGTTCCAGTGGCATCCTTGGCACACTATCTCGTCT GTCAGATCTGCTAAAAGTAAATGACCAGCAATTATGGCATCATCTTGAATTTATAACAAAGGTTAAACCACAATTCTATG CGTTCCGGTGGATTACACTGCTACTCACGCAAGAGTTCAAATTTGAGACTATCTTGAGAATATGGGATACAATTCTGAGT AATCCTTTTGGTGTTCAGGATATGCTTCTTCGGATCTGTTGTGCTATGCTACTTTGCGTGAAAAACAGACTGCTAAGCGG TGATTTTGTAGCTAATATAAAGCTTTTACAACACTATCCTGATGATATCAACATAGAATACCTCCTTCAGGTAGCTCAGT ACATTAGTCCTGACACTTCTTCTTATCGTTTATCCCTTTGA
Protein sequence (LotjaGi4g1v0271200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKGKFKLPPPTDKAGRIFPDQLGSLIAGFDENGNRIEASDIELEPGEELEPIQPGGLGFYRECDDGDGAGGDDGGDEDK DRKIRQRTSKDAVTPVSVLKSISVDEKRSDLEYELSRREINLEKLQRIASTGIPDGGGLRATAWKLLLGYLPSSHDLWEI QLRENRQKYANLKEELLLNPSEHIWKDYEHLSSTKLHEDNDVDGPLRRHEISEEDHPLSLAKASLWSQYFKHTEIVEQID RDLQRTHPDMPFFSGETSFSKKTREAMRDILILFAKLNPAIRYVQGMNEVLAPIYYVFSTDTDKQNAANAEADSFSCFVR ILGDSVDHFCQQLDNSSSGILGTLSRLSDLLKVNDQQLWHHLEFITKVKPQFYAFRWITLLLTQEFKFETILRIWDTILS NPFGVQDMLLRICCAMLLCVKNRLLSGDFVANIKLLQHYPDDINIEYLLQVAQYISPDTSSYRLSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 464 | 464 | 1.0E-184 | – | |
| PANTHER | 1 | 464 | 464 | 1.0E-184 | – | |
| MobiDBLite | 40 | 89 | 50 | - | – | |
| MobiDBLite | 75 | 89 | 15 | - | – | |
| SUPERFAMILY | 114 | 361 | 248 | 4.18E-44 | ||
| SMART | 129 | 428 | 300 | 4.8E-44 | ||
| ProSiteProfiles | 134 | 402 | 269 | 31.011 | ||
| Pfam | 139 | 425 | 287 | 5.5E-36 | ||
| Coils | 155 | 175 | 21 | - | – | |
| Gene3D | 213 | 330 | 118 | 1.9E-12 | – | |
| Gene3D | 337 | 463 | 127 | 7.8E-34 | – | |
| SUPERFAMILY | 339 | 455 | 117 | 1.07E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0271200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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