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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0272700 |
| Transcript ID | LotjaGi4g1v0272700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT2G26600.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9ZQG9|E1314_ARATH Glucan endo-1,3-beta-glucosidase 14; TrEMBL-Plants: tr|V7CA30|V7CA30_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0272700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64039397..64043124) extracted from Lotus japonicus Gifu genome v1.2.
CAACCAAGAAACCCATTGACCAATAAAAACACACCATAGTAGCTTTGTACTGCATTGTTCGTTCTGCATCTGCTGCTGTT ACAATATCTCTATAAAAACGCCACAAATCTCTTTCAATTTTCCCCTTTTCCCTTTCCTCCCATTCTTCAATTTCCAAACC CAAACCCAAACCCTCCTTCTTCTTCTTCTTCTTCAATCCCGCGCCGCCAAGATTCTTCTACCACACTGTGTGAATGGAAG CGCTGAAGTAGCAGTTTCAGCGTTGCTGCAATTCAACACCATAGCGATTCTTCGTGTCTTATGGCAGCATGTCTGAAGAA GAAGCAGCATCAGTGTGTGCCACTTCAAAGAGTTTCAATTCCCTGTTTTGACCCTCTTTTCGACCACCCCACCAACACCA ACACCAACCCACTTTCACTGCTTCGTGATCATGCCGAATCACATCGCTTCTCTCTCCCGACCCATCATGACTTCTTTCTT CTTTCACCCTTTCCTTGTTATCTTCTTGCTCTTCTTCACTCTAACAGGTACTTTCTTTCTCTTCTTTATCTGTTGCCTCA AACCTCCAATTATCTTAATTTATAGATTTTTATTATTTTTTTATGATCATGAATTGATGTTTCTGCCCATGAATTTAGTT TAGTTTTGCCTTGTGTTGAAGAATTAAGACTTAAGACCATGTTCTTGTTTACCCTTGATTTTTTTTATTTTTTTTAGTTT ATTATCTTGGTTGCCTTTTCATTCAAATTAAAATTTTCTTTCTTTCTGTGGGGAGAGATTTTAATTTTTGTTTTTTAAGA TATATATGTTGCAATCCTCTTATGTTAACATTAGGATAACATTGATAAGTGTCATCACTTCCTGATTTCACCTGGGACCA CTGTTATTTTGATGTATGATGATTATTCCAATTCTATCAATTCATGGTTATGATTATTGATGGTTTTTCCTTTTGGGGTT TGTAAAGGTTGTCTTATGCACTTTCTATGTACATCTACTTAGTACCTATTTAGTTTGTTTAACTGGGATGATCAAATATA ATGATGGGCTTTGAGAAGTTTGTAGTTTGTGTTTTATGTCTGCTACATCATGTTAATGGAGTTTTACCTCACTCTTTGTT TTCCAGCGTCAGTGCAAGCGTTCACCGGGACTTACGGCATAAATTATGGGAGAATTGCAAATAACATCCCCTCTCCTGAT CAAGTTGTTACTCTTCTCAGAGCAGCAAAAATAAAGAATGTTAGAATCTATGATGCTGATCACAGTGTTCTCAAGGCCTT TAGCGGATCCGGGCTTGAACTTGTAATTGGAGTTACCAATGGACAGTTGCAAGACATGAGTTCGAATGCAGATCATGCTT TGGACTGGGTGAAGGACAATGTCCAGGCATTTCTTCCCGGGACAAGCATTCGTGGAATTGCCGTGGGCAATGAAGTCTTG GGTGGGGATGACCAATCTTCGTGGGGATTTCTTTTGGGCGCTGTGAAAAATATCTATAATGCTACGAAGAAACTTCATCT GGATGAGCTAGTTCAGATTTCTACTGCCAGCTCATTTGCTGTTTTTGCCGATTCCTACCCTCCTTCGTCTTGTGTATTTA GAGATACTGTTAAAAATCAGTATATGAAGCCGCTATTGGAGTTCTTCCAGCAAATTGGCTCTCCTTTCTGTTTGAACGCG TATCCTTCCCTAGCCTATGCAAGTGATCCAGAGCATATTGATTTAAATTATGCTCTTTTTAACCCAACAAAGGGAATTTA TGATCCAAAGTATAAGCTGCATTACGATAACATGCTTGAGGCTCAGATTGATGCAGCTTATACTGCTTTGGAGGATGCTG GATTTCACAAAATGGAAGTCATAGTTACAGAGACAGGGTGGGCTTCAGATGGAGACCAAAGTGAAGCTGGAGCTAACATA ACTAATGCAAGGACGTACAATTATAACCTACGTAAAAGGCTTGCGAAGAAGAAAGGAACCCCGCACAGGCCTAAAAATGT TATGAAGGCATACATATTTGCAATTTTTAATGAGAATCAGAAGCCTGGTCCTTTCTCCGAGAGGAACTATGGACTGTTCA AGGCTGATGGGAGTATATCATATAACATTGGGTTTCATGGGCTTAATGCTGGAGATTCATCTCTTTTGTCTCTTAAGGTA CCCTAAATTTCATTTGATGCTATATTGTTTGATTTTAAGCTCATTTAGAACTTTTCACTACCCAAACAAAGAGAAGGAAA GAGGGGTGGGATAGGAGTTTTATAAAACAGTTTCAATGAATCTGTTAGATGATGATGATGAAGTGCCATACAATTTACAC TAGCATAGACATAACATCTACTTTTACTACACTTTTAAGAGACTAACTTATTGGAAACTGACGTATCCTAGTTCCTAAGT GACAGGACCATATGATGGAAGTTTAGTGTTTCTCAAAAGTGCATTTAAGGAAGGCTGGGATGAAAATAATGATAACTGAA AAAACAAAGAAAATATTAAGAAAATTGACATGAGCTGGCCTTAACAAAAGTTGACTTACATATGAAGAAATGTTGCATTC CTGTAATGTAATGTATTTTGCTTTATTATGTCATCTTGGCTTTTATAATGTCAAAAGACCTATTGTAAAATTACTTTGTG GCATATGTTGCCATAAATTAATTGCTATGATTTCTTTCCTAATCAGTAATCACTCATTGCAACCATATAAGGTTTCCACC CATCTCTTGCCTATTAAAAAAGAAATATCAATATCACCCTTTTCAGAAACCTATAGGGAACTTTGAAGATTTTTTTCTTT ATGGAATAATTGGTCCTGTGCATTGACATGTTATATGTTTATATTCCAGATTTTTCCATCTATCTTGAATTACACATAAG GAAAAAAATGAAAGAATGATAAATTTCTTGATCCCTTTTTTCCATCTTTCTCGCTATAGACTAGCTGTAGAGCCAGAACC ATTGTTCATTGTTTGGAGGTTTATGAATATTCAAACTACTTTCCTTTCTCATAATTAGTTGATAGGTGGTTTGGTCATGG ATGGTTTAGTCATTCAAAGTTTCAAACCTGGCTACTTGGCCGAATTTAATTGCTGAAACAGAAGTTACCTTGTTTGTGAT TTATGTATTTTTGTACAACCTTGTGTTAATTGGTTCCTGTTTGATTTGTCTTTGCAGAATATCAATGCTCCAGGTTTGTC CCGGTCGTACACCATGGTACTGTCTCTATGTACTCTGATACTTCTGCTGAGTTTCTGGAGTTAGTGATATAGGTCCTTAC AATTGAAGGGGTTTTGGCCTTTCTTGCTCTCATTGTAGATCAAAATTATACCATTGATTATCATATTTAATAAAGCAATA TCTAGAAATTTTGATGTGTTTTTCCCATATTCAGTAAATCTCCTGATAAAGCATCTCCCTTCTTTACTTCGATAAAATCA GGAAATGTATTCTTAATTTACCATTCTGTTTGTGTAGATCAAAGCACTTAATATAGAAGTACTTAACATTGGACCAATAG AATAAAATAAAATAAAATACAATAAAATAAGGTGCTTGATGTGGTACTTTGAGTCGATTCAAGGCGTGGTACCCAAAATG AGTTAAATGAGTAGTAAAAACTTATATATCCGTTGAAAGTTTGATTTTATTATATTATAGTAATGTAGTATTCCATTGTT AGAGGCGTAAAATTTCTTTGTTGTGTTTTGTTAACTTTTGTTCTTCCG
CDS sequence (LotjaGi4g1v0272700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAATCACATCGCTTCTCTCTCCCGACCCATCATGACTTCTTTCTTCTTTCACCCTTTCCTTGTTATCTTCTTGCT CTTCTTCACTCTAACAGCGTCAGTGCAAGCGTTCACCGGGACTTACGGCATAAATTATGGGAGAATTGCAAATAACATCC CCTCTCCTGATCAAGTTGTTACTCTTCTCAGAGCAGCAAAAATAAAGAATGTTAGAATCTATGATGCTGATCACAGTGTT CTCAAGGCCTTTAGCGGATCCGGGCTTGAACTTGTAATTGGAGTTACCAATGGACAGTTGCAAGACATGAGTTCGAATGC AGATCATGCTTTGGACTGGGTGAAGGACAATGTCCAGGCATTTCTTCCCGGGACAAGCATTCGTGGAATTGCCGTGGGCA ATGAAGTCTTGGGTGGGGATGACCAATCTTCGTGGGGATTTCTTTTGGGCGCTGTGAAAAATATCTATAATGCTACGAAG AAACTTCATCTGGATGAGCTAGTTCAGATTTCTACTGCCAGCTCATTTGCTGTTTTTGCCGATTCCTACCCTCCTTCGTC TTGTGTATTTAGAGATACTGTTAAAAATCAGTATATGAAGCCGCTATTGGAGTTCTTCCAGCAAATTGGCTCTCCTTTCT GTTTGAACGCGTATCCTTCCCTAGCCTATGCAAGTGATCCAGAGCATATTGATTTAAATTATGCTCTTTTTAACCCAACA AAGGGAATTTATGATCCAAAGTATAAGCTGCATTACGATAACATGCTTGAGGCTCAGATTGATGCAGCTTATACTGCTTT GGAGGATGCTGGATTTCACAAAATGGAAGTCATAGTTACAGAGACAGGGTGGGCTTCAGATGGAGACCAAAGTGAAGCTG GAGCTAACATAACTAATGCAAGGACGTACAATTATAACCTACGTAAAAGGCTTGCGAAGAAGAAAGGAACCCCGCACAGG CCTAAAAATGTTATGAAGGCATACATATTTGCAATTTTTAATGAGAATCAGAAGCCTGGTCCTTTCTCCGAGAGGAACTA TGGACTGTTCAAGGCTGATGGGAGTATATCATATAACATTGGGTTTCATGGGCTTAATGCTGGAGATTCATCTCTTTTGT CTCTTAAGAATATCAATGCTCCAGGTTTGTCCCGGTCGTACACCATGGTACTGTCTCTATGTACTCTGATACTTCTGCTG AGTTTCTGGAGTTAG
Protein sequence (LotjaGi4g1v0272700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPNHIASLSRPIMTSFFFHPFLVIFLLFFTLTASVQAFTGTYGINYGRIANNIPSPDQVVTLLRAAKIKNVRIYDADHSV LKAFSGSGLELVIGVTNGQLQDMSSNADHALDWVKDNVQAFLPGTSIRGIAVGNEVLGGDDQSSWGFLLGAVKNIYNATK KLHLDELVQISTASSFAVFADSYPPSSCVFRDTVKNQYMKPLLEFFQQIGSPFCLNAYPSLAYASDPEHIDLNYALFNPT KGIYDPKYKLHYDNMLEAQIDAAYTALEDAGFHKMEVIVTETGWASDGDQSEAGANITNARTYNYNLRKRLAKKKGTPHR PKNVMKAYIFAIFNENQKPGPFSERNYGLFKADGSISYNIGFHGLNAGDSSLLSLKNINAPGLSRSYTMVLSLCTLILLL SFWS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 37 | 37 | - | – | |
| Phobius | 21 | 32 | 12 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| PANTHER | 24 | 395 | 372 | 1.8E-197 | – | |
| PANTHER | 24 | 395 | 372 | 1.8E-197 | – | |
| Phobius | 33 | 37 | 5 | - | – | |
| Phobius | 38 | 385 | 348 | - | – | |
| Gene3D | 41 | 369 | 329 | 2.0E-115 | – | |
| SUPERFAMILY | 42 | 361 | 320 | 5.52E-86 | ||
| Pfam | 43 | 362 | 320 | 9.1E-84 | ||
| Phobius | 386 | 403 | 18 | - | – | |
| Phobius | 404 | 404 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0272700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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